Analytical ultracentrifugation sedimentation velocity for the characterization of detergent-solubilized membrane proteins Ca ++-ATPase and ExbB

Journal of Biological Physics

Volumn 33, Issue 5-6 SPECL.ISSUE, 2007, Pages 399-419

  Salvay, Andrés G ^a,b,c,d,e   Santamaria, Monica ^f,j   Le Maire, Marc ^g,h,i   Ebel, Christine ^a,b,c  

^a INSTITUT DE BIOLOGIE STRUCTURALE   (France)

^b CEA GRENOBLE   (France)

^c UNIV GRENOBLE ALPES   (France)

^d Instituto de Fisica de Liquidos y Sistemas Biologicos   (Argentina)

^e UNIVERSIDAD NACIONAL DE QUILMES   (Argentina)

^f INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

^g SERVICE DE CHIMIE BIOORGANIQUE ET DE MARQUAGE   (France)

^h CNRS   (France)

ⁱ UNIVERSITÉ PARIS SACLAY   (France)

^j UNIVERSITY OF NAVARRA   (Spain)

more..

Author keywords

Analytical ultracentrifugation; Ca ++ ATPase; ExbB; Membrane proteins

Indexed keywords

EID: 77954615206     PISSN: 00920606     EISSN: 15730689     Source Type: Journal    
DOI: 10.1007/s10867-008-9058-3     Document Type: Article

References (31)

1. Gohon, Y., Pavlov, G., Timmins, P., Tribet, C., Popot, J.-L., Ebel, C.: Partial specific volume and solvent interactions of amphipol A8-35. Anal. Biochem. 334(2), 318-334 (2004)
2. Lebaupain, F., Salvay, A.G., Olivier, B., Durand, G., Fabiano, A.-S., Michel, N., Popot, J.-L., Ebel, C., Breyton, C., Pucci, B.: Lactobionamide surfactants with hydrogenated, perfluorinated or hemifluorinated tails: physical-chemical and biochemical characterization. Langmuir 22(21), 8881-8890 (2006)
3. Musatov, A., Robinson, N.C.: Cholate-induced dimerization of detergent-or phospholipid-solubilized bovine cytochrome C oxidase. Biochemistry 41(13), 4371-4376 (2002)
4. Josse, D., Ebel, C., Stroebel, D., Fontaine, A., Borges, F., Echalier, A., Baud, D., Renault, F., le Maire, M., Chabrieres, E. Masson, P.: Oligomeric states of the detergent-solubilized human serum paraoxonase (PON1). J. Biol. Chem. 277, 33386-33397 (2002)
5. Fleming, K.G.: Standardizing the free energy change of transmembrane helix-helix interactions. J. Mol. Biol. 323, 563-571 (2002)
6. Fisher, L.E., Engelman, D.M., Sturgis, J.N.: Effect of detergents on the association of the glycophorin A transmembrane helix. Biophys. J. 85, 3097-3105 (2003)
7. le Maire, M., Champeil, P., Møller, J.V.: Interaction of membrane proteins and lipids with solubilizing detergents. Biochim. Biophys. Acta Reviews on Biomembranes 1508, 86-111 (2000)
8. Breyton, C., Tribet, C., Olive, J., Dubacq, J.-P., Popot, J.-L.: Dimer to monomer conversion of the cytochrome b6 f complex. Causes and consequences. J. Biol. Chem. 272, 21892-21900 (1997)
9. Ebel, C.: Analytical Ultracentrifugation for the study of biological macromolecules. Progr. Colloid Polym. Sci. 127, 73-82 (2004)
10. Ebel, C.: Analytical ultracentrifugation: State of the art and perspectives. In: Uversky, V., Permyakov, E.A. (eds.) Protein Structures: Methods in Protein Structure and Stability Analysis. Nova Science Publishers, New York (2007)
11. Ebel, C., Møller, J.V., le Maire, M.: Analytical ultracentrifugation: membrane protein assemblies in the presence of detergent. In: Pebay-Peyroula, E. (ed.) Biophysical approaches of structure and functions of membrane proteins. Wiley (2007)
12. Schuck, P.: Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modelling. Biophys. J. 78, 1606-1619 (2000)
13. Dam, J., Schuck, P.: Calculating sedimentation coefficient distributions by direct modeling of sedimentation velocity concentration profiles. Methods Enzymol. 384, 185-212 (2004)
14. Balbo, A., Minor, K.H., Velikovsky, C.A., Mariuzza, R.A., Peterson, C.B., Schuck, P.: Studying multiprotein complexes by multi-signal sedimentation velocity analytical ultracentrifugation. PNAS 102, 81-86 (2005)
15. 2+-ATPase from sarcoplasmic reticulum. J. Biol. Chem. 264, 4907-4915 (1989)
16. Møller, J.V., le Maire, M.: Detergent binding as a measure of hydrophobic surface area of integral membrane proteins. J. Biol. Chem. 268(25), 18659-18672 (1993)
17. Møller, J.V., Juul, B., le Maire, M.: Structural organization, ion transport, and energy transduction of P-type ATPases. Biochim. Biophys. Acta 1286, 1-51 (1996)
18. 2+-ATPase of the sarcoplasmic reticulum. Annu. Rev. Biochem. 73, 269-92 (2004)
19. 2+-ATPase pump. Curr. Opin. Struct. Biol. 15, 387-393 (2005)
20. Postle, K., Kadner, R.J.: Touch and go: tying TonB to transport. Mol. Microbiol. 49(4), 869-882 (2003)
21. Higgs, P.I., Larsen, R.A., Postle, K.: Quantification of known components of the Escherichia coli TonB energy transduction system: TonB, ExbB, ExbD and FepA. Mol. Microbiol. 44(1), 271-281 (2002)
22. Held, K.G., Postle, K.: ExbB and ExbD do not function independently in TonB-dependent energy transduction. J. Bacteriol. 184, 5170-5173 (2002)
23. Salvay, A.G., Ebel, C.: Analytical ultracentrifuge for the characterization of detergent in solution. Progr. Colloid Polym. Sci. 131, 74-82 (2006)
24. Hayashi, Y., Matsui, H., Takagi, T.: Membrane protein molecular weight determined by low-angle laser light-scattering photometry coupled with high-performance gel chromatography. Methods Enzymol. 172, 514-525 (1989)
25. Yernool, D., Boudker, O., Folta-Stogniew, E., Gouaux, E.: Trimeric subunit stoichiometry of the Glutamate Transporters from Bacillus caldotenax and bacillus stearothermophilus. Biochemistry 42, 12981-12988 (2003)
26. Masson, P., Balny, C.: Linear and non-linear pressure dependence of enzyme catalytic parameters. Biochim. Biophys. Acta 1724, 440-450 (2005)
27. Osugi, J., Sato, M., Ifuki, N.: Micelle formation of cationic detergent solution at high pressures. The Review of Physical Chemistry of Japan 35(1), 32-37 (1965)
28. 2+-ATPase. J. Biol. Chem. 275(25), 18623-18637 (2000)
29. le Maire, M., Møller, J.V., Menguy, T., Velours, J., Champeil, P.: Protein-protein contacts in solubilized membrane proteins, as detected by cross-linking. Anal. Biochem. 362, 168-171 (2007)
30. 2+-ATPase, reconstituted with an excess of phospholipid. J. Biol. Chem. 265, 12020-12028 (1990)
31. Chabre, M., le Maire, M.: Monomeric G-protein-coupled-receptor as a functional unit. Biochemistry 44, 9395-9403 (2005)