-
1
-
-
0037133942
-
Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions
-
Kiss T. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 2002, 109:145-148.
-
(2002)
Cell
, vol.109
, pp. 145-148
-
-
Kiss, T.1
-
2
-
-
0036591884
-
Biogenesis of small nucleolar ribonucleoproteins
-
Filipowicz W., Pogacic V. Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol. 2002, 14:319-327.
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, pp. 319-327
-
-
Filipowicz, W.1
Pogacic, V.2
-
3
-
-
34247130376
-
The structure and function of small nucleolar ribonucleoproteins
-
Reichow S.L., Hamma T., Ferre-D'Amare A.R., Varani G. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res. 2007, 35:1452-1464.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1452-1464
-
-
Reichow, S.L.1
Hamma, T.2
Ferre-D'Amare, A.R.3
Varani, G.4
-
4
-
-
77953809274
-
Article sample title placed here
-
Clouet Test B. article sample title placed here. Nucleic Acids Res. 2001, 29:4518-4529.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4518-4529
-
-
Clouet Test, B.1
-
5
-
-
33646922629
-
Evolution of small nucleolar RNAs in nematodes
-
Zemann A., op de Bekke A., Kiefmann M., Brosius J., Schmitz J. Evolution of small nucleolar RNAs in nematodes. Nucleic Acids Res. 2006, 34:2676-2685.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2676-2685
-
-
Zemann, A.1
op de Bekke, A.2
Kiefmann, M.3
Brosius, J.4
Schmitz, J.5
-
6
-
-
30844442607
-
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
-
Kishore S., Stamm S. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 2006, 311:230-232.
-
(2006)
Science
, vol.311
, pp. 230-232
-
-
Kishore, S.1
Stamm, S.2
-
7
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
Ender C., et al. A human snoRNA with microRNA-like functions. Mol. Cell. 2008, 32:519-528.
-
(2008)
Mol. Cell.
, vol.32
, pp. 519-528
-
-
Ender, C.1
-
8
-
-
57149094023
-
SnoRNA, a novel precursor of microRNA in Giardia lamblia
-
Saraiya A.A., Wang C.C. snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog. 2008, 4:e1000224.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Saraiya, A.A.1
Wang, C.C.2
-
10
-
-
67649933366
-
Eukaryotic snoRNAs: a paradigm for gene expression flexibility
-
Dieci G., Preti M., Montanini B. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Genomics 2009, 94:83-88.
-
(2009)
Genomics
, vol.94
, pp. 83-88
-
-
Dieci, G.1
Preti, M.2
Montanini, B.3
-
11
-
-
34249090725
-
Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny
-
Tanaka-Fujita R., Soeno Y., Satoh H., Nakamura Y., Mori S. Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny. RNA 2007, 13:811-816.
-
(2007)
RNA
, vol.13
, pp. 811-816
-
-
Tanaka-Fujita, R.1
Soeno, Y.2
Satoh, H.3
Nakamura, Y.4
Mori, S.5
-
12
-
-
0027284266
-
A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3
-
Tycowski K.T., Shu M.D., Steitz J.A. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. Genes Dev. 1993, 7:1176-1190.
-
(1993)
Genes Dev.
, vol.7
, pp. 1176-1190
-
-
Tycowski, K.T.1
Shu, M.D.2
Steitz, J.A.3
-
13
-
-
0027171750
-
Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1
-
Kiss T., Filipowicz W. Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1. EMBO J. 1993, 12:2913-2920.
-
(1993)
EMBO J.
, vol.12
, pp. 2913-2920
-
-
Kiss, T.1
Filipowicz, W.2
-
14
-
-
0029068460
-
Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns
-
Kiss T., Filipowicz W. Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns. Genes Dev. 1995, 9:1411-1424.
-
(1995)
Genes Dev.
, vol.9
, pp. 1411-1424
-
-
Kiss, T.1
Filipowicz, W.2
-
15
-
-
33645296102
-
Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner
-
Richard P., Kiss A.M., Darzacq X., Kiss T. Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner. Mol. Cell. Biol. 2006, 26:2540-2549.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 2540-2549
-
-
Richard, P.1
Kiss, A.M.2
Darzacq, X.3
Kiss, T.4
-
16
-
-
0027170544
-
A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA
-
Fragapane P., Prislei S., Michienzi A., Caffarelli E., Bozzoni I. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. EMBO J. 1993, 12:2921-2928.
-
(1993)
EMBO J.
, vol.12
, pp. 2921-2928
-
-
Fragapane, P.1
Prislei, S.2
Michienzi, A.3
Caffarelli, E.4
Bozzoni, I.5
-
17
-
-
0029919357
-
Processing of the intron-encoded U16 and U18 snoRNAs: the conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA
-
Caffarelli E., et al. Processing of the intron-encoded U16 and U18 snoRNAs: the conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA. EMBO J. 1996, 15:1121-1131.
-
(1996)
EMBO J.
, vol.15
, pp. 1121-1131
-
-
Caffarelli, E.1
-
18
-
-
0030749116
-
Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs
-
Leader D.J., et al. Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs. EMBO J. 1997, 16:5742-5751.
-
(1997)
EMBO J.
, vol.16
, pp. 5742-5751
-
-
Leader, D.J.1
-
19
-
-
0033121158
-
Splicing-independent processing of plant box C/D and box H/ACA small nucleolar RNAs
-
Leader D.J., et al. Splicing-independent processing of plant box C/D and box H/ACA small nucleolar RNAs. Plant Mol. Biol. 1999, 39:1091-1100.
-
(1999)
Plant Mol. Biol.
, vol.39
, pp. 1091-1100
-
-
Leader, D.J.1
-
20
-
-
0035818553
-
Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells
-
Hirose T., Steitz J.A. Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells. Proc. Natl. Acad. Sci. U S A 2001, 98:12914-12919.
-
(2001)
Proc. Natl. Acad. Sci. U S A
, vol.98
, pp. 12914-12919
-
-
Hirose, T.1
Steitz, J.A.2
-
21
-
-
0043172414
-
Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells
-
Hirose T., Shu M.D., Steitz J.A. Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells. Mol. Cell. 2003, 12:113-123.
-
(2003)
Mol. Cell.
, vol.12
, pp. 113-123
-
-
Hirose, T.1
Shu, M.D.2
Steitz, J.A.3
-
22
-
-
33748169778
-
A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing
-
Hirose T., et al. A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing. Mol. Cell. 2006, 23:673-684.
-
(2006)
Mol. Cell.
, vol.23
, pp. 673-684
-
-
Hirose, T.1
-
23
-
-
33845899117
-
The position of yeast snoRNA-coding regions within host introns is essential for their biosynthesis and for efficient splicing of the host pre-mRNA
-
Vincenti S., De Chiara V., Bozzoni I., Presutti C. The position of yeast snoRNA-coding regions within host introns is essential for their biosynthesis and for efficient splicing of the host pre-mRNA. RNA 2007, 13:138-150.
-
(2007)
RNA
, vol.13
, pp. 138-150
-
-
Vincenti, S.1
De Chiara, V.2
Bozzoni, I.3
Presutti, C.4
-
24
-
-
30044435097
-
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression
-
Deng W., et al. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res. 2006, 16:20-29.
-
(2006)
Genome Res.
, vol.16
, pp. 20-29
-
-
Deng, W.1
-
25
-
-
9244225692
-
Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa
-
Tycowski K.T., Aab A., Steitz J.A. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. Curr. Biol. 2004, 14:1985-1995.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1985-1995
-
-
Tycowski, K.T.1
Aab, A.2
Steitz, J.A.3
-
26
-
-
52549086983
-
U3 snoRNA promoter reflects the RNA's function in ribosome biogenesis
-
Nabavi S., Nazar R.N. U3 snoRNA promoter reflects the RNA's function in ribosome biogenesis. Curr. Genet. 2008, 54:175-184.
-
(2008)
Curr. Genet.
, vol.54
, pp. 175-184
-
-
Nabavi, S.1
Nazar, R.N.2
-
27
-
-
36549073601
-
The expanding RNA polymerase III transcriptome
-
Dieci G., Fiorino G., Castelnuovo M., Teichmann M., Pagano A. The expanding RNA polymerase III transcriptome. Trends Genet. 2007, 23:614-622.
-
(2007)
Trends Genet.
, vol.23
, pp. 614-622
-
-
Dieci, G.1
Fiorino, G.2
Castelnuovo, M.3
Teichmann, M.4
Pagano, A.5
-
28
-
-
43149102067
-
Transcriptional regulation of human small nuclear RNA genes
-
Jawdekar G.W., Henry R.W. Transcriptional regulation of human small nuclear RNA genes. Biochim. Biophys. Acta 2008, 1779:295-305.
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 295-305
-
-
Jawdekar, G.W.1
Henry, R.W.2
-
29
-
-
33747643514
-
A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III
-
Guffanti E., et al. A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III. J. Biol. Chem. 2006, 281:23945-23957.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 23945-23957
-
-
Guffanti, E.1
-
30
-
-
0032906632
-
Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast
-
Qu L.H., et al. Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast. Mol. Cell. Biol. 1999, 19:1144-1158.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1144-1158
-
-
Qu, L.H.1
-
31
-
-
0034687740
-
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization
-
Cavaille J., et al. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl. Acad. Sci. U S A 2000, 97:14311-14316.
-
(2000)
Proc. Natl. Acad. Sci. U S A
, vol.97
, pp. 14311-14316
-
-
Cavaille, J.1
-
32
-
-
71049154451
-
Systematic identification and characterization of chicken (Gallus gallus) ncRNAs
-
Zhang Y., et al. Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Res. 2009.
-
(2009)
Nucleic Acids Res.
-
-
Zhang, Y.1
-
33
-
-
59949103192
-
High-resolution human core-promoter prediction with CoreBoost_HM
-
Wang X., Xuan Z., Zhao X., Li Y., Zhang M.Q. High-resolution human core-promoter prediction with CoreBoost_HM. Genome Res. 2009, 19:266-275.
-
(2009)
Genome Res.
, vol.19
, pp. 266-275
-
-
Wang, X.1
Xuan, Z.2
Zhao, X.3
Li, Y.4
Zhang, M.Q.5
-
34
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A., et al. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
-
35
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
Carninci P., et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. 2006, 38:626-635.
-
(2006)
Nat. Genet.
, vol.38
, pp. 626-635
-
-
Carninci, P.1
-
36
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle A.P., et al. High-resolution mapping and characterization of open chromatin across the genome. Cell 2008, 132:311-322.
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
-
38
-
-
33846012547
-
Mammalian small nucleolar RNAs are mobile genetic elements
-
Weber M.J. Mammalian small nucleolar RNAs are mobile genetic elements. PLoS Genet. 2006, 2:e205.
-
(2006)
PLoS Genet.
, vol.2
-
-
Weber, M.J.1
-
39
-
-
58149178565
-
The UCSC Genome Browser Database: update 2009
-
Kuhn R.M., et al. The UCSC Genome Browser Database: update 2009. Nucleic Acids Res. 2009, 37:D755-D761.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Kuhn, R.M.1
-
40
-
-
8344288229
-
Promoter prediction analysis on the whole human genome
-
Bajic V.B., Tan S.L., Suzuki Y., Sugano S. Promoter prediction analysis on the whole human genome. Nat. Biotechnol. 2004, 22:1467-1473.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1467-1473
-
-
Bajic, V.B.1
Tan, S.L.2
Suzuki, Y.3
Sugano, S.4
-
41
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y., et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008, 9:R137.
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, Y.1
-
42
-
-
0035735265
-
Computational identification of promoters and first exons in the human genome
-
Davuluri R.V., Grosse I., Zhang M.Q. Computational identification of promoters and first exons in the human genome. Nat. Genet. 2001, 29:412-417.
-
(2001)
Nat. Genet.
, vol.29
, pp. 412-417
-
-
Davuluri, R.V.1
Grosse, I.2
Zhang, M.Q.3
-
43
-
-
0036166744
-
Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters
-
Bajic V.B., et al. Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. Bioinformatics 2002, 18:198-199.
-
(2002)
Bioinformatics
, vol.18
, pp. 198-199
-
-
Bajic, V.B.1
-
44
-
-
31944432339
-
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
-
Saxonov S., Berg P., Brutlag D.L. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc. Natl. Acad. Sci. U S A 2006, 103:1412-1417.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 1412-1417
-
-
Saxonov, S.1
Berg, P.2
Brutlag, D.L.3
-
45
-
-
33750488431
-
The genomic landscape of histone modifications in human T cells
-
Roh T.Y., Cuddapah S., Cui K., Zhao K. The genomic landscape of histone modifications in human T cells. Proc. Natl. Acad. Sci. U S A 2006, 103:15782-15787.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 15782-15787
-
-
Roh, T.Y.1
Cuddapah, S.2
Cui, K.3
Zhao, K.4
-
46
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
47
-
-
29644442757
-
Genome-wide promoter extraction and analysis in human, mouse, and rat
-
Xuan Z., Zhao F., Wang J., Chen G., Zhang M.Q. Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome Biol. 2005, 6:R72.
-
(2005)
Genome Biol.
, vol.6
-
-
Xuan, Z.1
Zhao, F.2
Wang, J.3
Chen, G.4
Zhang, M.Q.5
-
48
-
-
0037208166
-
TRANSFAC: transcriptional regulation, from patterns to profiles
-
Matys V., et al. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 2003, 31:374-378.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 374-378
-
-
Matys, V.1
-
49
-
-
33646580422
-
DNA motifs in human and mouse proximal promoters predict tissue-specific expression
-
Smith A.D., Sumazin P., Xuan Z., Zhang M.Q. DNA motifs in human and mouse proximal promoters predict tissue-specific expression. Proc. Natl. Acad. Sci. U S A 2006, 103:6275-6280.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 6275-6280
-
-
Smith, A.D.1
Sumazin, P.2
Xuan, Z.3
Zhang, M.Q.4
-
50
-
-
22344457014
-
EnoLOGOS: a versatile web tool for energy normalized sequence logos
-
Workman C.T., et al. enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Res. 2005, 33:W389-W392.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Workman, C.T.1
|