Characterization of Wuhan Nodavirus subgenomic RNA3 and the RNAi inhibition property of its encoded protein B2

Virus Research

Volumn 151, Issue 2, 2010, Pages 153-161

  Cai, Dawei ^a   Qiu, Yang ^a   Qi, Nan ^a   Yan, Ran ^a   Lin, Meijuan ^a   Nie, Dongbo ^a   Zhang, Jiamin ^a   Hu, Yuanyang ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

Protein B2; Subgenomic RNA3; Wuhan Nodavirus

Indexed keywords

CAPSID PROTEIN; NONSTRUCTURAL PROTEIN 1; NONSTRUCTURAL PROTEIN 2; PROTEIN A; PROTEIN ALPHA; UNCLASSIFIED DRUG; VIRUS RNA; VIRUS SUBGENOMIC RNA3; SMALL INTERFERING RNA; VIRUS PROTEIN;

ARTICLE; BUTTERFLY; CELL CULTURE; CODON; CONTROLLED STUDY; DROSOPHILA; GENE IDENTIFICATION; GENE STRUCTURE; LARVA; NODAVIRUS; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PIERIS RAPAE; PRIORITY JOURNAL; PROTEIN EXPRESSION; RNA INTERFERENCE; VIRUS DETECTION; VIRUS REPLICATION; WESTERN BLOTTING; WUHAN NODAVIRUS; ANIMAL; BIOSYNTHESIS; CHINA; GENE SILENCING; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; LEPIDOPTERA; VIROLOGY;

ANIMALS; BLOTTING, NORTHERN; CHINA; GENE SILENCING; LARVA; LEPIDOPTERA; NODAVIRIDAE; RNA, SMALL INTERFERING; RNA, VIRAL; VIRAL PROTEINS;

HEXAPODA; NODAVIRIDAE; PIERIS RAPAE;

EID: 77954212824     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2010.04.010     Document Type: Article

References (44)

1. Albarino C.G., Price B.D., Eckerle L.D., Ball L.A. Characterization and template properties of RNA dimers generated during flock house virus RNA replication. Virology 2001, 289(2):269-282.
2. Ball L.A. Requirements for the self-directed replication of flock house virus RNA 1. J. Virol. 1995, 69(2):720-727.
3. Ball L.A., Johnson K.L. Reverse genetics of nodaviruses. Adv. Virus Res. 1999, 53:229-244.
4. Bothner B., Dong X.F., Bibbs L., Johnson J.E., Siuzdak G. Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry. J. Biol. Chem. 1998, 273(2):673-676.
5. Chao J.A., Lee J.H., Chapados B.R., Debler E.W., Schneemann A., Williamson J.R. Dual modes of RNA-silencing suppression by Flock House virus protein B2. Nat. Struct. Mol. Biol. 2005, 12(11):952-957.
6. Dasmahapatra B., Dasgupta R., Ghosh A., Kaesberg P. Structure of the black beetle virus genome and its functional implications. J. Mol. Biol. 1985, 182(2):183-189.
7. Eckerle L.D., Albarino C.G., Ball L.A. Flock House virus subgenomic RNA3 is replicated and its replication correlates with transactivation of RNA2. Virology 2003, 317(1):95-108.
8. Fenner B.J., Goh W., Kwang J. Dissection of double-stranded RNA binding protein B2 from betanodavirus. J. Virol. 2007, 81(11):5449-5459.
9. Fenner B.J., Thiagarajan R., Chua H.K., Kwang J. Betanodavirus B2 is an RNA interference antagonist that facilitates intracellular viral RNA accumulation. J. Virol. 2006, 80(1):85-94.
10. Friesen P.D., Rueckert R.R. Synthesis of Black Beetle Virus proteins in cultured Drosophila cells: differential expression of RNAs 1 and 2. J. Virol. 1981, 37(3):876-886.
11. Gallagher T.M., Friesen P.D., Rueckert R.R. Autonomous replication and expression of RNA 1 from Black Beetle Virus. J. Virol. 1983, 46(2):481-489.
12. Garzon S., Charpentier G., Kurstak E. Morphogenesis of the nodamura virus in the larbae of the lepidopteran Galleria mellonella (L.). Arch. Virol. 1978, 56(1-2):61-76.
13. Guarino L.A., Ghosh A., Dasmahapatra B., Dasgupta R., Kaesberg P. Sequence of the black beetle virus subgenomic RNA and its location in the viral genome. Virology 1984, 139(1):199-203.
14. Harper, T.A., 1994. Characterization of their proteins encoded from the nodaviral subgenomic RNA. PhD Thesis, University of Wisconsin, Madison.
15. Ishikawa T., Matsumoto A., Kato T., Togashi S., Ryo H., Ikenaga M., Todo T., Ueda R., Tanimura T. DCRY is a Drosophila photoreceptor protein implicated in light entrainment of circadian rhythm. Genes Cells 1999, 4(1):57-65.
16. Iwamoto T., Mise K., Mori K., Arimoto M., Nakai T., Okuno T. Establishment of an infectious RNA transcription system for Striped jack nervous necrosis virus, the type species of the betanodaviruses. J. Gen. Virol. 2001, 82(Pt 11):2653-2662.
17. Iwamoto T., Mise K., Takeda A., Okinaka Y., Mori K., Arimoto M., Okuno T., Nakai T. Characterization of Striped jack nervous necrosis virus subgenomic RNA3 and biological activities of its encoded protein B2. J. Gen. Virol. 2005, 86(Pt 10):2807-2816.
18. Johnson K.L., Price B.D., Ball L.A. Recovery of infectivity from cDNA clones of nodamura virus and identification of small nonstructural proteins. Virology 2003, 305(2):436-451.
19. Johnson K.L., Price B.D., Eckerle L.D., Ball L.A. Nodamura virus nonstructural protein B2 can enhance viral RNA accumulation in both mammalian and insect cells. J. Virol. 2004, 78(12):6698-6704.
20. Johnson K.N., Ball L.A. Recovery of infectious pariacoto virus from cDNA clones and identification of susceptible cell lines. J. Virol. 2001, 75(24):12220-12227.
21. Johnson K.N., Ball L.A. Virions of Pariacoto virus contain a minor protein translated from the second AUG codon of the capsid protein open reading frame. J. Gen. Virol. 2003, 84(Pt 10):2847-2852.
22. Johnson K.N., Johnson K.L., Dasgupta R., Gratsch T., Ball L.A. Comparisons among the larger genome segments of six nodaviruses and their encoded RNA replicases. J. Gen. Virol. 2001, 82(Pt 8):1855-1866.
23. Johnson K.N., Zeddam J.L., Ball L.A. Characterization and construction of functional cDNA clones of Pariacoto virus, the first Alphanodavirus isolated outside Australasia. J. Virol. 2000, 74(11):5123-5132.
24. Kondo T., Inagaki S., Yasuda K., Kageyama Y. Rapid construction of Drosophila RNAi transgenes using pRISE, a P-element-mediated transformation vector exploiting an in vitro recombination system. Genes Genet. Syst. 2006, 81(2):129-134.
25. Korber S., Shaik Syed Ali P, Chen J.C. Structure of the RNA-binding domain of Nodamura Virus Protein B2, a suppressor of RNA interference (dagger), (double dagger). Biochemistry 2009, 48(11):2307-2309.
26. Kozak M. Initiation of translation in prokaryotes and eukaryotes. Gene 1999, 234(2):187-208.
27. Li H., Li W.X., Ding S.W. Induction and suppression of RNA silencing by an animal virus. Science 2002, 296(5571):1319-1321.
28. Li L.L., Chen Q.H. Continuous culture of embryos cells from Pieris rapae. J. Central China Normal Univ. 1995, 29:364-366.
29. Lingel A., Simon B., Izaurralde E., Sattler M. The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition. EMBO Rep. 2005, 6(12):1149-1155.
30. Liu C., Zhang J., Wang J., Lu J., Chen W., Cai D., Hu Y. Sequence analysis of coat protein gene of Wuhan nodavirus isolated from insect. Virus Res. 2006, 121(1):17-22.
31. Liu C., Zhang J., Yi F., Wang J., Wang X., Jiang H., Xu J., Hu Y. Isolation and RNA1 nucleotide sequence determination of a new insect nodavirus from Pieris rapae larvae in Wuhan city, China. Virus Res. 2006, 120(1-2):28-35.
32. Ou M.C., Chen Y.M., Jeng M.F., Chu C.J., Yang H.L., Chen T.Y. Identification of critical residues in nervous necrosis virus B2 for dsRNA-binding and RNAi-inhibiting activity through by bioinformatic analysis and mutagenesis. Biochem. Biophys. Res. Commun. 2007, 361(3):634-640.
33. Perez-Filgueira D.M., Gonzalez-Camacho F., Gallardo C., Resino-Talavan P., Blanco E., Gomez-Casado E., Alonso C., Escribano J.M. Optimization and validation of recombinant serological tests for African Swine Fever diagnosis based on detection of the p30 protein produced in Trichoplusia ni larvae. J. Clin. Microbiol. 2006, 44(9):3114-3121.
34. Reynolds E.S. The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. J. Cell Biol. 1963, 17:208-212.
35. Schneemann A., Reddy V., Johnson J.E. The structure and function of nodavirus particles: a paradigm for understanding chemical biology. Adv. Virus Res. 1998, 50:381-446.
36. Schneemann A., Zhong W., Gallagher T.M., Rueckert R.R. Maturation cleavage required for infectivity of a nodavirus. J. Virol. 1992, 66(11):6728-6734.
37. Schneider I. Cell lines derived from late embryonic stages of Drosophila melanogaster. J. Embryol. Exp. Morphol. 1972, 27(2):353-365.
38. Sommerset I., Nerland A.H. Complete sequence of RNA1 and subgenomic RNA3 of Atlantic halibut nodavirus (AHNV). Dis. Aquat. Org. 2004, 58(2-3):117-125.
39. Sullivan C.S., Ganem D. A virus-encoded inhibitor that blocks RNA interference in mammalian cells. J. Virol. 2005, 79(12):7371-7379.
40. Usui T., Shima Y., Shimada Y., Hirano S., Burgess R.W., Schwarz T.L., Takeichi M., Uemura T. Flamingo, a seven-pass transmembrane cadherin, regulates planar cell polarity under the control of Frizzled. Cell 1999, 98(5):585-595.
41. van Poelwijk F., Broer R., Belsham G.J., Oudshoorn P., Vlak J.M., Goldbach R.W. A hybrid baculovirus-bacteriophage T7 transient expression system. Biotechnology (NY) 1995, 13(3):261-264.
42. Zeddam J.L., Rodriguez J.L., Ravallec M., Lagnaoui A. A noda-like virus isolated from the sweetpotato pest spodoptera eridania (Cramer) (Lep.; noctuidae). J. Invertebr. Pathol. 1999, 74(3):267-274.
43. Zhong G.H., Hu M.Y., Weng Q.F., Ma A.Q., Xu W.S. Laboratory and field evaluations of extracts from Rhododendron molle flowers as insect growth regulator to imported cabbage worm, Pieris rapae L. (Lepidoptera: Pieridae). J. Appl. Ent. 2001, 125:563-569.
44. Zhong W., Rueckert R.R. Flock house virus: down-regulation of subgenomic RNA3 synthesis does not involve coat protein and is targeted to synthesis of its positive strand. J. Virol. 1993, 67(5):2716-2722.