메뉴 건너뛰기




Volumn 11, Issue , 2010, Pages

VIPR: A probabilistic algorithm for analysis of microbial detection microarrays

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN INFERENCE; CLINICAL DIAGNOSTICS; DETECTION OF VIRUS; DETECTION SENSITIVITY; INFECTIOUS DISEASE; LEAVE-ONE-OUT CROSS VALIDATIONS; MICROARRAY HYBRIDIZATION; PROBABILISTIC ALGORITHM;

EID: 77954680497     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-384     Document Type: Article
Times cited : (4)

References (25)
  • 3
    • 10844247837 scopus 로고    scopus 로고
    • DNA microarrays for virus detection in cases of central nervous system infection
    • 10.1128/JCM.42.12.5811-5818.2004, 535236, 15583316
    • Boriskin YS, Rice PS, Stabler RA, Hinds J, Al-Ghusein H, Vass K, Butcher PD. DNA microarrays for virus detection in cases of central nervous system infection. J Clin Microbiol 2004, 42(12):5811-5818. 10.1128/JCM.42.12.5811-5818.2004, 535236, 15583316.
    • (2004) J Clin Microbiol , vol.42 , Issue.12 , pp. 5811-5818
    • Boriskin, Y.S.1    Rice, P.S.2    Stabler, R.A.3    Hinds, J.4    Al-Ghusein, H.5    Vass, K.6    Butcher, P.D.7
  • 4
    • 27744433479 scopus 로고    scopus 로고
    • DNA microarray technique for detection and identification of seven flaviviruses pathogenic for man
    • 10.1002/jmv.20489, 16254977
    • Nordstrom H, Falk KI, Lindegren G, Mouzavi-Jazi M, Walden A, Elgh F, Nilsson P, Lundkvist A. DNA microarray technique for detection and identification of seven flaviviruses pathogenic for man. J Med Virol 2005, 77(4):528-540. 10.1002/jmv.20489, 16254977.
    • (2005) J Med Virol , vol.77 , Issue.4 , pp. 528-540
    • Nordstrom, H.1    Falk, K.I.2    Lindegren, G.3    Mouzavi-Jazi, M.4    Walden, A.5    Elgh, F.6    Nilsson, P.7    Lundkvist, A.8
  • 5
    • 23744455067 scopus 로고    scopus 로고
    • DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses
    • 10.1128/JCM.43.8.3779-3787.2005, 1233982, 16081910
    • Korimbocus J, Scaramozzino N, Lacroix B, Crance JM, Garin D, Vernet G. DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses. J Clin Microbiol 2005, 43(8):3779-3787. 10.1128/JCM.43.8.3779-3787.2005, 1233982, 16081910.
    • (2005) J Clin Microbiol , vol.43 , Issue.8 , pp. 3779-3787
    • Korimbocus, J.1    Scaramozzino, N.2    Lacroix, B.3    Crance, J.M.4    Garin, D.5    Vernet, G.6
  • 6
    • 33750985091 scopus 로고    scopus 로고
    • Automated identification of multiple micro-organisms from resequencing DNA microarrays
    • 10.1093/nar/gkl565, 1636417, 17012284
    • Malanoski AP, Lin B, Wang Z, Schnur JM, Stenger DA. Automated identification of multiple micro-organisms from resequencing DNA microarrays. Nucleic Acids Res 2006, 34(18):5300-5311. 10.1093/nar/gkl565, 1636417, 17012284.
    • (2006) Nucleic Acids Res , vol.34 , Issue.18 , pp. 5300-5311
    • Malanoski, A.P.1    Lin, B.2    Wang, Z.3    Schnur, J.M.4    Stenger, D.A.5
  • 10
    • 58049186099 scopus 로고    scopus 로고
    • Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses
    • 10.1186/1471-2164-9-577, 2607299, 19046445
    • Wang Z, Malanoski AP, Lin B, Kidd C, Long NC, Blaney KM, Thach DC, Tibbetts C, Stenger DA. Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses. BMC Genomics 2008, 9:577. 10.1186/1471-2164-9-577, 2607299, 19046445.
    • (2008) BMC Genomics , vol.9 , pp. 577
    • Wang, Z.1    Malanoski, A.P.2    Lin, B.3    Kidd, C.4    Long, N.C.5    Blaney, K.M.6    Thach, D.C.7    Tibbetts, C.8    Stenger, D.A.9
  • 11
    • 53649109657 scopus 로고    scopus 로고
    • Detection of 11 common viral and bacterial pathogens causing community-acquired pneumonia or sepsis in asymptomatic patients by using a multiplex reverse transcription-PCR assay with manual (enzyme hybridization) or automated (electronic microarray) detection
    • 10.1128/JCM.00625-08, 2546717, 18650351
    • Kumar S, Wang L, Fan J, Kraft A, Bose ME, Tiwari S, Van Dyke M, Haigis R, Luo T, Ghosh M, Tang H, Haghnia M, Mather EL, Weisburg WG, Henrickson KJ. Detection of 11 common viral and bacterial pathogens causing community-acquired pneumonia or sepsis in asymptomatic patients by using a multiplex reverse transcription-PCR assay with manual (enzyme hybridization) or automated (electronic microarray) detection. J Clin Microbiol 2008, 46(9):3063-3072. 10.1128/JCM.00625-08, 2546717, 18650351.
    • (2008) J Clin Microbiol , vol.46 , Issue.9 , pp. 3063-3072
    • Kumar, S.1    Wang, L.2    Fan, J.3    Kraft, A.4    Bose, M.E.5    Tiwari, S.6    Van Dyke, M.7    Haigis, R.8    Luo, T.9    Ghosh, M.10    Tang, H.11    Haghnia, M.12    Mather, E.L.13    Weisburg, W.G.14    Henrickson, K.J.15
  • 15
    • 33645774343 scopus 로고    scopus 로고
    • E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns
    • 10.1186/gb-2005-6-9-r78, 1242213, 16168085
    • Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL. E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biol 2005, 6(9):R78. 10.1186/gb-2005-6-9-r78, 1242213, 16168085.
    • (2005) Genome Biol , vol.6 , Issue.9
    • Urisman, A.1    Fischer, K.F.2    Chiu, C.Y.3    Kistler, A.L.4    Beck, S.5    Wang, D.6    DeRisi, J.L.7
  • 16
    • 44049092165 scopus 로고    scopus 로고
    • DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data
    • 10.1186/gb-2007-8-9-r190, 2375028, 17868443
    • Watson M, Dukes J, Abu-Median AB, King DP, Britton P. DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data. Genome Biol 2007, 8(9):R190. 10.1186/gb-2007-8-9-r190, 2375028, 17868443.
    • (2007) Genome Biol , vol.8 , Issue.9
    • Watson, M.1    Dukes, J.2    Abu-Median, A.B.3    King, D.P.4    Britton, P.5
  • 17
    • 49549084188 scopus 로고    scopus 로고
    • PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays
    • 10.1093/bioinformatics/btn269, 18689845
    • Rehrauer H, Schonmann S, Eberl L, Schlapbach R. PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays. Bioinformatics 2008, 24(16):i83-89. 10.1093/bioinformatics/btn269, 18689845.
    • (2008) Bioinformatics , vol.24 , Issue.16
    • Rehrauer, H.1    Schonmann, S.2    Eberl, L.3    Schlapbach, R.4
  • 18
    • 10244226774 scopus 로고    scopus 로고
    • Comparison of probabilistic combination methods for protein secondary structure prediction
    • 10.1093/bioinformatics/bth370, 15217817
    • Liu Y, Carbonell J, Klein-Seetharaman J, Gopalakrishnan V. Comparison of probabilistic combination methods for protein secondary structure prediction. Bioinformatics 2004, 20(17):3099-3107. 10.1093/bioinformatics/bth370, 15217817.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3099-3107
    • Liu, Y.1    Carbonell, J.2    Klein-Seetharaman, J.3    Gopalakrishnan, V.4
  • 20
    • 33745405002 scopus 로고    scopus 로고
    • Viral hemorrhagic fevers
    • 10.1016/j.cll.2006.05.001, 16815457
    • Marty AM, Jahrling PB, Geisbert TW. Viral hemorrhagic fevers. Clin Lab Med 2006, 26(2):345-386. 10.1016/j.cll.2006.05.001, 16815457.
    • (2006) Clin Lab Med , vol.26 , Issue.2 , pp. 345-386
    • Marty, A.M.1    Jahrling, P.B.2    Geisbert, T.W.3
  • 21
    • 24944441321 scopus 로고    scopus 로고
    • Hemorrhagic fever viruses
    • 10.1016/j.ccc.2005.06.007, 16168314
    • Pigott DC. Hemorrhagic fever viruses. Crit Care Clin 2005, 21(4):765-783. 10.1016/j.ccc.2005.06.007, 16168314.
    • (2005) Crit Care Clin , vol.21 , Issue.4 , pp. 765-783
    • Pigott, D.C.1
  • 23
    • 1342303735 scopus 로고    scopus 로고
    • Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
    • 10.1186/gb-2003-4-2-r9, 151308, 12620119
    • Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, DeRisi JL. Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biol 2003, 4(2):R9. 10.1186/gb-2003-4-2-r9, 151308, 12620119.
    • (2003) Genome Biol , vol.4 , Issue.2
    • Bozdech, Z.1    Zhu, J.2    Joachimiak, M.P.3    Cohen, F.E.4    Pulliam, B.5    DeRisi, J.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.