-
1
-
-
0034604368
-
HMMSTR: A hidden Markov model for local sequence-structure correlations in proteins
-
Bystroff,C., Thorsson,V. and Baker,D. (2000) HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins. J. Mol. Biol., 301, 173-190.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 173-190
-
-
Bystroff, C.1
Thorsson, V.2
Baker, D.3
-
2
-
-
3543145933
-
Protein secondary structure: Entropy, correlations and prediction
-
Crooks,G.E. and Brenner,S.E. (2004) Protein secondary structure: entropy, correlations and prediction. Bioinformatics, 20, 1603-1611.
-
(2004)
Bioinformatics
, vol.20
, pp. 1603-1611
-
-
Crooks, G.E.1
Brenner, S.E.2
-
3
-
-
0033106244
-
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
-
Cuff,J.A. and Barton,G.J. (1999) Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. Proteins, 34, 508-519.
-
(1999)
Proteins
, vol.34
, pp. 508-519
-
-
Cuff, J.A.1
Barton, G.J.2
-
4
-
-
0034663597
-
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff,J.A. and Barton,G.J. (2000) Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins, 40, 502-511.
-
(2000)
Proteins
, vol.40
, pp. 502-511
-
-
Cuff, J.A.1
Barton, G.J.2
-
5
-
-
0033026514
-
Improved performance in protein secondary structure prediction by inhomogeneous score combination
-
Guermeur,Y., Geourjon,C., Gallinari,P. and Deleage,D. (1999) Improved performance in protein secondary structure prediction by inhomogeneous score combination. Bioinformatics, 15, 413-421.
-
(1999)
Bioinformatics
, vol.15
, pp. 413-421
-
-
Guermeur, Y.1
Geourjon, C.2
Gallinari, P.3
Deleage, D.4
-
6
-
-
1542346418
-
A novel method for protein secondary structure prediction using dual-layer SVM and profiles
-
Guo,J., Chen,H., Sun,Z. and Lin,Y. (2004) A novel method for protein secondary structure prediction using dual-layer SVM and profiles. Proteins, 4, 738-743.
-
(2004)
Proteins
, vol.4
, pp. 738-743
-
-
Guo, J.1
Chen, H.2
Sun, Z.3
Lin, Y.4
-
7
-
-
0003678451
-
Markov fields on finite graphs and lattices
-
Unpublished manuscript
-
Hammersley,J. and Clifford,P. (1971) Markov fields on finite graphs and lattices. Unpublished manuscript.
-
(1971)
-
-
Hammersley, J.1
Clifford, P.2
-
8
-
-
0035957531
-
A novel method of protein secondary structure prediction with high segment overlap measure: Support vector machine approach
-
Hua,S. and Sun,Z. (2001) A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach. J. Mol. Biol., 308, 397-407.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 397-407
-
-
Hua, S.1
Sun, Z.2
-
9
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones,D.T. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292 195-202.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
10
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
11
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
12
-
-
0141593924
-
Protein secondary structure prediction based on an improved support vector machines approach
-
Kim,H. and Park,H. (2003) Protein secondary structure prediction based on an improved support vector machines approach. Protein Eng., 16, 553-560.
-
(2003)
Protein Eng.
, vol.16
, pp. 553-560
-
-
Kim, H.1
Park, H.2
-
13
-
-
0029804192
-
Identification and application of the concepts important for accurate and reliable protein secondary structure prediction
-
King,R.D. and Sternberg,M.J. (1996) Identification and application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Sci., 5, 2298-2310.
-
(1996)
Protein Sci.
, vol.5
, pp. 2298-2310
-
-
King, R.D.1
Sternberg, M.J.2
-
14
-
-
0039240492
-
Statistical mechanics of ensemble learning
-
Krogh,A. and Sollich,P. (1997) Statistical mechanics of ensemble learning. Phys. Rev. E., 55, 811-825.
-
(1997)
Phys. Rev. E.
, vol.55
, pp. 811-825
-
-
Krogh, A.1
Sollich, P.2
-
15
-
-
0142192295
-
Conditional random fields: Probabilistic models for segmenting and labeling sequence data
-
Williamstown, MA, USA
-
Lafferty,J., McCallum,A. and Pereira,F. (2001) Conditional random fields: probabilistic models for segmenting and labeling sequence data. Proceedings of the 18th International Conference on Machine Learning (ICML'01), 282-289, Williamstown, MA, USA.
-
(2001)
Proceedings of the 18th International Conference on Machine Learning (ICML'01)
, pp. 282-289
-
-
Lafferty, J.1
McCallum, A.2
Pereira, F.3
-
16
-
-
0000747663
-
Maximum entropy Markov models for information extraction and segmentation
-
Stanford, CA, USA
-
McCallum,A., Freitag,D. and Pereira,F. (2000) Maximum entropy Markov models for information extraction and segmentation. Proceedings of the 17th International Conference on Machine Learning (ICML'00), 591-598, Stanford, CA, USA.
-
(2000)
Proceedings of the 17th International Conference on Machine Learning (ICML'00)
, pp. 591-598
-
-
McCallum, A.1
Freitag, D.2
Pereira, F.3
-
18
-
-
0033933636
-
Cascaded multiple classifiers for secondary structure prediction
-
Ouali,M. and King,R.D. (2000) Cascaded multiple classifiers for secondary structure prediction. Protein Sci., 9, 1162-1176.
-
(2000)
Protein Sci.
, vol.9
, pp. 1162-1176
-
-
Ouali, M.1
King, R.D.2
-
19
-
-
0036568279
-
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
-
Pollastri,G., Przybylski,D., Rost,B. and Baldi,P. (2002) Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins 47, 228-235.
-
(2002)
Proteins
, vol.47
, pp. 228-235
-
-
Pollastri, G.1
Przybylski, D.2
Rost, B.3
Baldi, P.4
-
21
-
-
0024610919
-
A tutorial on hidden markov models and selected applications in speech recognition
-
Rabiner,L.R. (1989) A tutorial on hidden markov models and selected applications in speech recognition. Proceedings of the IEEE 77, 257-286.
-
(1989)
Proceedings of the IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
-
22
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost,B. and Sander,C. (1993) Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol., 232, 584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
23
-
-
0028064006
-
Redefining the goals of protein secondary structure prediction
-
Rost,B., Sander,C. and Schneider,R. (1994) Redefining the goals of protein secondary structure prediction. J. Mol. Biol., 235, 13-26.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 13-26
-
-
Rost, B.1
Sander, C.2
Schneider, R.3
-
24
-
-
0035782925
-
Review: Protein secondary structure prediction continues to rise
-
Rost,B. (2001) Review: protein secondary structure prediction continues to rise. J. Struct. Biol., 134, 204-218.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 204-218
-
-
Rost, B.1
-
25
-
-
0028965118
-
Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments
-
Salamov,A.A. and Solovyev,V.V. (1995) Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments. J. Mol. Biol., 247, 11-15.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 11-15
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
26
-
-
0033492988
-
Decision tree-based formation of consensus protein secondary structure prediction
-
Selbig,J., Mevissen,T. and Lengauer,T. (1999) Decision tree-based formation of consensus protein secondary structure prediction. Bioinformatics, 15, 1039-1046.
-
(1999)
Bioinformatics
, vol.15
, pp. 1039-1046
-
-
Selbig, J.1
Mevissen, T.2
Lengauer, T.3
-
27
-
-
85127438349
-
Learning with ensembles: How over-fitting can be useful
-
Denver, CO, USA
-
Sollich,P. and Krogh,A. (1996) Learning with ensembles: how over-fitting can be useful. Proceedings of Advances in Neural Information Processing Systems, (NIPS'96), 190-196, Denver, CO, USA.
-
(1996)
Proceedings of Advances in Neural Information Processing Systems, (NIPS'96)
, pp. 190-196
-
-
Sollich, P.1
Krogh, A.2
-
29
-
-
0026692226
-
Stacked generalization
-
Wolpert,D.H. (1992) Stacked generalization. Neural Networks, 5, 241-259.
-
(1992)
Neural Networks
, vol.5
, pp. 241-259
-
-
Wolpert, D.H.1
-
30
-
-
0033081846
-
A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment
-
Zemla,A., Venclovas,C., Fidelis,K. and Rost,B. (1999) A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins, 34, 220-223.
-
(1999)
Proteins
, vol.34
, pp. 220-223
-
-
Zemla, A.1
Venclovas, C.2
Fidelis, K.3
Rost, B.4
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