The structure of elongated viral capsids

Biophysical Journal

Volumn 98, Issue 12, 2010, Pages 2993-3003

  Luque, Antoni ^a   Reguera, David ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

MIRIDAE;

EID: 77953608086     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.02.051     Document Type: Article

References (40)

1. Flint, S. J., L. W. Enquist, A. M. Skalka. 2004. Principles of Virology. ASM Press, Washington, DC.
2. Douglas, T., and M. Young. 2006. Viruses: making friends with old foes. Science. 312:873-875.
3. Lee, S.-W., C. Mao, A. M. Belcher. 2002. Ordering of quantum dots using genetically engineered viruses. Science. 296:892-895.
4. Hu, Y., R. Zandi, W. M. Gelbart. 2008. Packaging of a polymer by a viral, capsid: the interplay between polymer length, and capsid size. Biophys. J. 94:1428-1436.
5. Sun, J., C. DuFort, B. Dragnea. 2007. Core-controlled polymorphism in virus-like particles. Proc. Natl. Acad, Sci. USA, 104:1354-1359.
6. Adolph, K. W., and P. J. Butler. 1976. Assembly of a spherical plant virus. Philos. Trans. R. Soc. Lond., B. 276:113-122.
7. Bancroft, J. B., C. E. Bracker, and G. W. Wagner. 1969. Structures derived from cowpea chlorotic mottle and brome mosaic virus protein. Virology. 38:324-335.
8. Lavelle, L., M. Gingery, J. Ruiz-Garcia. 2009. Phase diagram of self-assembled viral capsid protein polymorphs. J. Chem. Phys. 113:3813-3819.
9. Ganser, B. K., S. Li, W. I. Sundquist. 1999. Assembly and analysis of conical models for the HIV-1 core. Science. 283:80-83.
10. Heymann, J. B., C. Butan, A. C. Steven. 2008. Irregular and semiregular polyhedral models for Rous sarcoma virus cores. Comp. Math. Methods Med. 9:197-210.
11. Zlotnick, A. 2003. Are weak, protein-protein interactions the general rule in capsid assembly? Virology. 315:269-274.
12. Zandi, R., D. Reguera, J. Rudnick. 2004. Origin of icosahedral symmetry in viruses. Proc. Natl. Acad. Sci. USA. 101: 15556-15560.
13. Luque, A., R. Zandi, and D. Reguera. 2010. Optimal architectures of elongated viruses. Proc. Natl. Acad. Sci. USA. 107:5323-5328.
14. Crick, F. H. C., and J. D. Watson. 1956. Structure of small viruses. Nature. 173:473-475.
15. Coxeter, H. S. M. 1989. Introduction to Geometry, 2nd Ed. Wiley, New York.
16. Tidona, C. A. and G. Darai (Eds.). 2002. The Springer Index of Viruses. Springer-Verlag, Berlin, Heidelberg.
17. Nguyen, T. T., R. F. Bruinsma, and W. M. Gelbart. 2005. Elasticity theory and shape transitions of viral shells. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 72:051923.
18. Chen, T., and S. C. Glotzer. 2007. Simulation studies of a phenomenological model for elongated virus capsid formation. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 75:051504.
19. Nguyen, H. D., and C. L. Brooks, 3rd. 2008. Generalized structural polymorphism in self-assembled viral particles. Nano Lett. 8: 4574-4581.
20. Caspar, D. L. D., and A. Klug. 1962. Physical principles in the construction of regular viruses. Cold Spring Harb. Symp. Quant. Biol. 27:1-24.
21. Moody, M. F. 1965. The shape of the T-even bacteriophage head. Virology. 26:567-576.
22. Carrillo-Tripp, M., C. M. Shepherd, V. S. Reddy. 2009. VIPERdb2: an enhanced and web API enabled relational database for structural virology. Nucleic Acids Res. 37(Database issue):D436-D442.
23. Kerner, R. 2008. Classification and evolutionary trends of icosahedral viral capsids. Comp. Math. Methods Med. 9:175-181.
24. Zandi, R., and D. Reguera. 2005. Mechanical properties of viral capsids. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 72:021917.
25. Grimes, J. M., J. N. Burroughs, D. I. Stuart. 1998. The atomic structure of the bluetongue virus core. Nature. 395:470-478.
26. Salunke, D. M., D. L. D. Caspar, and R. L. Garcea. 1989. Polymorphism in the assembly of Polyomavirus capsid protein. VP1. Biophys. J. 56:887-900.
27. Twarock, R. 2004. A tiling approach to virus capsid assembly explaining a structural puzzle in virology. J. Theor. Biol. 226:477-482.
28. Twarock, R. 2005. Mathematical models for tubular structures in the family of Papovaviridae. Bull. Math. Biol. 67:973-987.
29. Moody, M. F. 1999. Geometry of phage head construction. J. Mol. Biol. 293:401-433.
30. Tao, Y., N. H. Olson, T. S. Baker. 1998. Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell. 95:431-437.
31. Fokine, A., P. R. Chipman, M. G. Rossmann. 2004. Molecular architecture of the prolate head of bacteriophage T4. Proc Natl. Acad. Sci, USA. 101:6003-6008.
32. Hull, R., G. J. Hills, and R. Markham. 1969. Studies on alfalfa mosaic virus. II. The structure of the virus components. Virology. 37:416-428.
33. Hull, R. 1976. The structure of tubular viruses. Adv. Virus Res. 20:1-32.
34. Heijtink, R. A., C. J. Houwing, and E. M. J. Jaspars. 1977. Molecular weights of particles and RNAs of alfalfa mosaic virus. Number of subunits in protein capsids. Biochemistry. 16:4684-4693.
35. Hull, R. 1996. Molecular biology of rice tungro viruses. Annu. Rev. Phytopathol. 34:275-297.
36. Cusack, S., G. T. Oostergetel, J. E. Mellema. 1983. Structure of the top A-T component of alfalfa mosaic virus. A non-icosahedral virion. J. Mol. Biol. 171:139-155.
37. Saito, R., M. S. Dresselhaus, and G. Dresselhaus. 1998. Physical Properties of Carbon Nanotubes. Imperial College Press, London, UK.
38. Kumar, A., V. S. Reddy, J. E. Johnson. 1997. The structure of alfalfa mosaic virus capsid protein assembled as a T=1 icosahedral particle at 4.0-Å resolution. J. Virol. 71:7911-7916.
39. Kiselev, N. A., and A. Klug. 1969. The structure of viruses of the papilloma-polyoma type. V. Tubular variants built of pentamers. J. Mol. Biol. 40:155-171.
40. Baker, T. S., D. L. D. Caspar, and W. T. Murakami. 1983. Polyoma virus 'hexamer' tubes consist of paired pentamers. Nature. 303: 446-448.