-
1
-
-
70349882120
-
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses
-
Amit, I., Garber,M., Chevrier,N., Leite,A.P., Donner,Y., Eisenhaure,T., Guttman,M., Grenier,J.K., Li,W., Zuk,O. et al. (2009) Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses. Science, 326, 257-263.
-
(2009)
Science
, vol.326
, pp. 257-263
-
-
Amit, I.1
Garber, M.2
Chevrier, N.3
Leite, A.P.4
Donner, Y.5
Eisenhaure, T.6
Guttman, M.7
Grenier, J.K.8
Li, W.9
Zuk, O.10
-
2
-
-
1842584947
-
Applied bioinformatics for the identification of regulatory elements
-
Wasserman,W.W. and Sandelin,A. (2004) Applied bioinformatics for the identification of regulatory elements. Nat. Rev. Genet., 5, 276-287.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 276-287
-
-
Wasserman, W.W.1
Sandelin, A.2
-
3
-
-
2442546516
-
Identification of transcription factor binding sites upstream of human genes regulated by the phosphatidylinositol 3-kinase and mek/erk signaling pathways
-
Tullai,J., Schaffer,M., Mullenbrock,S., Kasif,S. and Cooper,G. (2004) Identification of transcription factor binding sites upstream of human genes regulated by the phosphatidylinositol 3-kinase and mek/erk signaling pathways. J. Biol. Chem., 279, 20167-20177.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 20167-20177
-
-
Tullai, J.1
Schaffer, M.2
Mullenbrock, S.3
Kasif, S.4
Cooper, G.5
-
4
-
-
13744251104
-
Inferring combinatorial regulation of transcription in silico
-
Blüthgen,N., Kiełbasa,S.M. and Herzel,H. (2005) Inferring combinatorial regulation of transcription in silico. Nucleic Acids Res., 33, 272-279.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 272-279
-
-
Blüthgen, N.1
Kiełbasa, S.M.2
Herzel, H.3
-
5
-
-
44349161052
-
Seed-based systematic discovery of specific transcription factor target genes
-
Mrowka,R., Blüthgen,N. and Fähling,M. (2008) Seed-based systematic discovery of specific transcription factor target genes. FEBS J., 275, 3178-3192.
-
(2008)
FEBS J
, vol.275
, pp. 3178-3192
-
-
Mrowka, R.1
Blüthgen, N.2
Fähling, M.3
-
6
-
-
0038185378
-
Genomic targets of the human c-myc protein
-
Fernandez,P.C., Frank,S.R., Wang,L., Schroeder,M., Liu,S., Greene,J., Cocito,A. and Amati,B. (2003) Genomic targets of the human c-myc protein. Genes Dev., 17, 1115-1129.
-
(2003)
Genes Dev
, vol.17
, pp. 1115-1129
-
-
Fernandez, P.C.1
Frank, S.R.2
Wang, L.3
Schroeder, M.4
Liu, S.5
Greene, J.6
Cocito, A.7
Amati, B.8
-
7
-
-
4043163461
-
E2f target genes: Unraveling the biology
-
Bracken,A.P., Ciro,M., Cocito,A. and Helin,K. (2004) E2f target genes: Unraveling the biology. Trends Biochem. Sci., 29, 409-17.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 409-417
-
-
Bracken, A.P.1
Ciro, M.2
Cocito, A.3
Helin, K.4
-
8
-
-
11844251170
-
The nf-kappab/ikappab signaling system: A molecular target in breast cancer therapy
-
Wu,J.T. and Kral,J.G. (2005) The nf-kappab/ikappab signaling system: A molecular target in breast cancer therapy. J. Surg. Res., 123, 158-169.
-
(2005)
J. Surg. Res.
, vol.123
, pp. 158-169
-
-
Wu, J.T.1
Kral, J.G.2
-
9
-
-
0142166332
-
Targeting HIF-1 for cancer therapy
-
Semenza,G.L. (2003) Targeting HIF-1 for cancer therapy. Nat. Rev. Cancer, 3, 721-732.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 721-732
-
-
Semenza, G.L.1
-
10
-
-
0034684619
-
Ets target genes: Past, present and future
-
Sementchenko,V.I. and Watson,D.K. (2000) Ets target genes: Past, present and future. Oncogene., 19, 6533-6548.
-
(2000)
Oncogene
, vol.19
, pp. 6533-6548
-
-
Sementchenko, V.I.1
Watson, D.K.2
-
11
-
-
33846036710
-
The stanford microarray database: Implementation of new analysis tools and open source release of software
-
Demeter,J., Beauheim,C., Gollub,J., Hernandez-Boussard,T., Jin,H., Maier,D., Matese,J.C., Nitzberg,M., Wymore,F., Zachariah,Z.K. et al. (2007) The stanford microarray database: Implementation of new analysis tools and open source release of software. Nucleic Acids Res., 35, D766-D770.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Demeter, J.1
Beauheim, C.2
Gollub, J.3
Hernandez-Boussard, T.4
Jin, H.5
Maier, D.6
Matese, J.C.7
Nitzberg, M.8
Wymore, F.9
Zachariah, Z.K.10
-
12
-
-
0141993704
-
A genecoexpression network for global discovery of conserved genetic modules
-
Stuart,J.M., Segal,E., Koller,D. and Kim,S.K. (2003) A genecoexpression network for global discovery of conserved genetic modules. Science, 302, 249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
13
-
-
58149185123
-
Ensembl 2009
-
Hubbard,T.J.P., Aken,B.L., Ayling,S., Ballester,B., Beal,K., Bragin,E., Brent,S., Chen,Y., Clapham,P., Clarke,L. et al. (2009) Ensembl 2009. Nucleic Acids Res., 37, D690-D697.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hubbard, T.J.P.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
Bragin, E.6
Brent, S.7
Chen, Y.8
Clapham, P.9
Clarke, L.10
-
14
-
-
33846700587
-
Predicting transcription factor affinities to dna from a biophysical model
-
Roider,H.G., Kanhere,A., Manke,T. and Vingron,M. (2007) Predicting transcription factor affinities to dna from a biophysical model. Bioinformatics, 23, 134-141.
-
(2007)
Bioinformatics
, vol.23
, pp. 134-141
-
-
Roider, H.G.1
Kanhere, A.2
Manke, T.3
Vingron, M.4
-
15
-
-
33644876958
-
Transfac and its module transcompel: Transcriptional gene regulation in eukaryotes
-
Matys,V., Kel-Margoulis,O.V., Fricke,E., Liebich,I., Land,S., Barre-Dirrie,A., Reuter,I., Chekmenev,D., Krull,M., Hornischer,K. et al. (2006) Transfac and its module transcompel: Transcriptional gene regulation in eukaryotes. Nucleic Acids Res., 34, D108-D110.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
-
16
-
-
38149065301
-
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana
-
Redestig,H., Weicht,D., Selbig,J. and Hannah,M.A. (2007) Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics, 8, 454.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 454
-
-
Redestig, H.1
Weicht, D.2
Selbig, J.3
Hannah, M.A.4
-
17
-
-
33745038921
-
Ranked prediction of p53 targets using hidden variable dynamic modeling
-
Barenco,M., Tomescu,D., Brewer,D., Callard,R., Stark,J. and Hubank,M. (2006) Ranked prediction of p53 targets using hidden variable dynamic modeling. Genome Biol., 7, R25.
-
(2006)
Genome Biol
, vol.7
-
-
Barenco, M.1
Tomescu, D.2
Brewer, D.3
Callard, R.4
Stark, J.5
Hubank, M.6
-
18
-
-
18244385269
-
Adult-onset primary open-angle glaucoma caused by mutations in optineurin
-
Rezaie,T., Child,A., Hitchings,R., Brice,G., Miller,L., Coca- Prados,M., Héon,E., Krupin,T., Ritch,R. et al. (2002) Adult-onset primary open-angle glaucoma caused by mutations in optineurin. Science, 295, 1077-1079.
-
(2002)
Science
, vol.295
, pp. 1077-1079
-
-
Rezaie, T.1
Child, A.2
Hitchings, R.3
Brice, G.4
Miller, L.5
Coca- Prados, M.6
Héon, E.7
Krupin, T.8
Ritch, R.9
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