The functional organization of the internal components of Rice dwarf virus

Journal of Biochemistry

Volumn 147, Issue 6, 2010, Pages 843-850

  Miyazaki, Naoyuki ^a,b,c,d   Wu, Bomu ^b   Hagiwara, Kyoji ^c   Wang, Che Yen ^a   Xing, Li ^a   Hammar, Lena ^b   Higashiura, Akifumi ^d   Tsukihara, Tomitake ^d   Nakagawa, Atsushi ^d   Omura, Toshihiro ^c   Cheng, R Holland ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b KAROLINSKA INSTITUTE   (Sweden)

^c NATIONAL AGRICULTURAL RESEARCH CENTER   (Japan)

^d OSAKA UNIVERSITY   (Japan)

Author keywords

electron microscopy; genome organization; Phytoreovirus; Rice dwarf virus; transcription

Indexed keywords

CAPSID PROTEIN; DOUBLE STRANDED RNA; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; CRYOELECTRON MICROSCOPY; NONHUMAN; PROTEIN ANALYSIS; PROTEIN STRUCTURE; RICE DWARF VIRUS; VIRUS; VIRUS CAPSID; VIRUS LIKE AGENT;

BACULOVIRIDAE; CRYOELECTRON MICROSCOPY; MODELS, MOLECULAR; ORYZA SATIVA; REOVIRIDAE; RNA, DOUBLE-STRANDED; RNA, VIRAL; RNA-BINDING PROTEINS; VIRAL STRUCTURAL PROTEINS; VIRUS ASSEMBLY;

MIRIDAE; PHYTOREOVIRUS; RICE DWARF VIRUS;

EID: 77953725201     PISSN: 0021924X     EISSN: 17562651     Source Type: Journal    
DOI: 10.1093/jb/mvq017     Document Type: Article

References (31)

1. Omura, T., and Yan, J. (1999) Role of outer capsid proteins in transmission of Phytoreovirus by insect vectors. Adv. Virus Res. 54, 15-43
2. Zhong, B.X., Shen, Y.W., and Omura, T. (2005) RNA-binding domain of the key structural protein P7 for the Rice dwarf virus particle assembly. Acta Biochim. Biophys. Sin 37, 55-60
3. Miyazaki, N., Hagiwara, K., Naitow, H., Higashi, T., Cheng, R.H., Tsukihara, T., Nakagawa, A., and Omura, T. (2005) Transcapsidation and the conserved interactions of two major structural proteins of a pair of phytoreoviruses confirm the mechanism of assembly of the outer capsid layer. J. Mol. Biol. 345, 229-237
4. Nakagawa, A., Miyazaki, N., Taka, J., Naitow, H., Ogawa, A., Fujimoto, Z., Mizuno, H., Higashi, T., Watanabe, Y., Omura, T., Cheng, R.H., and Tsukihara, T. (2003) The atomic structure of Rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure 11, 1227-1238
5. Zhong, B., Kikuchi, A., Moriyasu, Y., Higashi, T., Hagiwara, K., and Omura, T. (2003) A minor outer capsid protein, P9, of Rice dwarf virus. Arch. Virol. 148, 2275-2280
6. Hill, C.L., Booth, T.F., Prasad, B.V., Grimes, J.M., Mertens, P.P., Sutton, G.C., and Stuart, D.I. (1999) The structure of a cypovirus and the functional organization of dsRNA viruses. Nat. Struct. Biol. 6, 565-568
7. Grimes, J.M., Burroughs, J.N., Gouet, P., Diprose, M., Malby, R., Zientara, S., Mertens, P.P., and Stuart, D.I. (1998) The atomic structure of the bluetongue virus core. Nature 395, 470-478
8. Prasad, B.V.V., Rothnagel, R., Zeng, C.Q.-Y., Jakana, J., Lawton, J.A., Chiu, W., and Estes, M.K. (1996) Visualization of ordered genomic RNA and localization of transcriptional complexes in rotavirus. Nature 382, 471-473
9. Reinisch, K.M., Nibert, M.N., and Harrison, S.C. (2000) Structure of the reovirus core at 3.6Å resolution. Nature 404, 960-967
10. Xia, Q., Jakana, J., Zhang, J.Q., and Zhou, Z.H. (2003) Structural comparisons of empty and full cytoplasmic polyhedrosis virus. Protein-RNA interactions and implications for endogenous RNA transcription mechanism. J. Biol. Chem. 278, 1094-1100
11. Miyazaki, N., Uehara-Ichiki, T., Xing, L., Bergman, L., Higashiura, A., Nakagawa, A., Omura, T., and Cheng, R.H. (2008) Structural evolution of reoviridae revealed by oryzavirus in acquiring the second capsid shell. J. Virol. 82, 11344-11353
12. Zhang, X., Walker, S.B., Chipman, P.R., Nibert, M.L., and Baker, T.S. (2003) Reovirus polymerase -3 localized by cryo-electron microscopy of virions at a resolution of 7.6Å . Nat. Struct. Biol. 10, 1011-1018
13. Kimura, I., Minobe, Y., and Omura, T. (1987) Changes in a nucleic acid and a protein component of Rice dwarf virus particle associated with an increase in symptom severity. J. Gen. Virol. 68, 3211-3215
14. Omura, T., Yan, J., Zhong, B., Wada, M., Zhu, Y., Tomaru, M., Maruyama, W., Kikuchi, A., Watanabe, Y., Kimura, I., and Hibino, H. (1998) The P2 protein of Rice dwarf phytoreovirus is required for adsorption of the virus to cells of the insect vector. J. Virol. 72, 9370-9373
15. Hagiwara, K., Higashi, T., Namba, K., Uehara-Ichiki, T., and Omura, T. (2003) Assembly of single-shelled cores and double-shelled virus-like particles after baculovirus expression of major structural proteins P3, P7 and P8 of Rice dwarf virus. J. Gen. Virol. 84, 981-984
16. Cheng, R.H., Reddy, V.S., Olson, N.H., Fisher, A.J., Baker, T.S., and Johnson, J.E. (1994) Functional implications of quasi-equivalence in a T=3 icosahedral animal virus established by cryo-electron microscopy and X-ray crystallography. Structure 2, 271-282
17. Baker, T.S., and Cheng, R.H. (1996) A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy. J. Struct. Biol. 116, 120-130
18. Wu, B., Hammar, L., Xing, L., Markarian, S., Yan, J., Iwasaki, K., Fujiyoshi, Y., Omura, T., and Cheng, R.H. (2000) Phytoreovirus T=1 core plays critical roles in organizing the outer capsid of T=13 quasi-equivalence. Virology 271, 18-25
19. Jones, T.A., Zou, J.-Y., Cowan, S.W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119
20. Kantardjieff, K.A., and Rupp, B. (2003) Matthews coefficient probabilities: iImproved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals. Protein Sci. 12, 1865-1871
21. Ueda, S., Masuta, C., and Uyeda, I. (1997) Hypothesis on particle structure and assembly of rice dwarf phytoreovirus: interactions among multiple structural proteins. J. Gen. Virol. 78, 3135-3140
22. Zhong, B., Roth, D.A., Zhu, Y., and Omura, T. (2004) An assembly model of Rice dwarf virus particle. Science China Ser. Life Sci. 47, 92-100
23. Gouet, P., Diprose, J.M., Grimes, J.M., Malby, R., Burroughs, J.N., Zientara, S., Stuart, D.I., and Mertens, P.P.C. (1999) The highly ordered doublestranded RNA genome of bluetongue virus revealed by crystallography. Cell 97, 481-490
24. Nason, E.L., Rothagel, R., Mukherjee, S.K., Kar, A.K., Forzan, M., Prasad, B.V., and Roy, P. (2004) Interactions between the inner and outer capsids of bluetongue virus. J. Virol. 78, 8059-8067
25. Lowton, J.A., Estes, M.K., and Prasad, B.V. (1997) Three-dimensional visualization of mRNA release from actively transcribing rotavirus particles. Nat. Struct. Biol. 4, 118-121
26. Lowton, J.A., Estes, M.K., and Prasad, B.V. (2000) Mechanism of genome transcription in segmented dsRNA viruses. Adv. Virus Res. 55, 185-229
27. Livolant, F., and Leforestier, A. (1996) Condensed phases of DNA: structures and phase transitions. Prog. Polym. Sci. 21, 1115-1164
28. Pesavento, J.B., Lawton, J.A., Estes, M.K., and Prasad, B.V.V. (2001) The reversible condensation and expansion of the rotavirus genome. Proc. Natl Acad. Sci. USA 98, 1381-1386
29. Zhong, B., Roth, D.A., Zhu, Y., and Omura, T. (2004) An assembly model of Rice dwarf virus particle. Sci. China Ser. C 47, 92-100
30. Hagiwara, K., Higashi, T., Miyazaki, N., Naitow, H., Cheng, R.H., Nakagawa, A., Mizuno, H., Tsukihara, T., and Omura, T. (2004) The amino-terminal region of major capsid protein P3 is essential for self-assembly of single-shelled core-like particles of Rice dwarf virus. J. Virol. 78, 3145-3148
31. Naitow, H., Morimoto, Y., Mizuno, H., Kano, H., Omura, T., Koizumi, M., and Tsukihara, T. (1999) A low-resolution structure of rice dwarf virus determined by ab initio phasing. Acta Crystallogr. D 55, 77-84