메뉴 건너뛰기




Volumn 38, Issue SUPPL. 2, 2010, Pages

G-language genome analysis environment with REST and SOAP web service interfaces

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BINDING SITE; COMPUTER INTERFACE; COMPUTER PREDICTION; COMPUTER PROGRAM; DNA SEQUENCE; GENOME ANALYSIS; INFORMATION PROCESSING; INFORMATION RETRIEVAL; NUCLEOTIDE SEQUENCE; ONLINE SYSTEM; PRIORITY JOURNAL; WEB BROWSER; BACTERIAL GENOME; GENOMICS; INTERNET;

EID: 77954296653     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq315     Document Type: Article
Times cited : (11)

References (22)
  • 1
    • 0345743608 scopus 로고    scopus 로고
    • Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era
    • Kell,D.B. and Oliver,S.G. (2004) Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era. Bioessays, 26, 99-105.
    • (2004) Bioessays , vol.26 , pp. 99-105
    • Kell, D.B.1    Oliver, S.G.2
  • 2
    • 0037316319 scopus 로고    scopus 로고
    • G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining
    • Arakawa,K., Mori,K., Ikeda,K., Matsuzaki,T., Kobayashi,Y. and Tomita,M. (2003) G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining. Bioinformatics, 19, 305-306.
    • (2003) Bioinformatics , vol.19 , pp. 305-306
    • Arakawa, K.1    Mori, K.2    Ikeda, K.3    Matsuzaki, T.4    Kobayashi, Y.5    Tomita, M.6
  • 3
    • 33747863519 scopus 로고    scopus 로고
    • G-language System as a platform for large-scale analysis of high-throughput omics data
    • Arakawa,K. and Tomita,M. (2006) G-language System as a platform for large-scale analysis of high-throughput omics data. J. Pesticide Sci., 31, 282-288.
    • (2006) J. Pesticide Sci. , vol.31 , pp. 282-288
    • Arakawa, K.1    Tomita, M.2
  • 5
    • 70449353071 scopus 로고    scopus 로고
    • Computational genome analysis using the G-language system
    • Arakawa,K., Suzuki,H. and Tomita,M. (2008) Computational genome analysis using the G-language system. Genes Genomes Genomics, 2, 1-13.
    • (2008) Genes Genomes Genomics , vol.2 , pp. 1-13
    • Arakawa, K.1    Suzuki, H.2    Tomita, M.3
  • 6
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European molecular biology open software suite
    • Rice,P., Longden,I. and Bleasby,A. (2000) EMBOSS: the European molecular biology open software suite. Trends Genet., 16, 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 7
    • 33846200467 scopus 로고    scopus 로고
    • Noise-reduction filtering for accurate detection of replication termini in bacterial genomes
    • Arakawa,K., Saito,R. and Tomita,M. (2007) Noise-reduction filtering for accurate detection of replication termini in bacterial genomes. FEBS Lett., 581, 253-258.
    • (2007) FEBS Lett. , vol.581 , pp. 253-258
    • Arakawa, K.1    Saito, R.2    Tomita, M.3
  • 8
    • 74549117150 scopus 로고    scopus 로고
    • Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index
    • Arakawa,K., Suzuki,H. and Tomita,M. (2009) Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index. BMC Genomics, 10, 640.
    • (2009) BMC Genomics , vol.10 , pp. 640
    • Arakawa, K.1    Suzuki, H.2    Tomita, M.3
  • 9
    • 67649133907 scopus 로고    scopus 로고
    • The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection
    • Arakawa,K. and Tomita,M. (2007) The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection. Evol. Bioinform. Online, 3, 159-168.
    • (2007) Evol. Bioinform. Online , vol.3 , pp. 159-168
    • Arakawa, K.1    Tomita, M.2
  • 10
    • 2942582578 scopus 로고    scopus 로고
    • The 'weighted sum of relative entropy': a new index for synonymous codon usage bias
    • Suzuki,H., Saito,R. and Tomita,M. (2004) The 'weighted sum of relative entropy': a new index for synonymous codon usage bias. Gene, 335, 19-23.
    • (2004) Gene , vol.335 , pp. 19-23
    • Suzuki, H.1    Saito, R.2    Tomita, M.3
  • 11
    • 58749086048 scopus 로고    scopus 로고
    • Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes
    • Suzuki,H., Sota,M., Brown,C.J. and Top,E.M. (2008) Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. Nucleic Acids Res., 36, e147.
    • (2008) Nucleic Acids Res. , vol.36
    • Suzuki, H.1    Sota, M.2    Brown, C.J.3    Top, E.M.4
  • 12
    • 70449396756 scopus 로고    scopus 로고
    • A web server for interactive and zoomable Chaos game representation images
    • Arakawa,K., Oshita,K. and Tomita,M. (2009) A web server for interactive and zoomable Chaos game representation images. Source Code Biol. Med., 4, 6.
    • (2009) Source Code Biol. Med. , vol.4 , pp. 6
    • Arakawa, K.1    Oshita, K.2    Tomita, M.3
  • 14
    • 0037046558 scopus 로고    scopus 로고
    • Creating a bioinformatics nation
    • Stein,L. (2002) Creating a bioinformatics nation. Nature, 417, 119-120.
    • (2002) Nature , vol.417 , pp. 119-120
    • Stein, L.1
  • 18
    • 62749139603 scopus 로고    scopus 로고
    • myExperiment: Defining the Social Virtual Research Environment
    • IEEE Fourth International Conference. IEEE Computer Society, Los Alamos
    • De Roure,D., Goble,C., Bhagat,J., Cruickshank,D., Goderis,A., Michaelides,D. and Newman,D. (2008) myExperiment: Defining the Social Virtual Research Environment. In eScience '08. IEEE Fourth International Conference. IEEE Computer Society, Los Alamos, pp. 182-189.
    • (2008) eScience '08 , pp. 182-189
    • De Roure, D.1    Goble, C.2    Bhagat, J.3    Cruickshank, D.4    Goderis, A.5    Michaelides, D.6    Newman, D.7
  • 19
    • 59949087987 scopus 로고    scopus 로고
    • The design and realisation of the Virtual Research Environment for social sharing of workflows
    • De Roure,D., Goble,C. and Stevens,R. (2009) The design and realisation of the Virtual Research Environment for social sharing of workflows. Future Gener. Comp. Syst., 25, 561-567.
    • (2009) Future Gener. Comp. Syst. , vol.25 , pp. 561-567
    • De Roure, D.1    Goble, C.2    Stevens, R.3
  • 20
    • 0344906914 scopus 로고    scopus 로고
    • Consensus sequence Zen
    • Schneider,T.D. (2002) Consensus sequence Zen. Appl Bioinformatics, 1, 111-119.
    • (2002) Appl Bioinformatics , vol.1 , pp. 111-119
    • Schneider, T.D.1
  • 21
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • Lobry,J.R. (1996) Asymmetric substitution patterns in the two DNA strands of bacteria. Mol. Biol. Evol., 13, 660-665.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 660-665
    • Lobry, J.R.1
  • 22
    • 0023650543 scopus 로고
    • The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp,P.M. and Li,W.H. (1987) The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res., 15, 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.