-
4
-
-
0000866235
-
-
10.1021/ja01646a079
-
P. Doty, A. M. Holtzer, J. H. Bradbury, and E. R. Blout, J. Am. Chem. Soc. 76, 4493 (1954) 10.1021/ja01646a079
-
(1954)
J. Am. Chem. Soc.
, vol.76
, pp. 4493
-
-
Doty, P.1
Holtzer, A.M.2
Bradbury, J.H.3
Blout, E.R.4
-
7
-
-
0031127043
-
Development of the multiple sequence approximation within the AGADIR model of α-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
DOI 10.1002/(SICI)1097-0282(1997 0415)41:5<495::AID-BIP 2>3.0.CO;2-H
-
V. Muñoz and L. Serrano, Biopolymers 41, 495 (1997) 10.1002/(SICI)1097-0282(19970415)41:5<495::AID-BIP2>3.0.CO;2-H (Pubitemid 27161124)
-
(1997)
Biopolymers
, vol.41
, Issue.5
, pp. 495-509
-
-
Munoz, V.1
Serrano, L.2
-
8
-
-
0032556223
-
α-Helix nucleation constant in copolypeptides of alanine and ornithine or lysine
-
DOI 10.1021/ja982319d
-
J. Yang, JACS 120, 10646 (1998) 10.1021/ja982319d (Pubitemid 28498809)
-
(1998)
Journal of the American Chemical Society
, vol.120
, Issue.41
, pp. 10646-10652
-
-
Yang, J.1
Zhao, K.2
Gong, Y.3
Vologodskii, A.4
Kallenbach, N.R.5
-
10
-
-
18844361915
-
Helix-coil transition of alanine peptides in water: Force field dependence on the folded and unfolded structures
-
DOI 10.1002/prot.20439
-
S. Gnanakaran and A. E. Garcia, Proteins 59, 773 (2005) 10.1002/prot.20439 (Pubitemid 40695852)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.59
, Issue.4
, pp. 773-782
-
-
Gnanakaran, S.1
Garcia, A.E.2
-
11
-
-
24344500805
-
Exhaustive Metropolis Monte Carlo sampling and analysis of polyalanine conformations adopted under the influence of hydrogen bonds
-
DOI 10.1002/prot.20513
-
A. A. Podtelezhnikov and D. L. Wild, Proteins 61, 94 (2005) 10.1002/prot.20513 (Pubitemid 41262920)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.61
, Issue.1
, pp. 94-104
-
-
Podtelezhnikov, A.A.1
Wild, D.L.2
-
12
-
-
34548314208
-
The helix-coil transition revisited
-
DOI 10.1002/prot.21492
-
Y. Chen, Y. Zhou, and J. Ding, Proteins 69, 58 (2007). 10.1002/prot.21492 (Pubitemid 47339139)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.1
, pp. 58-68
-
-
Chen, Y.1
Zhou, Y.2
Ding, J.3
-
14
-
-
34147147538
-
Ising-like model for protein mechanical unfolding
-
DOI 10.1103/PhysRevLett.98.148102
-
A. Imparato, A. Pelizzola, and M. Zamparo, Phys. Rev. Lett. 98, 148102 (2007). 10.1103/PhysRevLett.98.148102 (Pubitemid 46557426)
-
(2007)
Physical Review Letters
, vol.98
, Issue.14
, pp. 148102
-
-
Imparato, A.1
Pelizzola, A.2
Zamparo, M.3
-
15
-
-
0037832291
-
Stretching DNA and RNA to probe their interactions with proteins
-
DOI 10.1016/S0959-440X(03)00067-8
-
J.-F. Allemand, D. Bensimon, and V. Croquette, Curr. Opin. Struct. Biol. 13, 266 (2003) 10.1016/S0959-440X(03)00067-8 (Pubitemid 36782452)
-
(2003)
Current Opinion in Structural Biology
, vol.13
, Issue.3
, pp. 266-274
-
-
Allemand, J.-F.1
Bensimon, D.2
Croquette, V.3
-
17
-
-
33750023464
-
Single DNA molecule stretching measures the activity of chemicals that target the HIV-1 nucleocapsid protein
-
DOI 10.1016/j.ab.2006.08.037, PII S0003269706006373
-
M. Cruceanu, Anal. Biochem. 358, 159 (2006). 10.1016/j.ab.2006.08.037 (Pubitemid 44573088)
-
(2006)
Analytical Biochemistry
, vol.358
, Issue.2
, pp. 159-170
-
-
Cruceanu, M.1
Stephen, A.G.2
Beuning, P.J.3
Gorelick, R.J.4
Fisher, R.J.5
Williams, M.C.6
-
18
-
-
0035146646
-
-
10.1016/S0006-3495(01)76067-5
-
I. Rouzina and V. A. Bloomfield, Biophys. J. 80, 882 (2001). 10.1016/S0006-3495(01)76067-5
-
(2001)
Biophys. J.
, vol.80
, pp. 882
-
-
Rouzina, I.1
Bloomfield, V.A.2
-
19
-
-
33847751486
-
How does the coupling of secondary and tertiary interactions control the folding of helical macromolecules?
-
DOI 10.1063/1.2428298
-
V. Varshney and G. A. Carri, J. Chem. Phys. 126, 044906 (2007) 10.1063/1.2428298 (Pubitemid 46372725)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.4
, pp. 044906
-
-
Varshney, V.1
Carri, G.A.2
-
24
-
-
0035913510
-
Mean first-passage time calculations for the coil-to-helix transition: The active helix ising model
-
DOI 10.1021/jp0104031
-
N. V. Buchete and J. E. Straub, J. Phys. Chem. B 105, 6684 (2001) 10.1021/jp0104031 (Pubitemid 35339039)
-
(2001)
Journal of Physical Chemistry B
, vol.105
, Issue.28
, pp. 6684-6697
-
-
Buchete, N.-V.1
Straub, J.E.2
-
25
-
-
0033135666
-
The legacies of Langmuir, Ising, and Pauling: Ligand binding and the helix-coil transition
-
DOI 10.1002/(SICI)1097-0282(19990 5)49:6<425::AID-B IP1>3.0.CO;2-3
-
H. A. Saroff and J. E. Kiefer, Biopolymers 49, 425 (1999) 10.1002/(SICI)1097-0282(199905)49:6<425::AID-BIP1>3.0.CO;2-3 (Pubitemid 29157355)
-
(1999)
Biopolymers
, vol.49
, Issue.6
, pp. 425-440
-
-
Saroff, H.A.1
Kiefer, J.E.2
-
27
-
-
0036470526
-
Investigating a link between all-atom model simulation and the Ising-based theory on the helix-coil transition: Equilibrium statistical mechanics
-
DOI 10.1063/1.1431580
-
M. Takano, K. Nagayama, and A. Suyama, J. Chem. Phys. 116, 2219 (2002). 10.1063/1.1431580 (Pubitemid 34159929)
-
(2002)
Journal of Chemical Physics
, vol.116
, Issue.5
, pp. 2219-2228
-
-
Takano, M.1
Nagayama, K.2
Suyama, A.3
-
28
-
-
0004291995
-
-
Wiley, New York
-
See any standard textbook on Statistical Physics. For instance K. Huang, Statistical Physics (Wiley, New York, 1963), Sec. 16.5.
-
(1963)
Statistical Physics
-
-
Huang, K.1
-
29
-
-
0025089222
-
-
10.1002/bip.360300313
-
N. Ananikyan, Sh. Hayryan, E. Mamasakhlisov, and V. Morozov, Biopolymers 30, 357 (1990) 10.1002/bip.360300313
-
(1990)
Biopolymers
, vol.30
, pp. 357
-
-
Ananikyan, N.1
Hayryan, Sh.2
Mamasakhlisov, E.3
Morozov, V.4
-
31
-
-
48549107967
-
-
10.1016/0375-9601(84)90072-0
-
R. E. Goldstein, Phys. Lett. 104A, 285 (1984). 10.1016/0375-9601(84) 90072-0
-
(1984)
Phys. Lett.
, vol.104
, pp. 285
-
-
Goldstein, R.E.1
-
33
-
-
36149023450
-
-
10.1103/PhysRev.87.404
-
C. N. Yang and T. D. Lee, Phys. Rev. 87, 404 (1952). 10.1103/PhysRev.87. 404
-
(1952)
Phys. Rev.
, vol.87
, pp. 404
-
-
Yang, C.N.1
Lee, T.D.2
-
34
-
-
0002280069
-
-
University of Colorado Press, Boulder
-
M. E. Fisher, in Lectures in Theoretical Physics (University of Colorado Press, Boulder, 1965), Vol. 7c, p. 1.
-
(1965)
Lectures in Theoretical Physics
, vol.7 C
, pp. 1
-
-
Fisher, M.E.1
-
37
-
-
47649120904
-
-
10.1016/j.physa.2008.05.020
-
In the process of writing this paper, we became aware of a recent study N. Ananikian, L. Ananikian, R. Artuso, and K. Sargsyan, Physica A 387, 5433 (2008), devoted to the analysis of Fisher zeroes for the model with three-particle interactions (which is exactly a Lifson-Roig model, see Ref.) and our results in Fig. are quite similar to their Fig. 3. 10.1016/j.physa.2008.05. 020
-
(2008)
Physica A
, vol.387
, pp. 5433
-
-
Ananikian, N.1
Ananikian, L.2
Artuso, R.3
Sargsyan, K.4
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