Complete discrimination of six individuals based on high-resolution melting of hypervariable regions I and II of the mitochondrial genome

BioTechniques

Volumn 47, Issue 2, 2009, Pages 671-678

  Gidlöf, Olof ^a   Burvall, Sofia ^a   Edvinsson, Lars ^a   Montelius, Maria ^b   Allen, Marie ^b   Molin, Magnus ^a  

^a AlphaHelix Molecular Diagnostics AB   (Sweden)

^b UPPSALA UNIVERSITY   (Sweden)

Author keywords

Forensics; Genotyping; High resolution melting; HRM, Mitochondrial DNA; MtDNA

Indexed keywords

MITOCHONDRIAL DNA;

ACCURACY; ARTICLE; DNA DENATURATION; DNA SEQUENCE; DNA STRUCTURE; FORENSIC IDENTIFICATION; GENETIC VARIABILITY; HIGH RESOLUTION MELTING; HUMAN; HYPERVARIABLE REGION I; HYPERVARIABLE REGION II; MELTING POINT; MITOCHONDRIAL GENOME; SCREENING;

CHROMOSOME MAPPING; COMPLEMENTARITY DETERMINING REGIONS; DNA FINGERPRINTING; DNA, MITOCHONDRIAL; HUMANS; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; TRANSITION TEMPERATURE;

EID: 77954021033     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/000113197     Document Type: Article

References (21)

1. Reynolds, R., G. Sensabaugh, and E. Blake. 1991. Analysis of genetic markers in forensic DNA samples using the polymerase chain reaction. Anal. Chem. 63:2-15.
2. Szibor, R., M. Michael, I. Plate, and D. Krause. 2000. Efficiency of forensic mtDNA analysis. Case examples demonstrating the identification of traces. Forensic Sci. Int. 113:71-78.
3. Budowle, B., M.R. Wilson, J.A. DiZinno, C. Stauffer, M.A. Fasano, M.M. Holland, and K.L. Monson. 1999. Mitochondrial DNA regions HVI and HVII population data. Forensic Sci. Int. 103:23-35.
4. Al len, M., A. S. Engstrom, S. Meyers, O. Handt, T. Saldeen, A. von Haeseler, S. Paabo, and U. Gyllensten. 1998. Mitochondrial DNA sequencing of shed hairs and saliva on robbery caps: sensitivity and matching probabilities. J. Forensic Sci. 43:453-464.
5. Ye, J., E.J. Parra, D.M. Sosnoski, K. Hiester, P.A. Underhill, and M.D. Shriver. 2002. Melting curve SNP (McSNP) genotyping: a useful approach for diallelic genotyping in forensic science. J. Forensic Sci. 47:593-600.
6. Jiang, Y., T. Ellis, and A.R. Greenlee. 2004. Genotyping Parkinson disease-associated mitochondrial polymorphisms. Clin. Med. Res. 2:99-106.
7. Hall, T.A., B. Budowle, Y. Jiang, L. Blyn, M. Eshoo, K.A. Sannes-Lowery, R. Sampath, J.J. Drader, et al. 2005. Base composition analysis of human mitochondrial DNA using electrospray ionization mass spectrometry: a novel tool for the identification and differentiation of humans. Anal. Biochem. 344:53-69.
8. Reed, G.H. and C.T. Wittwer. 2004. Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin. Chem. 50:1748-1754.
9. Liew, M., R. Pryor, R. Palais, C. Meadows, M. Erali, E. Lyon, and C. Wittwer. 2004. Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin. Chem. 50:1156-1164.
10. Smith, G.D., B.E. Chadwick, C. Willmore-Payne, and J.S. Bentz. 2008. Detection of epidermal growth factor receptor gene mutations in cytology specimens from patients with non-small cell lung cancer utilising high-resolution melting amplicon analysis. J. Clin. Pathol. 61:487-493.
11. Wojdacz, T.K. and A. Dobrovic. 2007. Methylation-sensitive high resolution melting (MS-HRM): a new approach for sensitive and high-throughput assessment of methylation. Nucleic Acids Res. 35:e41.
12. Wittwer, C.T., G.H. Reed, C.N. Gundry, J.G. Vandersteen, and R.J. Pryor. 2003. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin. Chem. 49:853-860.
13. Dufresne, S.D., D.R. Belloni, W.A. Wells, and G.J. Tsongalis. 2006. BRCA1 and BRCA2 mutation screening using SmartCycler II high-resolution melt curve analysis. Arch. Pathol. Lab. Med. 130:185-187.
14. Pornprasert , S., A. Phusua, S. Suanta, R. Saetung, and T. Sanguansermsri. 2008. Detection of alpha-thalassemia-1 Southeast Asian type using real-time gap-PCR with SYBR Green1 and high resolution melting analysis. Eur. J. Haematol. 80:510-514.
15. Price, E.P., H. Smith, F. Huygens, and P.M. Giffard. 2007. High-resolution DNA melt curve analysis of the clustered, regularly interspaced short-palindromic-repeat locus of Campylobacter jejuni. Appl. Environ. Microbiol. 73:3431-3436.
16. Martensson, G., M. Skote, M. Malmqvist, M. Falk, A. Asp, N. Svanvik, and A. Johansson. 2006. Rapid PCR amplification of DNA utilizing Coriolis effects. Eur. Biophys. J. 35:453-458.
17. Andreasson, H., A. Asp, A. Alderborn, U. Gyllensten and M. Allen. 2002. Mitochondrial sequence analysis for forensic identification using pyrosequencing technology. BioTechniques 32:124-133.
18. Anderson, S., A.T. Bankier, B.G. Barrell, M.H. de Bruijn, A.R. Coulson, J. Drouin, I.C. Eperon, D.P. Nierlich, et al. 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
19. Herrmann, M.G., J.D. Durtschi, L.K. Bromley, C.T. Wittwer, and K.V. Voelkerding. 2006. Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes. Clin. Chem. 52:494-503.
20. Divne, A.M., M. Nilsson, C. Calloway, R. Reynolds, H. Erlich, and M. Allen. 2005. Forensic casework analysis using the HVI/HVII mtDNA linear array assay. J. Forensic Sci. 50:548-554.
21. Bar, W., B. Brinkmann, B. Budowle, A. Carracedo, P. Gill, M. Holland, P.J. Lincoln, W. Mayr, et al. 2000. Guidelines for mitochondrial DNA typing. DNA Commission of the International Society for Forensic Genetics. Vox Sang. 79:121-125.