-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
25444503550
-
EstimateS: Statistical estimation of species richness and shared species from samples. Version 8
-
[WWW document]. Persistent URL
-
Colwell RK. EstimateS: Statistical estimation of species richness and shared species from samples. Version 8. 2006, http://purl.oclc.org/estimates, [WWW document]. Persistent URL
-
(2006)
-
-
Colwell, R.K.1
-
3
-
-
34247859231
-
Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream)
-
Countway PD, Gast R, Dennett MR, Savai P, Rose JM, Caron DA. Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream). Environ Microbiol 2007, 9:1219-1232.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1219-1232
-
-
Countway, P.D.1
Gast, R.2
Dennett, M.R.3
Savai, P.4
Rose, J.M.5
Caron, D.A.6
-
4
-
-
34547617665
-
Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment (2007)
-
Crump BC, Adams HE, Hobbie JE, Kling GW. Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment (2007). Ecology 2007, 88:1365-1378.
-
(2007)
Ecology
, vol.88
, pp. 1365-1378
-
-
Crump, B.C.1
Adams, H.E.2
Hobbie, J.E.3
Kling, G.W.4
-
5
-
-
43449106779
-
Widespread distribution of a unique marine protistan lineage
-
Cuvelier ML, Ortiz A, Kim E, Moehlig H, Richardson DE, Heidelberg JF, Archibald JM. Widespread distribution of a unique marine protistan lineage. Environl Microbiol 2008, 10:1621-1634.
-
(2008)
Environl Microbiol
, vol.10
, pp. 1621-1634
-
-
Cuvelier, M.L.1
Ortiz, A.2
Kim, E.3
Moehlig, H.4
Richardson, D.E.5
Heidelberg, J.F.6
Archibald, J.M.7
-
6
-
-
0035407646
-
Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by Small-Subunit rRNA gene cloning and sequencing
-
Diez B, Pedros-Alio C, Massana R. Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by Small-Subunit rRNA gene cloning and sequencing. Appl Environ Microbiol 2001, 67:2932-2941.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2932-2941
-
-
Diez, B.1
Pedros-Alio, C.2
Massana, R.3
-
7
-
-
40849125797
-
Culture-independent assessment of planktonic ciliate diversity in coastal northwest Atlantic waters
-
Doherty M, Costas BA, McManus GB, Katz LA. Culture-independent assessment of planktonic ciliate diversity in coastal northwest Atlantic waters. Aquat Microb Ecol 2007, 48:141-154.
-
(2007)
Aquat Microb Ecol
, vol.48
, pp. 141-154
-
-
Doherty, M.1
Costas, B.A.2
McManus, G.B.3
Katz, L.A.4
-
8
-
-
34250194685
-
The 'neutral' community structure of planktonic herbivores, tintinnid ciliates of the microzooplankton, across the SE Tropical Pacific Ocean
-
Dolan JR, Ritchie ME, Ras J. The 'neutral' community structure of planktonic herbivores, tintinnid ciliates of the microzooplankton, across the SE Tropical Pacific Ocean. Biogeosciences 2007, 4:297-310.
-
(2007)
Biogeosciences
, vol.4
, pp. 297-310
-
-
Dolan, J.R.1
Ritchie, M.E.2
Ras, J.3
-
9
-
-
64649105828
-
Dynamics of core and occasional species in the marine plankton: tintinnid ciliates in the north-west Mediterranean Sea
-
Dolan JR, Ritchie ME, Tunin-Ley A, Pizay M. Dynamics of core and occasional species in the marine plankton: tintinnid ciliates in the north-west Mediterranean Sea. J Biogeogr 2009, 36:887-895.
-
(2009)
J Biogeogr
, vol.36
, pp. 887-895
-
-
Dolan, J.R.1
Ritchie, M.E.2
Tunin-Ley, A.3
Pizay, M.4
-
10
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV, Naeem S. Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci USA 2006, 103:13104-13109.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13104-13109
-
-
Fuhrman, J.A.1
Hewson, I.2
Schwalbach, M.S.3
Steele, J.A.4
Brown, M.V.5
Naeem, S.6
-
11
-
-
45549109457
-
A latitudinal diversity gradient in planktonic marine bacteria
-
Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, Brown MV, Green JL, Brown JH. A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci USA 2008, 105:7774-7778.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7774-7778
-
-
Fuhrman, J.A.1
Steele, J.A.2
Hewson, I.3
Schwalbach, M.S.4
Brown, M.V.5
Green, J.L.6
Brown, J.H.7
-
13
-
-
16844386815
-
Neutral theory in community ecology and the hypothesis of functional equivalence
-
Hubbell SP. Neutral theory in community ecology and the hypothesis of functional equivalence. Funct Ecol 2005, 19:166-172.
-
(2005)
Funct Ecol
, vol.19
, pp. 166-172
-
-
Hubbell, S.P.1
-
14
-
-
33745080242
-
Neutral theory and the evolution of ecological equivalence
-
Hubbell SP. Neutral theory and the evolution of ecological equivalence. Ecology 2006, 87:1387-1398.
-
(2006)
Ecology
, vol.87
, pp. 1387-1398
-
-
Hubbell, S.P.1
-
15
-
-
0002694128
-
A conspectus of the marine and freshwater Ciliata belonging to the suborder Tintinnoinea, with descriptions of new species principally from the Agassiz Expedition to the eastern tropical Pacific 1904-1905
-
Kofoid CA, Campbell AS. A conspectus of the marine and freshwater Ciliata belonging to the suborder Tintinnoinea, with descriptions of new species principally from the Agassiz Expedition to the eastern tropical Pacific 1904-1905. Univ Calif Publ Zool 1929, 34:1-403.
-
(1929)
Univ Calif Publ Zool
, vol.34
, pp. 1-403
-
-
Kofoid, C.A.1
Campbell, A.S.2
-
16
-
-
0002842224
-
Reports on the scientific results of the expedition to the eastern tropical Pacific
-
in charge of Alexander Agassiz, by the U.S. Fish Commission Steamer 'Albatross,' from October, 1904, to March, 1905, Lieut.-Commander L.N. Garrett, U.S.N., Commanding. XXXVII. The Ciliata: The Tintinnoinea
-
Kofoid CA, Campbell AS. Reports on the scientific results of the expedition to the eastern tropical Pacific. Bull Mus Comp Zool Harv 1939, 84:1-473. in charge of Alexander Agassiz, by the U.S. Fish Commission Steamer 'Albatross,' from October, 1904, to March, 1905, Lieut.-Commander L.N. Garrett, U.S.N., Commanding. XXXVII. The Ciliata: The Tintinnoinea
-
(1939)
Bull Mus Comp Zool Harv
, vol.84
, pp. 1-473
-
-
Kofoid, C.A.1
Campbell, A.S.2
-
17
-
-
0035252640
-
Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton
-
Lopez-Garcia P, Rodriguez-Valera F, Pedros-Alio C, Moreira D. Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature 2001, 409:603-607.
-
(2001)
Nature
, vol.409
, pp. 603-607
-
-
Lopez-Garcia, P.1
Rodriguez-Valera, F.2
Pedros-Alio, C.3
Moreira, D.4
-
18
-
-
34547433545
-
Global patterns in bacterial diversity
-
Lozupone CA, Knight R. Global patterns in bacterial diversity. Proc Natl Acad Sci USA 2007, 104:11436-11440.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 11436-11440
-
-
Lozupone, C.A.1
Knight, R.2
-
19
-
-
33748713890
-
UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M, Knight R. UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006, 7:371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
20
-
-
33947269742
-
Quantitative and qualitative ß diversity measures lead to different insights into factors that structure microbial communities
-
Lozupone CA, Hamady M, Kelley ST, Knight R. Quantitative and qualitative ß diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 2007, 73:1576-1585.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.A.1
Hamady, M.2
Kelley, S.T.3
Knight, R.4
-
21
-
-
34548536276
-
Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework
-
McGill BJ, Rampal S, Etienne JS, Gray DA, Anderson MJ, Benecha HK, Dornelas M. Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework. Ecol Lett 2007, 10:995-1015.
-
(2007)
Ecol Lett
, vol.10
, pp. 995-1015
-
-
McGill, B.J.1
Rampal, S.2
Etienne, J.S.3
Gray, D.A.4
Anderson, M.J.5
Benecha, H.K.6
Dornelas, M.7
-
22
-
-
0030302927
-
CHEMTAX - a program for estimating class abundances from chemical markers: Application to HPLC measurements of phytoplankton
-
Mackey MD, Mackey DJ, Higgins HW, Wright SW. CHEMTAX - a program for estimating class abundances from chemical markers: Application to HPLC measurements of phytoplankton. Mar Ecol Prog Ser 1996, 144:265-283.
-
(1996)
Mar Ecol Prog Ser
, vol.144
, pp. 265-283
-
-
Mackey, M.D.1
Mackey, D.J.2
Higgins, H.W.3
Wright, S.W.4
-
24
-
-
0037452044
-
Explaining the excess of rare species in natural species abundance distributions
-
Magurran AE, Henderson PA. Explaining the excess of rare species in natural species abundance distributions. Nature 2003, 422:714-716.
-
(2003)
Nature
, vol.422
, pp. 714-716
-
-
Magurran, A.E.1
Henderson, P.A.2
-
25
-
-
13444251528
-
RDP2: recombination detection and analysis from sequence alignments
-
Martin DP, Williamson C, Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 2005, 21:260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
26
-
-
45849119808
-
Unveiling new microbes in the surface ocean
-
Massana R, Pedros-Alio C. Unveiling new microbes in the surface ocean. Cur Opin Microbiol 2008, 11:213-218.
-
(2008)
Cur Opin Microbiol
, vol.11
, pp. 213-218
-
-
Massana, R.1
Pedros-Alio, C.2
-
27
-
-
0026708873
-
Analysing the mosaic structure of genes
-
Maynard Smith J. Analysing the mosaic structure of genes. J Mol Evol 1992, 34:126-129.
-
(1992)
J Mol Evol
, vol.34
, pp. 126-129
-
-
Maynard Smith, J.1
-
28
-
-
0035252376
-
Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
-
Moon-van der Staay S, De Wachter R, Vaulot D. Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 2001, 409:607-610.
-
(2001)
Nature
, vol.409
, pp. 607-610
-
-
Moon-van der Staay, S.1
De Wachter, R.2
Vaulot, D.3
-
29
-
-
34247884488
-
Vertical distribution of picoeukaryotic diversity in the Sargasso Sea
-
Not F, Gausling R, Azam F, Heidelberg JF, Worden AZ. Vertical distribution of picoeukaryotic diversity in the Sargasso Sea. Environ Microbiol 2007, 9:1233-1252.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1233-1252
-
-
Not, F.1
Gausling, R.2
Azam, F.3
Heidelberg, J.F.4
Worden, A.Z.5
-
30
-
-
22944456598
-
-
Uppsala, Sweden, Evolutionary Biology Centre, Uppsala University, Program distributed by the author
-
Nylander JAA. MrModeltest V2 2004, Uppsala, Sweden, Evolutionary Biology Centre, Uppsala University, Program distributed by the author
-
(2004)
MrModeltest V2
-
-
Nylander, J.A.A.1
-
31
-
-
0033590220
-
Possible emergence of new geminiviruses by frequent recombination
-
Padidam M, Sawyer S, Fauquet CM. Possible emergence of new geminiviruses by frequent recombination. Virology 1999, 265:218-225.
-
(1999)
Virology
, vol.265
, pp. 218-225
-
-
Padidam, M.1
Sawyer, S.2
Fauquet, C.M.3
-
32
-
-
33744745905
-
Marine microbial diversity: can it be determined?
-
Pedros-Alio C. Marine microbial diversity: can it be determined? Trends Microbiol 2006, 14:257-263.
-
(2006)
Trends Microbiol
, vol.14
, pp. 257-263
-
-
Pedros-Alio, C.1
-
33
-
-
0036097812
-
Evaluation of methods for detecting recombination from DNA sequences: empirical data
-
Posada D. Evaluation of methods for detecting recombination from DNA sequences: empirical data. Mol Biol Evol 2002, 19:708-717.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 708-717
-
-
Posada, D.1
-
34
-
-
0035139147
-
Intraspecific gene genealogies: trees grafting intonetworks
-
Posada D, Crandall KA. Intraspecific gene genealogies: trees grafting intonetworks. Trends Ecol Evol 2001, 16:37-45.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 37-45
-
-
Posada, D.1
Crandall, K.A.2
-
35
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
36
-
-
58549085767
-
Microzooplankton (tintinnid ciliates) diversity: coastal community structure and driving mechanisms in the southern Tyrrhenian Sea (Western Mediterranean)
-
Sitran R, Bergamasco A, Decembrini F, Guglielmo L. Microzooplankton (tintinnid ciliates) diversity: coastal community structure and driving mechanisms in the southern Tyrrhenian Sea (Western Mediterranean). J Plankton Res 2009, 31:153-170.
-
(2009)
J Plankton Res
, vol.31
, pp. 153-170
-
-
Sitran, R.1
Bergamasco, A.2
Decembrini, F.3
Guglielmo, L.4
-
37
-
-
34248157603
-
Modeling taxa-abundance distributions in microbial communities using environmental sequence data
-
Sloan WT, Woodcock S, Lunn M, Head IM, Curtis TP. Modeling taxa-abundance distributions in microbial communities using environmental sequence data. Microb Ecol 2007, 53:443-455.
-
(2007)
Microb Ecol
, vol.53
, pp. 443-455
-
-
Sloan, W.T.1
Woodcock, S.2
Lunn, M.3
Head, I.M.4
Curtis, T.P.5
-
38
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored 'rare biosphere'
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM. Microbial diversity in the deep sea and the underexplored 'rare biosphere'. Proc Natl Acad Sci USA 2006, 103:12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
-
39
-
-
0028162177
-
Improved separations of phytoplankton pigments using temperature-controlled high performance liquid chromatography
-
Van Heukelem L, Lewitus AJ, Kana TM, Craft NE. Improved separations of phytoplankton pigments using temperature-controlled high performance liquid chromatography. Mar Ecol Prog Ser 1994, 114:303-313.
-
(1994)
Mar Ecol Prog Ser
, vol.114
, pp. 303-313
-
-
Van Heukelem, L.1
Lewitus, A.J.2
Kana, T.M.3
Craft, N.E.4
|