Using DNA barcodes to connect adults and early life stages of marine fishes from the Yucatan Peninsula, Mexico: Potential in fisheries management

Marine and Freshwater Research

Volumn 61, Issue 6, 2010, Pages 665-671

  Valdez Moreno, Martha ^a   Vásquez Yeomans, Lourdes ^a   Elías Gutírrez, Manuel ^a   Ivanova, Natalia V ^b   Hebert, Paul D N ^b  

^a EL COLEGIO DE LA FRONTERA SUR   (Mexico)

^b UNIVERSITY OF GUELPH   (Canada)

Author keywords

COI; coxI; Cytochrome c oxidase; identification; mitochondrial DNA

Indexed keywords

CONSERVATION MANAGEMENT; CYTOCHROME; ENDANGERED SPECIES; FISHERY MANAGEMENT; IDENTIFICATION KEY; LIFE HISTORY; MARINE ECOSYSTEM; MITOCHONDRIAL DNA; PERCIFORM; RANGE EXPANSION; RARE SPECIES; SPAWNING; SPECIES DIVERSITY; SPECIES INVENTORY; SYMPATRY;

CARIBBEAN COAST [MEXICO]; MEXICO [NORTH AMERICA]; YUCATAN PENINSULA;

ALBULA; EUCINOSTOMUS; FLORIDICHTHYS; LABRIDAE; LACHNOLAIMUS MAXIMUS; PISCES; TELEOSTEI;

EID: 77954122073     PISSN: 13231650     EISSN: None     Source Type: Journal    
DOI: 10.1071/MF09222     Document Type: Article

References (62)

1. Adams, A. J., Wolfe, R. K., Tringali, M. D., Wallace, E., and Kellison, G. T. (2007). Rethinking the status of Albula spp. biologyin the Caribbean and western Atlantic. In 'The Biology and Management of the World Tarpon and Bonefish Fisheries'. (Ed. J. S. Ault.) pp. 203-214. (CRC Press: Boca Raton, FL.)
2. Ault, J. S., Humston, R., Larkin, M. F., Perusquia, E., Farmer, N. A., et al. (2007). Population dynamics and resource ecology of Atlantic tarpon and bonefish. In 'The Biology and Management of the World Tarpon and Bonefish Fisheries'. (Ed. J. S. Ault.) pp. 215-256. (CRC Press: Boca Raton, FL.)
3. Baldwin, C. C., Mounts, J. H., Smith, D. G., and Weigt, L. A. (2009). Genetic identification and color descriptions of early life-history stages of Belizean Phaeoptyx and Astrapogon (Teleostei: Apogonidae) with comments on identification of adult Phaeoptyx. Zootaxa 2008, 1-22.
4. Bowen, B. W., Karl, S. A., and Pfeiler, E. (2007). Resolving evolutionary lineages and taxonomy of bonefishes (Albula spp.). In 'The Biology and Management of the World Tarpon and Bonefish Fisheries'. (Ed. J. S. Ault.) pp. 147-154. (CRC Press: Boca Raton, FL.)
5. Carrillo, L., Vásquez-Yeomans, L., and de Jesús Navarrete, A. (2008). La incierta vida de las larvas marinas. Ecofronteras 34, 18-20.
6. Castro-Aguirre, J. L., Espinosa-Pérez, H., and Schmitter-Soto, J. J. (1999). 'Ictiofauna Estuarina Lagunar y Vicaria de México.' (Noriega-Limusa/ IPN: México, D.F.)
7. Colborn, J., Crabtree, R. E., Shaklee, J. B., Pfeiler, E., and Bowen, B. W. (2001). The evolutionary enigma of bonefishes (Albula spp.): cryptic species and ancient separations in a globally distributed shorefish. Evolution 55, 807-820. doi:10.1554/0014-3820(2001)055[0807:TEEOBA] 2.0.CO;2 (Pubitemid 32464104)
8. Danylchuk, S., Danylchuk,A.J., Cooke, S.J., Goldberg,T.L., Koppelman, J., and Philipp, D. P. (2007). Effects of recreational angling on the postrelease behavior and predation of bonefish (Albula vulpes): the role of equilibrium at the time of release. Journal of Experimental Marine Biology and Ecology 346, 127-133. doi:10.1016/J.JEMBE.2007. 03.008 (Pubitemid 46726364)
9. Escobar-Fernández, R., and Siri, M. (1997). 'Nombres Vernáculos y Científicos de los Peces del Pacífico Mexicano.' (Universidad Autónoma de Baja California, Instituto de Investigaciones Oceanológicas, Sociedad Ictiológica Mexicana, A.C.: México.)
10. Fahay, M. P. (2007). 'Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras).' (Northwest Atlantic Fisheries Organization: Nova Scotia, Canada.)
11. Floeter, S. R., Rocha, L. A., Robertson, D. R., Joyeux, J. C., Smith-Vaniz, W. F., et al. (2008). Atlantic reef fish biogeography and evolution. Journal of Biogeography 35, 22-47.
12. Fox, C. J., Taylor, M. I., Pereyra, R., Villasana, M. I., and Rico, C. (2005). TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods. Molecular Ecology 14, 879-884. doi:10.1111/J.1365-294X.2005.02439.X (Pubitemid 40346479)
13. Froese, R., and Pauly, D. (2006). FishBase. Available at http://www. fishbase.org [accessed August 2009].
14. Gregory, T. R. (2005). DNA barcoding does not compete with taxonomy. Nature 434, 1067. doi:10.1038/4341067B
15. Hajibabaei, M., deWaard, J. R., Ivanova, N. V., Ratnasingham, S., Dooh, R. T., Kirk, S. L., Mackie, P. M., and Hebert, P. D. N. (2005). Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360, 1959-1967. doi:10.1098/RSTB.2005.1727 (Pubitemid 44365056)
16. Hidaka, K., Iwatsuki, Y., and Randall, J. E. (2008). A review of the Indo-Pacific bonefishes of the Albula argentea complex, with a description of a new species. Ichthylogical Research 55, 53-64. doi:10.1007/S10228-007-0010-5 (Pubitemid 351313841)
17. Ivanova, N. V., de Waard, J. R., and Hebert, P. D. N. (2006). An inexpensive, automation-friendly protocol forrecovering high-quality DNA.Molecular Ecology Notes 6, 998-1002. doi:10.1111/J.1471-8286.2006.01428.X (Pubitemid 44807923)
18. Ivanova, N. V., Zemlak, T. S., Hanner, R. H., and Hebert, P. D. N. (2007). Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes 7, 544-548. doi:10.1111/J.1471-8286.2007.01748.X (Pubitemid 47035520)
19. Jiménez-Rosenberg, S. P. A., González-Navarro, E. A., and Saldierna-Martínez, R. J. (2006). Larval, prejuvenile and juvenile development of Eucinostomus currani. Journal of Fish Biology 69, 28-37. doi:10.1111/ J.0022-1112.2006.01029.X (Pubitemid 44365983)
20. Kendall, A. W., and Matarese, A. C. (1994). Status of early life history descriptions of marine teleosts. Fishery Bulletin 92, 725-736.
21. Kimura, M. (1980). A simple method of estimating evolutionary rate of base substitutions through comparative studies. Journal of Molecular Evolution 16, 111-120. doi:10.1007/BF01731581 (Pubitemid 11166431)
22. Lavett, S. C., Tyler, J. C., Davis, P. W., Jones, S. R., Smith, G. D., and Baldwin, C.A. (2003). Fishes of the Pelican Cays, Belize. Atoll Research Bulletin 497, 1-88.
23. Leis, J. M., and Carson-Ewart, B. M. (2000). 'The Larvae of Indo-Pacific Coastal Fishes: An Identification Guide to Marine Fish Larvae.' (Brill: Leiden, The Netherlands.)
24. McBride, R. H., and Horodysky, A. J. (2004). Mechanisms maintaining sympatric distributions of two ladyfish (Elopidae: Elops) morphs in the Gulf of Mexico and western North Atlantic Ocean. Limnology and Oceanography 49, 1173-1181.
25. Mojica, R., Shenker, J. M., Harnden, C. W., and Wagner, D. E. (1995). Recruitment of bonefish, Albula vulpes around Lee Stocking Island, Bahamas. Fishery Bulletin 93, 666-674. (Pubitemid 3000517)
26. Moser, H. G. (1996). 'The Early Stages of Fishes in the California Current.' (CALCOFI Atlas: La Jolla, CA.)
27. Moura, T., Silva, M. C., Figueiredo, I., Neves, A., Muñoz, P. D., Coelho, M. M., and Gordo, L. S. (2008). Molecular barcoding of north-east Atlantic deep-water sharks: species identification and application to fisheries management and conservation. Marine and Freshwater Research 59, 214-223. doi:10.1071/MF07192 (Pubitemid 351652119)
28. Nelson, J. S. (2006). 'Fishes of the World.' 3rd edn. (J. Wiley and Sons: New York.)
29. Pegg, G. G., Sinclair, B., Briskey, L., and Aspden, W. J. (2006). MtDNA barcode identification of fish larvae in the southern Great Barrier Reef, Australia. Scientia Marina 70, 7-12. (Pubitemid 44650357)
30. Pfeiler, E. (2008). Resurrection of the name Albula pacifica (Beebe, 1942) for the shafted bonefish (Albuliformes: Albulidae) from the eastern Pacific. Revista de Biologia Tropical 56, 839-844.
31. Pfeiler, E., Bitler, B. G., Ulloa, R., van der Heiden, A.M., and Hastings,P.A. (2008). Molecular identification of the bonefish Albula esuncula (Albuliformes: Albulidae) from the tropical eastern Pacific, with comments on distribution and morphology. Copeia 2008, 763-770. doi:10.1643/ CG-07-113
32. Powell, A. B., and Greene, M. D. (2006). Gerreidae: Mojarras. In 'Early Stages of Atlantic Fishes: An Identification Guide for Western Central North Atlantic'. (Ed. W. J. Richards.) pp. 1591-1596. (CRC Press: Boca Raton, FL.)
33. Quiroz-Vázquez, P., and Elías-Gutiérrez, M. (2009). A new species of the freshwater cladoceran genus Scapholeberis Schoedler, 1858 (Cladocera: Anomopoda) from the semidesert northern Mexico, highlighted by DNA barcoding. Zootaxa 2236, 50-64.
34. Ratnasingham, S., and Hebert, P. D. N. (2007). BOLD: the barcode of life data system (www.barcodinglife.org). Molecular Ecology Notes 7, 355-364. doi:10.1111/J.1471-8286.2007.01678.X (Pubitemid 46714172)
35. Richards, W. J. (1985). Status of the identification of the early life stages of fishes. Bulletin of Marine Science 37, 756-760.
36. Richards, W. J. (2006). 'Early Stages of Atlantic Fishes: An Identification Guide for Western Central North Atlantic.' (Taylor and Francis: Boca Raton, FL.)
37. Rivas, L. R., and Warlen, M. (1967). Systematics and biology of the bonefish, Albula nemoptera (Fowler). US Fishery Bulletin 66, 251-258.
38. Rock, J., Costa, F. O., Walker, D. I., North, A. W., Hutchinson, W. F., and Carvalho, G. R. (2008). DNA barcodes of fish of the Scotia Sea, Antarctica, indicate priority groups for taxonomic and systematics focus. Antarctic Science 20, 253-262. doi:10.1017/S0954102008001120 (Pubitemid 351704863)
39. Saitou, N., and Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
40. Schlei, O. L., Crete-Lafreniere, A., Whiteley, A. R., Brown, R. J., Olsen, J. B., Bernatchez, L., and Wenburg,J.K. (2008). DNA barcodingofeight North American coregonine species. Molecular Ecology Resources 8, 1212-1218. doi:10.1111/J.1755-0998.2008.02350.X
41. Schmitter-Soto, J. J. (1998). 'Catálogo de los Peces Continentales de Quintana Roo.' (El Colegio de la Frontera Sur: San Cristóbal de las Casas, México.)
42. Schmitter-Soto, J. J., Vásquez-Yeomans, L., Aguilar-Pereira, A., Curiel-Mondragón, C., and Caballero Vázquez, J. A. (2000). Lista de peces marinos del Caribe mexicano. Anales del Instituto de Biología Serie Zoologí a 71, 143-177.
43. Schmitter-Soto, J. J., Vásquez-Yeomans, L., Pimentel-Cadena, E., Herrera-Pavón, R., Paz, G., and García-Téllez, N. (2009). In 'El sistema ecológico de la bahía de Chetumal/Corozal: Costa occidental del Mar Caribe (2009)'. (Eds J. Espinoza, G. Islebe and H. Hernández.) pp. 102-114. (ECOSUR: Chetumal, Mexico.)
44. Shaklee, J. B., and Tamaru, C. S. (1981). Biochemical and morphological evolution of Hawaiian bonefishes (Albula). Systematic Zoology 30, 125-146. doi:10.2307/2992412
45. Smith, D. G. (1989). Order Elopiformes; Families Elopidae, Megalopidae, and Albulidae: Leptocephali. In 'Fishes of the Western North Atlantic'. (Ed. E. B. Böhlke.) pp. 961-972. (Allen Press: Lawrence, KS.)
46. Smith, D. G. (1995). Preservation of color in larval fishes. American Society Ichthyology and Herpetetology Curation Newsletter 11, 5-6.
47. Smith, P. J., Steinke, D., Stewart, A. L., Mcveagh, S. M., Stewart, A. L., Struthers, C. D., and Roberts, C. D. (2008). Molecular analysis of Southern Ocean skates (Bathyraja) reveals a new species of Antarctic skate. Journal of Fish Biology73, 1170-1182. doi:10.1111/J.1095-8649. 2008.01957.X
48. Sponaugle, S., Cowen, R. K., Shanks, A., Morgan, S. G., Leis, J. M., et al. (2002). Predicting self-recruitment in marine populations: biophysical correlates and mechanisms. Bulletin of Marine Science 70, 341-375. (Pubitemid 34696169)
49. Steinke, D., Zemlak, T. S., and Hebert, P. D. N. (2009). Barcoding Nemo: DNA-based identifications for the ornamental fish trade. PLoS ONE 4, e6300. doi:10.1371/JOURNAL.PONE.0006300
50. Teletchea, F. (2009). Molecular identification methods of fish species: reassessment and possible applications. Reviews in Fish Biology and Fisheries 19, 265-293. doi:10.1007/S11160-009-9107-4
51. Valdez-Moreno, M., Ivanova, N. V., Elías-Gutiérrez, M., Contreras-Balderas, S., and Hebert, P. D. N. (2009). Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. Journal of Fish Biology 74, 377-402. doi:10.1111/J.1095-8649.2008.02077.X
52. Vásquez-Yeomans, L., Sosa-Cordero, E., Lara, M., Adams, A., and Cohuo, J. A. (2009). Patterns of distribution and abundance of bonefish larvae Albula spp. (Albulidae) in the western Caribbean and adjacent areas. Ichthylogical Research 56, 266-275. doi:10.1007/S10228-009-0098-X
53. Victor, B. C. (2007). Coryphopterus kuna, a new goby (Perciformes: Gobiidae: Gobiinae) from the western Caribbean, with the identification of the late larval stage and an estimate of the pelagic larval duration. Zootaxa 1526, 51-61.
54. Victor, B. C. (2008). Redescription of Coryphopterus tortugae (Jordan) and a new allied species Coryphopterus bol (Perciformes: Gobiidae: Gobiinae) from the tropical western Atlantic Ocean. Journal of the Ocean Science Foundation 1, 1-19.
55. Victor, B. C., Hanner, R., Shivji, M., Hyde, J., and Caldow, C. (2009). Identification of the larval and juvenile stages of the cubera snapper, Lutjanus cyanopterus, using DNA barcoding. Zootaxa 2215, 24-36.
56. Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R., and Hebert, P. D. N. (2005). DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360, 1847-1857. doi:10.1098/RSTB.2005.1716 (Pubitemid 44365045)
57. Ward, R. D., Costa, F. O., Holmes, B. H., and Steinke, D. (2008a). DNA barcoding of shared fish species from the North Atlantic and Australasia: minimal divergence for most taxa, but Zeus faber and Lepidopus caudatus each probably constitute two species. Aquatic Biology 3, 71-78. doi:10.3354/AB00068
58. Ward, R. D., Holmes, B. H., White, W. T., and Last, P. R. (2008b). DNA barcoding Australasian chondrichthyans: results and potential uses in conservation. Marine and Freshwater Research 59, 57-71. doi:10.1071/ MF07148 (Pubitemid 351170398)
59. Ward, R. D., Hanner, R., and Hebert, P. D. N. (2009). The campaign to DNA barcode all fishes, FISH-BOL. Journal of Fish Biology 74, 329-356. doi:10.1111/J.1095-8649.2008.02080.X
60. Webb,K.E., Barnes,D.K. A., Clark, M. S., and Bowden, D.A. (2006).DNA barcoding: a molecular tool to identify Antarctic marine larvae. Deep-Sea Research. Part II, Topical Studies in Oceanography 53, 1053-1060. doi:10.1016/J.DSR2.2006.02.013 (Pubitemid 44163812)
61. Wong, E. H. K., and Hanner, R. H. (2008). DNA barcoding detects market substitution in North American seafood. Food Research International 41, 828-837. doi:10.1016/J.FOODRES.2008.07.005
62. Zemlak, T. S., Ward, R. D., Connell, A. D., Holmes, B. H., and Hebert, P. D. N. (2009). DNA barcoding reveals overlooked marine fishes. Molecular Ecology Resources 9, 237-242. doi:10.1111/J.1755-0998. 2009.02649.X