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Volumn 21, Issue 6, 2010, Pages 1115-1120

Double displacement: An improved bioorthogonal reaction strategy for templated nucleic acid detection

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; FLUORESCENCE QUENCHING; NUCLEOPHILES; RNA; SUBSTITUTION REACTIONS;

EID: 77953647250     PISSN: 10431802     EISSN: 15204812     Source Type: Journal    
DOI: 10.1021/bc100165h     Document Type: Article
Times cited : (13)

References (42)
  • 1
    • 0027154131 scopus 로고
    • Template controlled coupling and recombination of oligonucleotide blocks containing thiophosphoryl groups
    • Gryaznov, S. M. and Letsinger, R. L. (1993) Template controlled coupling and recombination of oligonucleotide blocks containing thiophosphoryl groups Nucleic Acids Res. 21, 1403-8
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1403-1408
    • Gryaznov, S.M.1    Letsinger, R.L.2
  • 2
    • 0028362688 scopus 로고
    • Enhancement of selectivity in recognition of nucleic acids via chemical autoligation
    • Gryaznov, S. M., Schultz, R., Chaturvedi, S. K., and Letsinger, R. L. (1994) Enhancement of selectivity in recognition of nucleic acids via chemical autoligation Nucleic Acids Res. 22, 2366-9
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2366-2369
    • Gryaznov, S.M.1    Schultz, R.2    Chaturvedi, S.K.3    Letsinger, R.L.4
  • 3
    • 0028568952 scopus 로고
    • Selective chemical autoligation on a double-stranded DNA template
    • Herrlein, M. K. and Letsinger, R. L. (1994) Selective chemical autoligation on a double-stranded DNA template Nucleic Acids Res. 22, 5076-8
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5076-5078
    • Herrlein, M.K.1    Letsinger, R.L.2
  • 4
    • 51049102624 scopus 로고    scopus 로고
    • Model systems for activation of nucleic acid encoded prodrugs
    • Jacobsen, M. F., Clo, E., Mokhir, A., and Gothelf, K. V. (2007) Model systems for activation of nucleic acid encoded prodrugs ChemMedChem 2, 793-9
    • (2007) ChemMedChem , vol.2 , pp. 793-799
    • Jacobsen, M.F.1    Clo, E.2    Mokhir, A.3    Gothelf, K.V.4
  • 5
    • 73949155787 scopus 로고    scopus 로고
    • A nucleic acid dependent chemical photocatalysis in live human cells
    • Arian, D., Clo, E., Gothelf, K. V., and Mokhir, A. A nucleic acid dependent chemical photocatalysis in live human cells Chemistry 16, 288-95
    • Chemistry , vol.16 , pp. 288-295
    • Arian, D.1    Clo, E.2    Gothelf, K.V.3    Mokhir, A.4
  • 6
    • 0037019530 scopus 로고    scopus 로고
    • Multistep small-molecule synthesis programmed by DNA templates
    • Gartner, Z. J., Kanan, M. W., and Liu, D. R. (2002) Multistep small-molecule synthesis programmed by DNA templates J. Am. Chem. Soc. 124, 10304-6
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 10304-10306
    • Gartner, Z.J.1    Kanan, M.W.2    Liu, D.R.3
  • 7
    • 4644350506 scopus 로고    scopus 로고
    • DNA-templated organic synthesis and selection of a library of macrocycles
    • Gartner, Z. J., Tse, B. N., Grubina, R., Doyon, J. B., Snyder, T. M., and Liu, D. R. (2004) DNA-templated organic synthesis and selection of a library of macrocycles Science 305, 1601-5
    • (2004) Science , vol.305 , pp. 1601-1605
    • Gartner, Z.J.1    Tse, B.N.2    Grubina, R.3    Doyon, J.B.4    Snyder, T.M.5    Liu, D.R.6
  • 8
    • 19344371309 scopus 로고    scopus 로고
    • Translating DNA into synthetic molecules
    • Liu, D. R. (2004) Translating DNA into synthetic molecules PLoS Biol. 2 E223
    • (2004) PLoS Biol. , vol.2
    • Liu, D.R.1
  • 9
    • 28044437353 scopus 로고    scopus 로고
    • Ordered multistep synthesis in a single solution directed by DNA templates
    • Snyder, T. M. and Liu, D. R. (2005) Ordered multistep synthesis in a single solution directed by DNA templates Angew. Chem., Int. Ed. Engl. 44, 7379-82
    • (2005) Angew. Chem., Int. Ed. Engl. , vol.44 , pp. 7379-7382
    • Snyder, T.M.1    Liu, D.R.2
  • 10
    • 75349085231 scopus 로고    scopus 로고
    • An in vitro translation, selection and amplification system for peptide nucleic acids
    • Brudno, Y., Birnbaum, M. E., Kleiner, R. E., and Liu, D. R. An in vitro translation, selection and amplification system for peptide nucleic acids Nat. Chem. Biol. 6, 148-55
    • Nat. Chem. Biol. , vol.6 , pp. 148-155
    • Brudno, Y.1    Birnbaum, M.E.2    Kleiner, R.E.3    Liu, D.R.4
  • 11
    • 33750008390 scopus 로고    scopus 로고
    • Detecting RNA and DNA with templated chemical reactions
    • Silverman, A. P. and Kool, E. T. (2006) Detecting RNA and DNA with templated chemical reactions Chem. Rev. 106, 3775-89
    • (2006) Chem. Rev. , vol.106 , pp. 3775-3789
    • Silverman, A.P.1    Kool, E.T.2
  • 12
    • 2942590260 scopus 로고    scopus 로고
    • Establishment of a real-time PCR-based approach for accurate quantification of bacterial RNA targets in water, using Salmonella as a model organism
    • Fey, A., Eichler, S., Flavier, S., Christen, R., Hofle, M. G., and Guzman, C. A. (2004) Establishment of a real-time PCR-based approach for accurate quantification of bacterial RNA targets in water, using Salmonella as a model organism Appl. Environ. Microbiol. 70, 3618-23
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3618-3623
    • Fey, A.1    Eichler, S.2    Flavier, S.3    Christen, R.4    Hofle, M.G.5    Guzman, C.A.6
  • 14
    • 0035370087 scopus 로고    scopus 로고
    • The identification of microorganisms by fluorescence in situ hybridisation
    • Amann, R., Fuchs, B. M., and Behrens, S. (2001) The identification of microorganisms by fluorescence in situ hybridisation Curr. Opin. Biotechnol. 12, 231-6
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 15
    • 31044444366 scopus 로고    scopus 로고
    • Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes
    • Abe, H. and Kool, E. T. (2006) Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes Proc. Natl. Acad. Sci. U.S.A. 103, 263-8
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 263-268
    • Abe, H.1    Kool, E.T.2
  • 16
    • 3843054927 scopus 로고    scopus 로고
    • Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells
    • Nitin, N., Santangelo, P. J., Kim, G., Nie, S., and Bao, G. (2004) Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells Nucleic Acids Res. 32 e58
    • (2004) Nucleic Acids Res. , vol.32
    • Nitin, N.1    Santangelo, P.J.2    Kim, G.3    Nie, S.4    Bao, G.5
  • 17
    • 32944464429 scopus 로고    scopus 로고
    • Direct visualization of mRNA colocalization with mitochondria in living cells using molecular beacons
    • Santangelo, P. J., Nitin, N., and Bao, G. (2005) Direct visualization of mRNA colocalization with mitochondria in living cells using molecular beacons J. Biomed. Opt. 10, 44025
    • (2005) J. Biomed. Opt. , vol.10 , pp. 44025
    • Santangelo, P.J.1    Nitin, N.2    Bao, G.3
  • 18
    • 3843132105 scopus 로고    scopus 로고
    • Dual FRET molecular beacons for mRNA detection in living cells
    • Santangelo, P. J., Nix, B., Tsourkas, A., and Bao, G. (2004) Dual FRET molecular beacons for mRNA detection in living cells Nucleic Acids Res. 32 e57
    • (2004) Nucleic Acids Res. , vol.32
    • Santangelo, P.J.1    Nix, B.2    Tsourkas, A.3    Bao, G.4
  • 19
    • 56749169576 scopus 로고    scopus 로고
    • NLS peptide conjugated molecular beacons for visualizing nuclear RNA in living cells
    • Nitin, N. and Bao, G. (2008) NLS peptide conjugated molecular beacons for visualizing nuclear RNA in living cells Bioconjugate Chem. 19, 2205-11
    • (2008) Bioconjugate Chem. , vol.19 , pp. 2205-2211
    • Nitin, N.1    Bao, G.2
  • 21
    • 11444263726 scopus 로고    scopus 로고
    • Nucleic acid-triggered fluorescent probe activation by the Staudinger reaction
    • Cai, J., Li, X., Yue, X., and Taylor, J. S. (2004) Nucleic acid-triggered fluorescent probe activation by the Staudinger reaction J. Am. Chem. Soc. 126, 16324-5
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 16324-16325
    • Cai, J.1    Li, X.2    Yue, X.3    Taylor, J.S.4
  • 22
    • 34548783310 scopus 로고    scopus 로고
    • Fluorescence-based detection of single nucleotide permutation in DNA via catalytically templated reaction
    • Pianowski, Z. L. and Winssinger, N. (2007) Fluorescence-based detection of single nucleotide permutation in DNA via catalytically templated reaction Chem. Commun. (Camb.) 3820-2
    • (2007) Chem. Commun. (Camb.) , pp. 3820-3822
    • Pianowski, Z.L.1    Winssinger, N.2
  • 24
    • 59649103892 scopus 로고    scopus 로고
    • 7-Azidomethoxy-coumarins as profluorophores for templated nucleic acid detection
    • Franzini, R. M. and Kool, E. T. (2008) 7-Azidomethoxy-coumarins as profluorophores for templated nucleic acid detection ChemBioChem 9, 2981-8
    • (2008) ChemBioChem , vol.9 , pp. 2981-2988
    • Franzini, R.M.1    Kool, E.T.2
  • 25
    • 66149188263 scopus 로고    scopus 로고
    • Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells
    • Furukawa, K., Abe, H., Hibino, K., Sako, Y., Tsuneda, S., and Ito, Y. (2009) Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells Bioconjugate Chem.
    • (2009) Bioconjugate Chem.
    • Furukawa, K.1    Abe, H.2    Hibino, K.3    Sako, Y.4    Tsuneda, S.5    Ito, Y.6
  • 26
    • 59849083263 scopus 로고    scopus 로고
    • Reduction-triggered red fluorescent probes for dual-color detection of oligonucleotide sequences
    • Furukawa, K., Abe, H., Wang, J., Uda, M., Koshino, H., Tsuneda, S., and Ito, Y. (2009) Reduction-triggered red fluorescent probes for dual-color detection of oligonucleotide sequences Org. Biomol. Chem. 7, 671-7
    • (2009) Org. Biomol. Chem. , vol.7 , pp. 671-677
    • Furukawa, K.1    Abe, H.2    Wang, J.3    Uda, M.4    Koshino, H.5    Tsuneda, S.6    Ito, Y.7
  • 27
    • 70149090352 scopus 로고    scopus 로고
    • Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probes
    • Pianowski, Z., Gorska, K., Oswald, L., Merten, C. A., and Winssinger, N. (2009) Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probes J. Am. Chem. Soc.
    • (2009) J. Am. Chem. Soc.
    • Pianowski, Z.1    Gorska, K.2    Oswald, L.3    Merten, C.A.4    Winssinger, N.5
  • 28
    • 70450206828 scopus 로고    scopus 로고
    • Efficient nucleic acid detection by templated reductive quencher release
    • Franzini, R. M. and Kool, E. T. (2009) Efficient nucleic acid detection by templated reductive quencher release J. Am. Chem. Soc. 131, 16021-3
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 16021-16023
    • Franzini, R.M.1    Kool, E.T.2
  • 29
    • 41449103557 scopus 로고    scopus 로고
    • Diamine catalyzed hemicyanine dye formation from nonfluorescent precursors through DNA programmed chemistry
    • Huang, Y. and Coull, J. M. (2008) Diamine catalyzed hemicyanine dye formation from nonfluorescent precursors through DNA programmed chemistry J. Am. Chem. Soc. 130, 3238-9
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 3238-3239
    • Huang, Y.1    Coull, J.M.2
  • 30
    • 70350576658 scopus 로고    scopus 로고
    • A fluorogenic, nucleic acid directed click reaction
    • Jentzsch, E. and Mokhir, A. (2009) A fluorogenic, nucleic acid directed click reaction Inorg. Chem. 48, 9593-5
    • (2009) Inorg. Chem. , vol.48 , pp. 9593-9595
    • Jentzsch, E.1    Mokhir, A.2
  • 31
    • 15044343679 scopus 로고    scopus 로고
    • Improved nucleic acid triggered probe activation through the use of a 5-thiomethyluracil peptide nucleic acid building block
    • Cai, J., Li, X., and Taylor, J. S. (2005) Improved nucleic acid triggered probe activation through the use of a 5-thiomethyluracil peptide nucleic acid building block Org. Lett. 7, 751-4
    • (2005) Org. Lett. , vol.7 , pp. 751-754
    • Cai, J.1    Li, X.2    Taylor, J.S.3
  • 32
    • 54749148220 scopus 로고    scopus 로고
    • Target-catalyzed transfer reactions for the amplified detection of RNA
    • Grossmann, T. N., Roglin, L., and Seitz, O. (2008) Target-catalyzed transfer reactions for the amplified detection of RNA Angew. Chem., Int. Ed. Engl. 47, 7119-22
    • (2008) Angew. Chem., Int. Ed. Engl. , vol.47 , pp. 7119-7122
    • Grossmann, T.N.1    Roglin, L.2    Seitz, O.3
  • 33
    • 54349094314 scopus 로고    scopus 로고
    • Achieving turnover in DNA-templated reactions
    • Grossmann, T. N., Strohbach, A., and Seitz, O. (2008) Achieving turnover in DNA-templated reactions ChemBioChem 9, 2185-92
    • (2008) ChemBioChem , vol.9 , pp. 2185-2192
    • Grossmann, T.N.1    Strohbach, A.2    Seitz, O.3
  • 34
    • 0037070620 scopus 로고    scopus 로고
    • Quencher as leaving group: Efficient detection of DNA-joining reactions
    • Sando, S. and Kool, E. T. (2002) Quencher as leaving group: efficient detection of DNA-joining reactions J. Am. Chem. Soc. 124, 2096-7
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 2096-2097
    • Sando, S.1    Kool, E.T.2
  • 35
    • 0942276309 scopus 로고    scopus 로고
    • Quenched auto-ligating DNAs: Multicolor identification of nucleic acids at single nucleotide resolution
    • Sando, S., Abe, H., and Kool, E. T. (2004) Quenched auto-ligating DNAs: multicolor identification of nucleic acids at single nucleotide resolution J. Am. Chem. Soc. 126, 1081-7
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 1081-1087
    • Sando, S.1    Abe, H.2    Kool, E.T.3
  • 36
    • 7444243906 scopus 로고    scopus 로고
    • Destabilizing universal linkers for signal amplification in self-ligating probes for RNA
    • Abe, H. and Kool, E. T. (2004) Destabilizing universal linkers for signal amplification in self-ligating probes for RNA J. Am. Chem. Soc. 126, 13980-6
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 13980-13986
    • Abe, H.1    Kool, E.T.2
  • 38
    • 25144520515 scopus 로고    scopus 로고
    • Molecular assembly of superquenchers in signaling molecular interactions
    • Yang, C. J., Lin, H., and Tan, W. (2005) Molecular assembly of superquenchers in signaling molecular interactions J. Am. Chem. Soc. 127, 12772-3
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 12772-12773
    • Yang, C.J.1    Lin, H.2    Tan, W.3
  • 39
    • 38049074325 scopus 로고    scopus 로고
    • New, stronger nucleophiles for nucleic acid-templated chemistry: Synthesis and application in fluorescence detection of cellular RNA
    • Miller, G. P., Silverman, A. P., and Kool, E. T. (2008) New, stronger nucleophiles for nucleic acid-templated chemistry: Synthesis and application in fluorescence detection of cellular RNA Bioorg. Med. Chem. 16, 56-64
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 56-64
    • Miller, G.P.1    Silverman, A.P.2    Kool, E.T.3
  • 40
    • 26444581340 scopus 로고    scopus 로고
    • Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA
    • Silverman, A. P. and Kool, E. T. (2005) Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA Nucleic Acids Res. 33, 4978-86
    • (2005) Nucleic Acids Res. , vol.33 , pp. 4978-4986
    • Silverman, A.P.1    Kool, E.T.2
  • 41
    • 0033855457 scopus 로고    scopus 로고
    • Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
    • Fuchs, B. M., Glockner, F. O., Wulf, J., and Amann, R. (2000) Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes Appl. Environ. Microbiol. 66, 3603-7
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3603-3607
    • Fuchs, B.M.1    Glockner, F.O.2    Wulf, J.3    Amann, R.4
  • 42
    • 33845417187 scopus 로고    scopus 로고
    • RNA-templated chemistry in cells: Discrimination of Escherichia, Shigella and Salmonella bacterial strains with a new two-color FRET strategy
    • Silverman, A. P., Baron, E. J., and Kool, E. T. (2006) RNA-templated chemistry in cells: discrimination of Escherichia, Shigella and Salmonella bacterial strains with a new two-color FRET strategy ChemBioChem 7, 1890-4
    • (2006) ChemBioChem , vol.7 , pp. 1890-1894
    • Silverman, A.P.1    Baron, E.J.2    Kool, E.T.3


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