Time-resolved genetic responses of Lactococcus lactis to a dairy environment

Environmental Microbiology

Volumn 12, Issue 5, 2010, Pages 1260-1270

  Bachmann, Herwig ^a,b,e   de Wilt, Leonie ^a,e   Kleerebezem, Michiel ^a,b,c   van Hylckama Vlieg, Johan E T ^a,b,d  

^a NIZO FOOD RESEARCH   (Netherlands)

^b KLUYVER CENTRE FOR GENOMICS OF INDUSTRIAL FERMENTATION   (Netherlands)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d DANONE RESEARCH   (France)

^e VU UNIVERSITY AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; LUCIFERASE;

ARTICLE; BACTERIAL COUNT; CHEESE; DAIRYING; GENE EXPRESSION REGULATION; GENETIC RECOMBINATION; GENETICS; LACTOCOCCUS LACTIS; METABOLISM; METHODOLOGY; MICROBIOLOGY; PROMOTER REGION; REPORTER GENE; TIME; PROCEDURES; TIME FACTOR;

BACTERIAL PROTEINS; CHEESE; COLONY COUNT, MICROBIAL; DAIRYING; GENE EXPRESSION REGULATION; GENES, REPORTER; LACTOCOCCUS LACTIS; LUCIFERASES; PROMOTER REGIONS, GENETIC; RECOMBINATION, GENETIC; TIME FACTORS;

BACTERIA (MICROORGANISMS); LACTOCOCCUS LACTIS;

EID: 77953568690     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2010.02168.x     Document Type: Article

References (38)

1. Bachmann H, Kleerebezem M, van Hylckama Vlieg JE. High-throughput identification and validation of in situ-expressed genes of Lactococcus lactis. Appl Environ Microbiol 2008, 74:4727-4736.
2. Bachmann H, Kruijswijk Z, Molenaar D, Kleerebezem M, van Hylckama Vlieg JE. A high-throughput cheese manufacturing model for effective cheese starter culture screening. J Dairy Sci 2009, 92:5868-5882.
3. Bissonnette F, Labrie S, Deveau H, Lamoureux M, Moineau S. Characterization of mesophilic mixed starter cultures used for the manufacture of aged cheddar cheese. J Dairy Sci 2000, 83:620-627.
4. Cases I, de Lorenzo V. Promoters in the environment: transcriptional regulation in its natural context. Nat Rev Microbiol 2005, 3:105-118.
5. Cogan TM, Barbosa M, Beuvier E, Bianchi-Salvadori B, Cocconcelli PS, Fernandes I. Characterization of the lactic acid bacteria in artisanal dairy products. J Dairy Res 1997, 64:409-421.
6. Dressaire C, Redon E, Milhem H, Besse P, Loubiere P, Cocaign-Bousquet M. Growth rate regulated genes and their wide involvement in the Lactococcus lactis stress responses. BMC Genomics 2008, 9:343.
7. Gitton C, Meyrand M, Wang J, Caron C, Trubuil A, Guillot A, Mistou MY. Proteomic signature of Lactococcus lactis NCDO763 cultivated in milk. Appl Environ Microbiol 2005, 71:7152-7163.
8. Goffin P, Lorquet F, Kleerebezem M, Hols P. Major role of NAD-dependent lactate dehydrogenases in aerobic lactate utilization in Lactobacillus plantarum during early stationary phase. J Bacteriol 2004, 186:6661-6666.
9. Goffin P, Muscariello L, Lorquet F, Stukkens A, Prozzi D, Sacco M. Involvement of pyruvate oxidase activity and acetate production in the survival of Lactobacillus plantarum during the stationary phase of aerobic growth. Appl Environ Microbiol 2006, 72:7933-7940.
10. van de Guchte M, Serror P, Chervaux C, Smokvina T, Ehrlich SD, Maguin E. Stress responses in lactic acid bacteria. Antonie Van Leeuwenhoek 2002, 82:187-216.
11. Guedon E, Serror P, Ehrlich SD, Renault P, Delorme C. Pleiotropic transcriptional repressor CodY senses the intracellular pool of branched-chain amino acids in Lactococcus lactis. Mol Microbiol 2001, 40:1227-1239.
12. Guedon E, Sperandio B, Pons N, Ehrlich SD, Renault P. Overall control of nitrogen metabolism in Lactococcus lactis by CodY, and possible models for CodY regulation in Firmicutes. Microbiology 2005, 151:3895-3909.
13. den Hengst CD, van Hijum SA, Geurts JM, Nauta A, Kok J, Kuipers OP. The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element. J Biol Chem 2005, 280:34332-34342.
14. Llanos RM, Hillier AJ, Davidson BE. Cloning, nucleotide sequence, expression, and chromosomal location of ldh, the gene encoding l-(+)-lactate dehydrogenase, from Lactococcus lactis. J Bacteriol 1992, 174:6956-6964.
15. Luesink EJ, van Herpen RE, Grossiord BP, Kuipers OP, de Vos WM. Transcriptional activation of the glycolytic las operon and catabolite repression of the gal operon in Lactococcus lactis are mediated by the catabolite control protein CcpA. Mol Microbiol 1998, 30:789-798.
16. Madsen SM, Hindre T, Le Pennec JP, Israelsen H, Dufour A. Two acid-inducible promoters from Lactococcus lactis require the cis-acting ACiD-box and the transcription regulator RcfB. Mol Microbiol 2005, 56:735-746.
17. Miyoshi A, Rochat T, Gratadoux JJ, Le Loir Y, Oliveira SC, Langella P, Azevedo V. Oxidative stress in Lactococcus lactis. Genet Mol Res 2003, 2:348-359.
18. Nystrom T, Neidhardt FC. Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest. Mol Microbiol 1994, 11:537-544.
19. Raynaud S, Perrin R, Cocaign-Bousquet M, Loubiere P. Metabolic and transcriptomic adaptation of Lactococcus lactis subsp. lactis Biovar diacetylactis in response to autoacidification and temperature downshift in skim milk. Appl Environ Microbiol 2005, 71:8016-8023.
20. Rediers H, Rainey PB, Vanderleyden J, De Mot R. Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiol Mol Biol Rev 2005, 69:217-261.
21. Redon E, Loubiere P, Cocaign-Bousquet M. Transcriptome analysis of the progressive adaptation of Lactococcus lactis to carbon starvation. J Bacteriol 2005, 187:3589-3592.
22. Rijnen L, Yvon M, van Kranenburg R, Courtin P, Verheul A, Chambellon E, Smit G. Lactococcal aminotransferases AraT and BcaT are key enzymes for the formation of aroma compounds from amino acids in cheese. Int Dairy J 2003, 13:805-812.
23. Roginski H. Encyclopedia of Dairy Sciences 2003, ed., San Diego, USA, Academic Press/Elsevier Science
24. Sanders JW, Leenhouts KJ, Haandrikman AJ, Venema G, Kok J. Stress response in Lactococcus lactis: cloning, expression analysis, and mutation of the lactococcal superoxide dismutase gene. J Bacteriol 1995, 177:5254-5260.
25. Sanders JW, Leenhouts K, Burghoorn J, Brands JR, Venema G, Kok J. A chloride-inducible acid resistance mechanism in Lactococcus lactis and its regulation. Mol Microbiol 1998, 27:299-310.
26. Silby MW, Levy SB. Overlapping protein-encoding genes in Pseudomonas fluorescens Pf0-1. PLoS Genet 2008, 4:e1000094.
27. Simal S, Sánchez ES, Bon J, Femenia A, Rosselló C. Water and salt diffusion during cheese ripening: effect of the external and internal resistances to mass transfer. J Food Eng 2001, 48:269-275.
28. Smeianov VV, Wechter P, Broadbent JR, Hughes JE, Rodriguez BT, Christensen TK. Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium. Appl Environ Microbiol 2007, 73:2661-2672.
29. Smit BA, van Hylckama Vlieg JE, Engels WJ, Meijer L, Wouters JT, Smit G. Identification, cloning, and characterization of a Lactococcus lactis branched-chain alpha-keto acid decarboxylase involved in flavor formation. Appl Environ Microbiol 2005a, 71:303-311.
30. Smit G, Smit BA, Engels WJ. Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products. FEMS Microbiol Rev 2005b, 29:591-610.
31. Sperandio B, Polard P, Ehrlich DS, Renault P, Guedon E. Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403. J Bacteriol 2005, 187:3762-3778.
32. Sturn A, Quackenbush J, Trajanoski Z. Genesis: cluster analysis of microarray data. Bioinformatics 2002, 18:207-208.
33. Tamir-Ariel D, Navon N, Burdman S. Identification of genes in Xanthomonas campestris pv. vesicatoria induced during its interaction with tomato. J Bacteriol 2007, 189:6359-6371.
34. Wegmann U, O'Connell-Motherway M, Zomer A, Buist G, Shearman C, Canchaya C. Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol 2007, 189:3256-3270.
35. Wels M, Kormelink TG, Kleerebezem M, Siezen RJ, Francke C. An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters. BMC Genomics 2008, 9:330.
36. Winkel SA, Richardson GH. Cell mass and acid production of proteinase-positive and proteinase-negative lactic cultures in buffered nonfat milk. J Dairy Sci 1984, 67:2856-2859.
37. Xie Y, Chou LS, Cutler A, Weimer B. DNA macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses. Appl Environ Microbiol 2004, 70:6738-6747.
38. Yvon M, Rijnen L. Cheese flavour formation by amino acid catabolism. Int Dairy J 2001, 11:185-201.