-
1
-
-
0032564361
-
A heterodimeric DNA polymerase: Evidence that members of Euryarchaeota possess a distinct DNA polymerase
-
Cann, I. K., K. Komori, H. Toh, S. Kanai, and Y. Ishino. 1998. A heterodimeric DNA polymerase: evidence that members of Euryarchaeota possess a distinct DNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 95:14250-14255.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 14250-14255
-
-
Cann, I.K.1
Komori, K.2
Toh, H.3
Kanai, S.4
Ishino, Y.5
-
2
-
-
61349102407
-
Ribonuclease H: The enzymes in eukaryotes
-
Cerritelli, S. M., and R. J. Crouch. 2009. Ribonuclease H: the enzymes in eukaryotes. FEBS J. 276:1494-1505.
-
(2009)
FEBS J.
, vol.276
, pp. 1494-1505
-
-
Cerritelli, S.M.1
Crouch, R.J.2
-
3
-
-
0034805756
-
Archaeoglobus fulgidus RNase HII in DNA replication: Enzymological functions and activity regulation via metal cofactors
-
Chai, Q., J. Qiu, B. R. Chapados, and B. Shen. 2001. Archaeoglobus fulgidus RNase HII in DNA replication: enzymological functions and activity regulation via metal cofactors. Biochem. Biophys. Res. Commun. 286:1073-1081.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.286
, pp. 1073-1081
-
-
Chai, Q.1
Qiu, J.2
Chapados, B.R.3
Shen, B.4
-
4
-
-
0035937257
-
Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication
-
Chapados, B. R., Q. Chai, D. J. Hosfield, J. Qiu, B. Shen, and J. A. Tainer. 2001. Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication. J. Mol. Biol. 307:541-556.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 541-556
-
-
Chapados, B.R.1
Chai, Q.2
Hosfield, D.J.3
Qiu, J.4
Shen, B.5
Tainer, J.A.6
-
5
-
-
0024593905
-
Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: R(CGCGAAUUCGCG) and r(CGCGUAUACGCG)
-
Chou, S. H., P. Flynn, and B. Reid. 1989. Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG). Biochemistry 28:2422-2435.
-
(1989)
Biochemistry
, vol.28
, pp. 2422-2435
-
-
Chou, S.H.1
Flynn, P.2
Reid, B.3
-
6
-
-
0037346631
-
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi
-
Cohen, G. N., V. Barbe, D. Flament, M. Galperin, R. Heilig, O. Lecompte, O. Poch, D. Prieur, J. Querellou, R. Ripp, J. C. Thierry, J. Van der Oost, J. Weissenbach, Y. Zivanovic, and P. Forterre. 2003. An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol. Microbiol. 47:1495-1512.
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1495-1512
-
-
Cohen, G.N.1
Barbe, V.2
Flament, D.3
Galperin, M.4
Heilig, R.5
Lecompte, O.6
Poch, O.7
Prieur, D.8
Querellou, J.9
Ripp, R.10
Thierry, J.C.11
Van Der Oost, J.12
Weissenbach, J.13
Zivanovic, Y.14
Forterre, P.15
-
7
-
-
0020493719
-
The anatomy of A-, B-, and Z-DNA
-
Dickerson, R. E., H. R. Drew, B. N. Conner, R. M. Wing, A. V. Fratini, and M. L. Kopka. 1982. The anatomy of A-, B-, and Z-DNA. Science 216:475-485.
-
(1982)
Science
, vol.216
, pp. 475-485
-
-
Dickerson, R.E.1
Drew, H.R.2
Conner, B.N.3
Wing, R.M.4
Fratini, A.V.5
Kopka, M.L.6
-
8
-
-
0035171927
-
Characterization of two DNA polymerases from the hyperthermophilic euryarchaeon Pyrococcus abyssi
-
Gueguen, Y., J. L. Rolland, O. Lecompte, P. Azam, G. Le Romancer, D. Flament, J. P. Raffin, and J. Dietrich. 2001. Characterization of two DNA polymerases from the hyperthermophilic euryarchaeon Pyrococcus abyssi. Eur. J. Biochem. 268:5961-5969.
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 5961-5969
-
-
Gueguen, Y.1
Rolland, J.L.2
Lecompte, O.3
Azam, P.4
Le Romancer, G.5
Flament, D.6
Raffin, J.P.7
Dietrich, J.8
-
9
-
-
0031786215
-
Gene cloning and characterization of recombinant RNase HII from a hyperthermophilic archaeon
-
Haruki, M., K. Hayashi, T. Kochi, A. Muroya, Y. Koga, M. Morikawa, T. Imanaka, and S. Kanaya. 1998. Gene cloning and characterization of recombinant RNase HII from a hyperthermophilic archaeon. J. Bacteriol. 180:6207-6214.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6207-6214
-
-
Haruki, M.1
Hayashi, K.2
Kochi, T.3
Muroya, A.4
Koga, Y.5
Morikawa, M.6
Imanaka, T.7
Kanaya, S.8
-
10
-
-
0037032428
-
Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII
-
Haruki, M., Y. Tsunaka, M. Morikawa, and S. Kanaya. 2002. Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII. FEBS Lett. 531:204-208.
-
(2002)
FEBS Lett.
, vol.531
, pp. 204-208
-
-
Haruki, M.1
Tsunaka, Y.2
Morikawa, M.3
Kanaya, S.4
-
11
-
-
20444377771
-
The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication
-
Henneke, G., D. Flament, U. Hubscher, J. Querellou, and J. P. Raffin. 2005. The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication. J. Mol. Biol. 350:53-64.
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 53-64
-
-
Henneke, G.1
Flament, D.2
Hubscher, U.3
Querellou, J.4
Raffin, J.P.5
-
12
-
-
0034662744
-
Crystal structure of archaeal RNase HII: A homologue of human major RNase H
-
Lai, L., H. Yokota, L. W. Hung, R. Kim, and S. H. Kim. 2000. Crystal structure of archaeal RNase HII: a homologue of human major RNase H. Structure 8:897-904.
-
(2000)
Structure
, vol.8
, pp. 897-904
-
-
Lai, L.1
Yokota, H.2
Hung, L.W.3
Kim, R.4
Kim, S.H.5
-
13
-
-
9244224132
-
The heterodimeric primase of the hyperthermophilic archaeon Sulfolobus solfataricus possesses DNA and RNA primase, polymerase and 3′-terminal nucleotidyl transferase activities
-
Lao-Sirieix, S. H., and S. D. Bell. 2004. The heterodimeric primase of the hyperthermophilic archaeon Sulfolobus solfataricus possesses DNA and RNA primase, polymerase and 3′-terminal nucleotidyl transferase activities. J. Mol. Biol. 344:1251-1263.
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 1251-1263
-
-
Lao-Sirieix, S.H.1
Bell, S.D.2
-
14
-
-
36248984797
-
The heterodimeric primase from the euryarchaeon Pyrococcus abyssi: A multifunctional enzyme for initiation and repair?
-
Le Breton, M., G. Henneke, C. Norais, D. Flament, H. Myllykallio, J. Querellou, and J. P. Raffin. 2007. The heterodimeric primase from the euryarchaeon Pyrococcus abyssi: a multifunctional enzyme for initiation and repair? J. Mol. Biol. 374:1172-1185.
-
(2007)
J. Mol. Biol.
, vol.374
, pp. 1172-1185
-
-
Le Breton, M.1
Henneke, G.2
Norais, C.3
Flament, D.4
Myllykallio, H.5
Querellou, J.6
Raffin, J.P.7
-
15
-
-
0037295722
-
Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin
-
Matsunaga, F., C. Norais, P. Forterre, and H. Myllykallio. 2003. Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin. EMBO Rep. 4:154-158.
-
(2003)
EMBO Rep.
, vol.4
, pp. 154-158
-
-
Matsunaga, F.1
Norais, C.2
Forterre, P.3
Myllykallio, H.4
-
16
-
-
34548534895
-
A novel proteomic approach identifies new interaction partners for proliferating cell nuclear antigen
-
Meslet-Cladiére, L., C. Norais, J. Kuhn, J. Briffotaux, J. W. Sloostra, E. Ferrari, U. Hubscher, D. Flament, and H. Myllykallio. 2007. A novel proteomic approach identifies new interaction partners for proliferating cell nuclear antigen. J. Mol. Biol. 372:1137-1148.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 1137-1148
-
-
Meslet-Cladiére, L.1
Norais, C.2
Kuhn, J.3
Briffotaux, J.4
Sloostra, J.W.5
Ferrari, E.6
Hubscher, U.7
Flament, D.8
Myllykallio, H.9
-
18
-
-
0029959104
-
Calf RTH-1 nuclease can remove the initiator RNAs of Okazaki fragments by endonuclease activity
-
Murante, R. S., J. A. Rumbaugh, C. J. Barnes, J. R. Norton, and R. A. Bambara. 1996. Calf RTH-1 nuclease can remove the initiator RNAs of Okazaki fragments by endonuclease activity. J. Biol. Chem. 271:25888-25897.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 25888-25897
-
-
Murante, R.S.1
Rumbaugh, J.A.2
Barnes, C.J.3
Norton, J.R.4
Bambara, R.A.5
-
19
-
-
0035083849
-
Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses
-
Muroya, A., D. Tsuchiya, M. Ishikawa, M. Haruki, M. Morikawa, S. Kanaya, and K. Morikawa. 2001. Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses. Protein Sci. 10:707-714.
-
(2001)
Protein Sci.
, vol.10
, pp. 707-714
-
-
Muroya, A.1
Tsuchiya, D.2
Ishikawa, M.3
Haruki, M.4
Morikawa, M.5
Kanaya, S.6
Morikawa, K.7
-
20
-
-
77950406088
-
Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases
-
Nick McElhinny, S. A., B. E. Watts, D. Kumar, D. L. Watt, E. B. Lundstrom, P. M. Burgers, E. Johansson, A. Chabes, and T. A. Kunkel. 2010. Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases. Proc. Natl. Acad. Sci. U. S. A. 107:4949-4954.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 4949-4954
-
-
Nick McElhinny, S.A.1
Watts, B.E.2
Kumar, D.3
Watt, D.L.4
Lundstrom, E.B.5
Burgers, P.M.6
Johansson, E.7
Chabes, A.8
Kunkel, T.A.9
-
21
-
-
0032838944
-
Molecular diversities of RNases H
-
Ohtani, N., M. Haruki, M. Morikawa, and S. Kanaya. 1999. Molecular diversities of RNases H. J. Biosci. Bioeng. 88:12-19.
-
(1999)
J. Biosci. Bioeng.
, vol.88
, pp. 12-19
-
-
Ohtani, N.1
Haruki, M.2
Morikawa, M.3
Kanaya, S.4
-
22
-
-
45349093488
-
Junction ribonuclease: A ribonuclease HII orthologue from Thermus thermophilus HB8 prefers the RNA-DNA junction to the RNA/DNA heteroduplex
-
Ohtani, N., M. Tomita, and M. Itaya. 2008. Junction ribonuclease: a ribonuclease HII orthologue from Thermus thermophilus HB8 prefers the RNA-DNA junction to the RNA/DNA heteroduplex. Biochem. J. 412:517-526.
-
(2008)
Biochem. J.
, vol.412
, pp. 517-526
-
-
Ohtani, N.1
Tomita, M.2
Itaya, M.3
-
23
-
-
7444232276
-
Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii 7
-
DOI 10.1093/nar/gkh917
-
Ohtani, N., H. Yanagawa, M. Tomita, and M. Itaya. 2004. Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii 7. Nucleic Acids Res. 32:5809-5819. (Pubitemid 39619163)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.19
, pp. 5809-5819
-
-
Ohtani, N.1
Yanagawa, H.2
Tomita, M.3
Itaya, M.4
-
24
-
-
4344595870
-
Identification of the first archaeal type 1 RNase H gene from Halobacterium sp. NRC-1: Archaeal RNase HI can cleave an RNA-DNA junction
-
Ohtani, N., H. Yanagawa, M. Tomita, and M. Itaya. 2004. Identification of the first archaeal type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junction. Biochem. J. 381:795-802.
-
(2004)
Biochem. J.
, vol.381
, pp. 795-802
-
-
Ohtani, N.1
Yanagawa, H.2
Tomita, M.3
Itaya, M.4
-
25
-
-
34247628927
-
DNA polymerase switching on homotrimeric PCNA at the replication fork of the euryarchaea Pyrococcus abyssi
-
Rouillon, C., G. Henneke, D. Flament, J. Querellou, and J. P. Raffin. 2007. DNA polymerase switching on homotrimeric PCNA at the replication fork of the euryarchaea Pyrococcus abyssi. J. Mol. Biol. 369:343-355.
-
(2007)
J. Mol. Biol.
, vol.369
, pp. 343-355
-
-
Rouillon, C.1
Henneke, G.2
Flament, D.3
Querellou, J.4
Raffin, J.P.5
-
26
-
-
0030929525
-
Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing
-
Rumbaugh, J. A., R. S. Murante, S. Shi, and R. A. Bambara. 1997. Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing. J. Biol. Chem. 272:22591-22599.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22591-22599
-
-
Rumbaugh, J.A.1
Murante, R.S.2
Shi, S.3
Bambara, R.A.4
-
27
-
-
0041734767
-
Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus
-
Sato, A., A. Kanai, M. Itaya, and M. Tomita. 2003. Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus. Biochem. Biophys. Res. Commun. 309:247-252.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.309
, pp. 247-252
-
-
Sato, A.1
Kanai, A.2
Itaya, M.3
Tomita, M.4
-
28
-
-
0028038222
-
Misincorporation of nucleotides by calf thymus DNA primase and elongation of primers containing multiple noncognate nucleotides by DNA polymerase alpha
-
Sheaff, R. J., and R. D. Kuchta. 1994. Misincorporation of nucleotides by calf thymus DNA primase and elongation of primers containing multiple noncognate nucleotides by DNA polymerase alpha. J. Biol. Chem. 269:19225-19231.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 19225-19231
-
-
Sheaff, R.J.1
Kuchta, R.D.2
-
29
-
-
0014682495
-
Enzyme from calf thymus degrading the RNA moiety of DNA-RNA Hybrids: Effect on DNA-dependent RNA polymerase
-
Stein, H., and P. Hausen. 1969. Enzyme from calf thymus degrading the RNA moiety of DNA-RNA Hybrids: effect on DNA-dependent RNA polymerase. Science 166:393-395.
-
(1969)
Science
, vol.166
, pp. 393-395
-
-
Stein, H.1
Hausen, P.2
-
30
-
-
61349178533
-
Ribonuclease H: Molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes
-
Tadokoro, T., and S. Kanaya. 2009. Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes. FEBS J. 276:1482-1493.
-
(2009)
FEBS J.
, vol.276
, pp. 1482-1493
-
-
Tadokoro, T.1
Kanaya, S.2
-
31
-
-
0026328236
-
Fidelity of mammalian DNA replication and replicative DNA polymerases
-
Thomas, D. C., J. D. Roberts, R. D. Sabatino, T. W. Myers, C. K. Tan, K. M. Downey, A. G. So, R. A. Bambara, and T. A. Kunkel. 1991. Fidelity of mammalian DNA replication and replicative DNA polymerases. Biochemistry 30:11751-11759.
-
(1991)
Biochemistry
, vol.30
, pp. 11751-11759
-
-
Thomas, D.C.1
Roberts, J.D.2
Sabatino, R.D.3
Myers, T.W.4
Tan, C.K.5
Downey, K.M.6
So, A.G.7
Bambara, R.A.8
Kunkel, T.A.9
-
32
-
-
0017921516
-
Radiation-induced degradation of the sugar in model compounds and in DNA
-
Von Sonntag, C., and D. Schulte-Frohlinde. 1978. Radiation-induced degradation of the sugar in model compounds and in DNA. Mol. Biol. Biochem. Biophys. 27:204-226.
-
(1978)
Mol. Biol. Biochem. Biophys.
, vol.27
, pp. 204-226
-
-
Von Sonntag, C.1
Schulte-Frohlinde, D.2
|