Characterization of a rolling-circle replication plasmid pXY3 from Lactobacillus plantarum XY3

Plasmid

Volumn 64, Issue 1, 2010, Pages 36-40

  Zhou, Hui ^a   Hao, Yanling ^a   Xie, Ying ^a   Yin, Sheng ^a   Zhai, Zhengyuan ^a   Han, Beizhong ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Dso; Lactobacillus plantarum; Plasmid; Rep; SsoT

Indexed keywords

ARTICLE; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE REPLICATION; LACTOBACILLUS PLANTARUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PLASMID XY3; PROTEIN ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SOUTHERN BLOTTING; AGAR GEL ELECTROPHORESIS; CHROMOSOME MAP; DNA REPLICATION; DNA REPLICATION ORIGIN; DNA SEQUENCE; GENE DOSAGE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS;

BASE SEQUENCE; DNA REPLICATION; DNA, BACTERIAL; DNA, CIRCULAR; DNA, SINGLE-STRANDED; ELECTROPHORESIS, AGAR GEL; GENE DOSAGE; LACTOBACILLUS PLANTARUM; MOLECULAR SEQUENCE DATA; PHYSICAL CHROMOSOME MAPPING; PLASMIDS; REPLICATION ORIGIN; SEQUENCE ANALYSIS, DNA;

LACTOBACILLUS PLANTARUM;

BACTERIAL DNA; CIRCULAR DNA; SINGLE STRANDED DNA;

EID: 77953535189     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2010.03.003     Document Type: Article

References (28)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
2. Andrup L., Jensen G.B., Wilcks A., Smidt L., Hoflack L., Mahillon J. The patchwork nature of rolling-circle plasmid: comparison of six plasmids from two distinct Bacillus thuringiensis serotypes. Plasmid 2003, 49:205-232.
3. Boe L., Nielsen T.T., Madsen S.M., Andrup L., Bolander G. Cloning and characterization of two plasmids from Bacillus thuringiensis in Bacillus subtilis. Plasmid 1991, 25:190-197.
4. Boer D.R., Ruíz-Masó J.A., López-Blanco J.R., Blanco A.G., Vives-Llàcer M., Chacón P., Usón I., Gomis-Rüth F.X., Espinosa M., Oscar Llorca, del Solar Gloria, Coll M. Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains. EMBO J. 2009, 28:1666-1678.
5. del Solar G., Espinosa M. The copy number of plasmid pLS1 is regulated by two trans-acting plasmid products: the antisense RNA II and the repressor protein, RepA. Mol. Microbiol. 1992, 6:83-94.
6. del Solar G., Moscoso M., Espinosa M. Rolling circle-replication plasmid from Gram-positive and Gram-negative bacteria: a wall falls. Mol. Microbiol. 1993, 8:789-796.
7. Feld L., Bielak E., Hammer K., Wilcks A. Characterization of a small erythromycin resistance plasmid pLFE1 from the food-isolate Lactobacillus plantarum M345. Plasmid 2009, 61:159-170.
8. Francia M.V., Varsaki A., Garcillan-Barcia M.P., Latorre A., Drainas C., de la Cruz F. A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol. Rev. 2004, 28:79-100.
9. Gomis-Rüth F.X., Solà M., Acebo P., Párraga A., Guasch A., Eritja R., González A., Espinosa M., del Solar G., Coll M. The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator. EMBO J. 1998, 17:7404-7415.
10. Guzmán L., Espinosa M. The mobilization protein, MobM, of the streptococcal plasmid pMV158 specifically cleaves supercoiled DNA at the plasmid oriT. J. Mol. Biol. 1997, 266:688-702.
11. Hoflack L., Wilcks A., Andrup L., Mahillon J. Functional insights into pGI2, a cryptic rolling-circle replicating plasmid from Bacillus thuringiensis. Microbiology 1999, 145:1519-1530.
12. Khan S.A. Rolling-circle replication of bacterial plasmids. Microbiol. Mol. Biol. Rev. 1997, 61:442-455.
13. Khan S.A. Plasmid rolling-circle replication: highlights of two decades of research. Plasmid 2005, 53:126-136.
14. Lacks S.A., Lopez P., Greenberg B., Espinosa M. Identification and analysis of genes for tetracycline resistance and replication functions in the broad-host-range plasmid pLS1. J. Mol. Biol. 1986, 192:753-765.
15. Lee C.L., Ow D.S.W., Oh S.K.W. Quantitative real-time polymerase chain reaction for determination of plasmid copy number in bacteria. J. Microbiol. Methods 2006, 65:258-267.
16. Li R.Y., Zhai Z.Y., Yin S., Huang Y., Wang Q., Luo Y.B., Hao Y.L. Characterization of a rolling-circle replication plasmid pLR1 from Lactobacillus plantarum LR1. Curr. Microbiol. 2009, 58:106-110.
17. Marchler B.A., Anderson J.B., Cherukuri P.F., Deweese-scott C., Geer L.Y., Gwadz M., He S., Hurwitz D.I., Jackson J.D., Ke Z., Lanczycki C.J., Liebert C.A., Liu C., Lu F., Marchler G.H., Mullokandov M., Shoemaker B.A., Simonyan V., Song J.S., Thiessen P.A., Yamashita R.A., Yin J.J., Zhang D., Bryant S.H. CDD: a conserved domain database for protein classification. Nucleic Acids Res. 2005, 33:D192-D196.
18. Motlagh A., Bukhtiyarova M., Ray B. Complete nucleotide sequence of pSMB74, a plasmid encoding the production of pediocin AcH in Pediococcus acidilactici. Lett. Appl. Microbiol. 1994, 18:305-312.
19. Murry K.D., Aronstein K.A., de Leon J.H. Analysis of pMA67, a predicted rolling-circle replication, mobilizable, tetracycline-resistance plasmid from the honey bee pathogen, Paenibacillus larvae. Plasmid 2007, 58:89-100.
20. O'Sulivan D.J., Klaenhammer T.R. Rapid Mini-Prep isolation of high-quality plasmid DNA from Lactococcus and Lactobacillus spp. Appl. Environ. Microbiol. 1993, 59:2730-2733.
21. Ruiz-Masó J.A., LurZ R., Espinosa M., del Solar G. Interactions between the RepB initiator protein of plasmid pMV158 and two distant DNA regions within the origin of replication. Nucleic Acids Res. 2007, 35:1230-1244.
22. Sambrook J., Russell DW. Molecular cloning: a laboratory manual 2001, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. third ed.
23. Serry L., Devine K.M. Analysis of features contributing to activity of the single-stranded origin of Bacillus plasmid pBAA1. J. Bacteriol. 1993, 175:1988-1994.
24. te Riele H., Michel B., Ehrlich S.D. Single-stranded plasmid DNA in Bacillus subtilis and Staphylococcus aureus. Proc. Natl. Acad. Sci. USA 1986, 83:2541-2545.
25. van Kranenburg R., Golic N., Bongers R., Leer R.J., de Vos W.M., Siezen R.J., Kleerebezem M. Functional analysis of three plasmids from Lactobacillus plantarum. Appl. Environ. Microbiol. 2005, 71:1223-1230.
26. Vries M.C., Vaughan E., Kleerebezem M., de Vos W.M. Lactobacillus plantarum - survival, functional and potential probiotic properties in the human intestinal tract. Int. Dairy J. 2006, 16:1018-1028.
27. Yin S., Hao Y.L., Zhai Z.Y., Li R.Y., Huang Y., Tian H., Luo Y.B. Characterization of a cryptic plasmid pM4 from Lactobacillus plantarum M4. FEMS Microbiol. Lett. 2008, 285:183-187.
28. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.