Identification of two flavin monooxygenases from an effluent treatment plant sludge metagenomic library

Bioresource Technology

Volumn 101, Issue 21, 2010, Pages 8481-8484

  Singh, Ajit ^a   Singh Chauhan, Nar ^a   Thulasiram, H V ^b   Taneja, Vibha ^a   Sharma, Rakesh ^a  

^a CSIR INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY   (India)

^b NATIONAL CHEMICAL LABORATORY   (India)

Author keywords

Indigo; Indirubin; Metagenome; Metagenomic; Monooxygenase

Indexed keywords

AMINO ACID SEQUENCE; BAEYER-VILLIGER MONOOXYGENASES; EFFLUENT TREATMENT PLANTS; ENCODING PROTEINS; FLAVIN-CONTAINING MONOOXYGENASE; INDIRUBIN; MESORHIZOBIUM LOTI; METAGENOMES; METAGENOMIC LIBRARIES; MONOOXYGENASES; OXYGENASES; SPHINGOMONAS;

AMINO ACIDS; EFFLUENTS; ESCHERICHIA COLI; ORGANIC ACIDS;

EFFLUENT TREATMENT;

B1 PROTEIN; B2 PROTEIN; FLAVIN MONOOXYGENASE; INDIRUBIN; INDOLE; ISATIN; OXYGENASE; PIGMENT; UNCLASSIFIED DRUG; UNSPECIFIC MONOOXYGENASE; INDIGO CARMINE; INDOLE DERIVATIVE; MIXED FUNCTION OXIDASE; SEWAGE;

AMINO ACID; CATALYST; CLONE; COLIFORM BACTERIUM; ENZYME ACTIVITY; FERMENTATION; GENE EXPRESSION; GENOME; PROTEIN; SLUDGE;

ACINETOBACTER; ARTICLE; BAEYER VILLIGER REACTION; BIOCATALYST; BIODEGRADATION; BORDETELLA BRONCHISEPTICA; BREVIBACTERIUM; CONTROLLED STUDY; DNA SEQUENCE; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE LIBRARY; GUINEA PIG; MESORHIZOBIUM; METAGENOMICS; MICROBIAL IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN MOTIF; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; RHODOCOCCUS; SACCHAROMYCES CEREVISIAE; SEWAGE EFFLUENT; SINORHIZOBIUM MELILOTI; SPHINGOMONAS; USTILAGO MAYDIS; AMINO ACID SEQUENCE; BIOSYNTHESIS; BIOTRANSFORMATION; CELL CLONE; CHEMISTRY; GENETICS; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PROCEDURES; SEWAGE; WATER MANAGEMENT;

AMINO ACID SEQUENCE; BIOTRANSFORMATION; CLONE CELLS; GENE LIBRARY; INDOLES; METAGENOMICS; MIXED FUNCTION OXYGENASES; MOLECULAR SEQUENCE DATA; PHYLOGENY; PIGMENTS, BIOLOGICAL; SEWAGE; WASTE DISPOSAL, FLUID; WATER PURIFICATION; INDIGO CARMINE;

ESCHERICHIA COLI; MESORHIZOBIUM LOTI; SPHINGOMONAS WITTICHII;

EID: 77954538642     PISSN: 09608524     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biortech.2010.06.025     Document Type: Article

References (21)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
2. Arora P.K., Kumar M., Chauhan A., Raghava G.P., Jain R.K. OxDBase: a database of oxygenases involved in biodegradation. BMC Res. Notes 2009, 2:67.
3. Berry A., Dodge T.C., Pepsin M., Weyler W. Application of metabolic engineering to improve both the production and use of biotech indigo. J. Ind. Microbiol. Biotechnol. 2002, 28:127-133.
4. Birve S.J., Selstam E., Johansson L.B. Secondary structure of NADPH: protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods. Biochem. J. 1996, 317:549-555.
5. Chauhan N.S., Ranjan R., Purohit H.J., Kalia V.C., Sharma R. Identification of genes conferring arsenic resistance to Escherichia coli from an effluent treatment plant sludge metagenomic library. FEMS Microbiol. Ecol. 2009, 67:130-139.
6. Choi H.S., Kim J.K., Cho E.H., Kin Y.C., Kin J.I., Kim S.W. A novel flavin-containing monooxygenase from Methylophaga sp. strain SK1 and its indigo synthesis in Escherichia coli. Biochem. Biophys. Res. Commun. 2003, 306:930-936.
7. Fraaije M.W., Kamerbeek N.M., van Berkel W.J., Janssen D.B. Identification of a Baeyer-Villiger monooxygenase sequence motif. FEBS Lett. 2002, 518:43-47.
8. Gillam E.M., Aguinaldo A.M., Notley L.M., Kim D., Mundkowski R.G., Volkov A.A., Arnold F.H., Soucek P., DeVoss J.J., Guengerich F.P. Formation of indigo by recombinant mammalian cytochrome P450. Biochem. Biophys. Res. Commun. 1999, 265:469-472.
9. Hoessel R., Leclerc S., Endicott J., Nobel M., Lawrie A., Tunnah P., Leost M., Damiens E., Marie D., Marko D., Niederberger E., Tang W., Eisenbrand G., Meijer L. Indirubin, the active constituent of a Chinese antileukaemia medicine, inhibits cyclin-dependent kinases. Nat. Cell Biol. 1999, 1:60-67.
10. Kim J.Y., Lee K., Kim Y., Kim C.-K., Lee K. Production of dyestuff from indole derivatives by naphthalene dioxygenase and toluene dioxygenase. Lett. Appl. Microbiol. 2003, 36:343-348.
11. Kunikata T., Tatefuji T., Aga H., Iwaki K., Ikeda M., Kurimoto M. Indirubin inhibits inflammatory reactions in delayed-type hypersensitivity. Eur. J. Pharmacol. 2000, 410:93-100.
12. Lee C.M., Yeo Y.S., Lee J.H., Kim S.J., Kim J.B., Han N.S., Koo B.S., Yoon S.H. Identification of a novel 4-hydroxyphenylpyruvate dioxygenase from the soil metagenome. Biochem. Biophys. Res. Commun. 2008, 370:322-326.
13. Lim H.K., Chung E.J., Kim J.C., Choi G.J., Jang K.S., Chung Y.R., Cho K.Y., Lee S.W. Characterization of a forest soil metagenome clone that confers indirubin and indigo production on Escherichia coli. Appl. Environ. Microbiol. 2005, 71:7768-7777.
14. Meyer A., Würsten M., Schmid A., Kohler H.P., Witholt B. Hydroxylation of indole by laboratory-evolved 2-hydroxybiphenyl 3-monooxygenase. J. Biol. Chem. 2002, 277:34161-34167.
15. Pathak H., Madamwar D. Biosynthesis of indigo dye by newly isolated naphthalene-degrading strain Pseudomonas sp. HOB1 and its application in dyeing cotton fabric. Appl. Biochem. Biotechnol. 2010, 160:1616-1626.
16. Ranjan R., Grover A., Kapardar R.K., Sharma R. Isolation of novel lipolytic genes from uncultured bacteria of pond water. Biochem. Biophys. Res. Commun. 2005, 335:57-65.
17. Torres Pazmiño D.E., Snajdrova R., Rial D.V., Mihovilovic M.D., Fraaije M.W. Altering the substrate specificity and enantioselectivity of phenylacetone monooxygenase by structure-inspired enzyme redesign. Adv. Synth. Catal. 2007, 349:1361-1368.
18. Travasso G., Santos S., Oliveira-Campos A., Raposo M., Prasitpan N. Indigo revisited. Adv. Colour Sci. Technol. 2003, 6:95-99.
19. van Berkel W.J., Kamerbeek N.M., Fraaije M.W. Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts. J. Biotechnol. 2006, 124:670-689.
20. van Hellemond E.W., Janssen D.B., Fraaije M.W. Discovery of a novel styrene monooxygenase originating from the metagenome. Appl. Environ. Microbiol. 2007, 73:5832-5839.
21. Wheeler D.L., Church D.M., Federhen S., Lash A.E., Madden T.L., Pontius J.U., Schuler G.D., Schriml L.M., Sequeira E., Tatusova T.A., Wagner L. Database resources of the National Center for Biotechnology. Nucleic Acids Res. 2003, 31:28-33.