메뉴 건너뛰기




Volumn 9, Issue 5, 2010, Pages 762-773

Abundant 5S rRNA-Like transcripts encoded by the mitochondrial genome in Amoebozoa

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MITOCHONDRIAL DNA; RNA 5S;

EID: 77953514260     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.00013-10     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 70349467827 scopus 로고    scopus 로고
    • Mitochondrial tRNA import-the challenge to understand has just begun
    • Alfonzo, J. D., and D. Söll. 2009. Mitochondrial tRNA import-the challenge to understand has just begun. Biol. Chem. 390: 717-722.
    • (2009) Biol. Chem , vol.390 , pp. 717-722
    • Alfonzo, J.D.1    Söll, D.2
  • 2
    • 0031753256 scopus 로고    scopus 로고
    • Insertional editing of mitochondrial tRNAs of Physarum polycephalum and Didymium nigripes
    • Antes, T., H. Costandy, R. Mahendran, M. Spottswood, and D. Miller. 1998. Insertional editing of mitochondrial tRNAs of Physarum polycephalum and Didymium nigripes. Mol. Cell. Biol. 18: 7521-7527.
    • (1998) Mol. Cell. Biol , vol.18 , pp. 7521-7527
    • Antes, T.1    Costandy, H.2    Mahendran, R.3    Spottswood, M.4    Miller, D.5
  • 3
    • 0037369994 scopus 로고    scopus 로고
    • Discovery and characterization of Acanthamoeba castellanii mitochondrial 5S rRNA
    • Bullerwell, C. E., M. N. Schnare, and M. W. Gray. 2003. Discovery and characterization of Acanthamoeba castellanii mitochondrial 5S rRNA. RNA 9: 287-292.
    • (2003) RNA , vol.9 , pp. 287-292
    • Bullerwell, C.E.1    Schnare, M.N.2    Gray, M.W.3
  • 4
    • 4444336611 scopus 로고    scopus 로고
    • Unexpectedly complex editing patterns at dinucleotide insertion sites in Physarum mitochondria
    • Byrne, E. M., and J. M. Gott. 2004. Unexpectedly complex editing patterns at dinucleotide insertion sites in Physarum mitochondria. Mol. Cell. Biol. 24: 7821-7828.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 7821-7828
    • Byrne, E.M.1    Gott, J.M.2
  • 7
    • 77149166632 scopus 로고    scopus 로고
    • Two forms of RNA editing are required for tRNA maturation in Physarum mitochondria
    • Gott, J. M., B. H. Somerlot, and M. W. Gray. 2010. Two forms of RNA editing are required for tRNA maturation in Physarum mitochondria. RNA 16: 482-488.
    • (2010) RNA , vol.16 , pp. 482-488
    • Gott, J.M.1    Somerlot, B.H.2    Gray, M.W.3
  • 8
    • 10944243685 scopus 로고    scopus 로고
    • Mitochondria of protists.Annu
    • Gray, M. W., B. F. Lang, and G. Burger. 2004. Mitochondria of protists.Annu. Rev. Genet. 38: 477-524.
    • (2004) Rev. Genet , vol.38 , pp. 477-524
    • Gray, M.W.1    Lang, B.F.2    Burger, G.3
  • 10
    • 3142766402 scopus 로고    scopus 로고
    • Detection and quantifica-tion of modified nucleotides in RNA using thin-layer chromatography. Methods Mol
    • Grosjean, H., G. Keith, and L. Droogmans. 2004. Detection and quantifica-tion of modified nucleotides in RNA using thin-layer chromatography. Methods Mol. Biol. 265: 357-391.
    • (2004) Biol , vol.265 , pp. 357-391
    • Grosjean, H.1    Keith, G.2    Droogmans, L.3
  • 11
    • 0016169270 scopus 로고
    • UV shadowing-a new andconvenient method for the location of ultraviolet-absorbing species in polyacrylamide gels
    • Hassur, S. M., and H. W. Whitlock. 1974. UV shadowing-a new andconvenient method for the location of ultraviolet-absorbing species in polyacrylamide gels. Anal. Biochem. 59: 162-164.
    • (1974) Anal. Biochem , vol.59 , pp. 162-164
    • Hassur, S.M.1    Whitlock, H.W.2
  • 12
    • 45849120142 scopus 로고    scopus 로고
    • Mitochondrial genome evolution in thesocial amoebae
    • Heidel, A. J., and G. Glöckner. 2008. Mitochondrial genome evolution in thesocial amoebae. Mol. Biol. Evol. 25: 1440-1450.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1440-1450
    • Heidel, A.J.1    Glöckner, G.2
  • 13
    • 77953232837 scopus 로고    scopus 로고
    • RNA editing in sixmitochondrial ribosomal protein genes of Didymium iridis
    • 19 February, [Epub ahead of print.] doi: 10.1007/s00294-010-0292-4
    • Hendrickson, P. G., and M. E. Silliker. 19 February 2010. RNA editing in sixmitochondrial ribosomal protein genes of Didymium iridis. Curr. Genet. [Epub ahead of print.] doi: 10.1007/s00294-010-0292-4.
    • (2010) Curr. Genet
    • Hendrickson, P.G.1    Silliker, M.E.2
  • 14
    • 4644345118 scopus 로고    scopus 로고
    • Pure multiple RNA sec-ondary structure alignments: A progressive profile approach. IEEE/ACM Trans
    • Höchsmann, M., B. Voss, and R. Giegerich. 2004. Pure multiple RNA sec-ondary structure alignments: a progressive profile approach. IEEE/ACM Trans. Comput. Biol. Bioinform. 1: 53-62.
    • (2004) Comput. Biol. Bioinform , vol.1 , pp. 53-62
    • Höchsmann, M.1    Voss, B.2    Giegerich, R.3
  • 15
    • 0033752609 scopus 로고    scopus 로고
    • Evolution of four types of RNAediting in myxomycetes
    • Horton, T. L., and L. F. Landweber. 2000. Evolution of four types of RNAediting in myxomycetes. RNA 6: 1339-1346.
    • (2000) RNA , vol.6 , pp. 1339-1346
    • Horton, T.L.1    Landweber, L.F.2
  • 16
    • 34548575630 scopus 로고    scopus 로고
    • Evolution of RNAediting sites in the mitochondrial small subunit rRNA of the Myxomycota
    • Krishnan, U., A. Barsamian, and D. L. Miller. 2007. Evolution of RNAediting sites in the mitochondrial small subunit rRNA of the Myxomycota. Methods Enzymol. 424: 197-220.
    • (2007) Methods Enzymol , vol.424 , pp. 197-220
    • Krishnan, U.1    Barsamian, A.2    Miller, D.L.3
  • 17
    • 4243638829 scopus 로고
    • The separation of adenosine, guanosine, cytidine anduridine by one-dimensional filter-paper chromatography
    • Lane, B. G. 1963. The separation of adenosine, guanosine, cytidine anduridine by one-dimensional filter-paper chromatography. Biochim. Biophys. Acta 72: 110-112.
    • (1963) Biochim. Biophys. Acta , vol.72 , pp. 110-112
    • Lane, B.G.1
  • 18
    • 0033367329 scopus 로고    scopus 로고
    • Mitochondrial genomeevolution and the origin of eukaryotes
    • Lang, B. F., M. W. Gray, and G. Burger. 1999. Mitochondrial genomeevolution and the origin of eukaryotes. Annu. Rev. Genet. 33: 351-397.
    • (1999) Annu. Rev. Genet , vol.33 , pp. 351-397
    • Lang, B.F.1    Gray, M.W.2    Burger, G.3
  • 19
    • 72249109366 scopus 로고    scopus 로고
    • Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support. BMC Evol
    • Liu, Y., E. T. Steenkamp, H. Brinkmann, L. Forget, H. Philippe, and B. F.Lang. 2009. Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support. BMC Evol. Biol. 9: 272.
    • (2009) Biol , vol.9 , pp. 272
    • Liu, Y.1    Steenkamp, E.T.2    Brinkmann, H.3    Forget, L.4    Philippe, H.5
  • 21
    • 0000635438 scopus 로고    scopus 로고
    • The structure and function of 5S ribosomal RNA, p.199-236
    • In R. A. Zimmermann and A. E. Dahlberg (ed.), CRC Press, Boca Raton, FL
    • Moore, P. B. 1996. The structure and function of 5S ribosomal RNA, p.199-236. In R. A. Zimmermann and A. E. Dahlberg (ed.), Ribosomal RNA: structure, evolution, processing and function in protein biosynthesis, CRC Press, Boca Raton, FL.
    • (1996) Ribosomal RNA: Structure, Evolution, Processing and Function In Protein Biosynthesis
    • Moore, P.B.1
  • 22
    • 0344012611 scopus 로고    scopus 로고
    • Properties of human mitochondrial ribosomes
    • O'Brien, T. W. 2003. Properties of human mitochondrial ribosomes. IUBMBLife 55: 505-513.
    • (2003) IUBMBLife , vol.55 , pp. 505-513
    • O'Brien, T.W.1
  • 23
    • 0018459544 scopus 로고
    • Direct chemical method for sequencing RNA
    • Peattie, D. A. 1979. Direct chemical method for sequencing RNA. Proc. Natl.Acad. Sci. U. S. A. 76: 1760-1764.
    • (1979) Proc. Natl.Acad. Sci. U. S. A , vol.76 , pp. 1760-1764
    • Peattie, D.A.1
  • 24
    • 0031883685 scopus 로고    scopus 로고
    • Characterization ofa novel small RNA encoded by Dictyostelium discoideum mitochondrial DNA
    • Pi, M., T. Morio, H. Urushihara, and Y. Tanaka. 1998. Characterization ofa novel small RNA encoded by Dictyostelium discoideum mitochondrial DNA. Mol. Gen. Genet. 257: 124-131.
    • (1998) Mol. Gen. Genet , vol.257 , pp. 124-131
    • Pi, M.1    Morio, T.2    Urushihara, H.3    Tanaka, Y.4
  • 25
    • 0033057502 scopus 로고    scopus 로고
    • Confirmation of predicted edits anddemonstration of unpredicted edits in Acanthamoeba castellanii mitochondrial tRNAs
    • Price, D. H., and M. W. Gray. 1999. Confirmation of predicted edits anddemonstration of unpredicted edits in Acanthamoeba castellanii mitochondrial tRNAs. Curr. Genet. 35: 23-29.
    • (1999) Curr. Genet , vol.35 , pp. 23-29
    • Price, D.H.1    Gray, M.W.2
  • 27
    • 0021940378 scopus 로고
    • Phenylalanine and tyrosine transfer RNAs encoded by Tetrahymena pyriformis mitochondrial DNA: Primary sequence, post-transcriptional modifications and gene localization
    • Schnare, M. N., T. Y. K. Heinonen, P. G. Young, and M. W. Gray. 1985.Phenylalanine and tyrosine transfer RNAs encoded by Tetrahymena pyriformis mitochondrial DNA: primary sequence, post-transcriptional modifications and gene localization. Curr. Genet. 9: 389-393.
    • (1985) Curr. Genet , vol.9 , pp. 389-393
    • Schnare, M.N.1    Heinonen, T.Y.K.2    Young, P.G.3    Gray, M.W.4
  • 28
    • 0141953259 scopus 로고    scopus 로고
    • Structure of the mammalian mitochondrial ribosome reveals an expanded function for its component proteins
    • Sharma, M. R., E. C. Koc, P. P. Datta, T. M. Booth, L. L. Spremulli, andR. K. Agrawal. 2003. Structure of the mammalian mitochondrial ribosome reveals an expanded function for its component proteins. Cell 115: 97-108.
    • (2003) Cell , vol.115 , pp. 97-108
    • Sharma, M.R.1    Koc, E.C.2    Datta, P.P.3    Booth, T.M.4    Spremulli, L.L.5    Agrawal, R.K.6
  • 30
    • 59449106678 scopus 로고    scopus 로고
    • Specific features of 5S rRNA structure-its interactions with macromolecules and possible functions
    • Smirnov, A. V., N. S. Entelis, I. A. Krasheninnikov, R. Martin, and I. A.Tarassov. 2008. Specific features of 5S rRNA structure-its interactions with macromolecules and possible functions. Biochemistry (Mosc.) 73: 1418-1437.
    • (2008) Biochemistry (Mosc.) , vol.73 , pp. 1418-1437
    • Smirnov, A.V.1    Entelis, N.S.2    Krasheninnikov, I.A.3    Martin, R.4
  • 31
    • 0000576686 scopus 로고
    • Isolation of wheatmitochondrial DNA and RNA, p. 347-360
    • In H. F. Linskens and J. F. Jackson (ed.), Springer-Verlag, Berlin, Germany
    • Spencer, D. F., M. W. Gray, and M. N. Schnare. 1992. Isolation of wheatmitochondrial DNA and RNA, p. 347-360. In H. F. Linskens and J. F. Jackson (ed.), Modern methods of plant analysis, vol. 4. Springer-Verlag, Berlin, Germany.
    • (1992) Modern Methods of Plant Analysis , vol.4
    • Spencer, D.F.1    Gray, M.W.2    Schnare, M.N.3
  • 32
    • 32544440797 scopus 로고    scopus 로고
    • RNAshapes: An integrated RNA analysis package based on abstract shapes
    • Steffen, P., B. Voss, M. Rehmsmeier, J. Reeder, and R. Giegerich. 2006.RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics 22: 500-503.
    • (2006) Bioinformatics , vol.22 , pp. 500-503
    • Steffen, P.1    Voss, B.2    Rehmsmeier, M.3    Reeder, J.4    Giegerich, R.5
  • 33
    • 77950274980 scopus 로고    scopus 로고
    • RNA editing of10 Didymium iridis mitochondrial genes and comparison with the homologous genes in Physarum polycephalum
    • Traphagen, S. J., M. J. Dimarco, and M. E. Silliker. 2010. RNA editing of10 Didymium iridis mitochondrial genes and comparison with the homologous genes in Physarum polycephalum. RNA 16: 828-838.
    • (2010) RNA , vol.16 , pp. 828-838
    • Traphagen, S.J.1    Dimarco, M.J.2    Silliker, M.E.3
  • 34
    • 0029375404 scopus 로고
    • Accurate and efficient inser-tional RNA editing in isolated Physarum mitochondria
    • Visomirski-Robic, L. M., and J. M. Gott. 1995. Accurate and efficient inser-tional RNA editing in isolated Physarum mitochondria. RNA 1: 681-691.
    • (1995) RNA , vol.1 , pp. 681-691
    • Visomirski-Robic, L.M.1    Gott, J.M.2
  • 35
    • 47849100472 scopus 로고    scopus 로고
    • Trypanosoma brucei mitochondrial ribosomes: Affinity purification and component identification by mass spectrometry
    • Zíková, A., A. K. Panigrahi, R. A. Dalley, N. Acestor, A. Anupama, Y. Ogata,P. J. Myler, and K. Stuart. 2008. Trypanosoma brucei mitochondrial ribosomes: affinity purification and component identification by mass spectrometry. Mol. Cell. Proteomics 7: 1286-1296.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1286-1296
    • Zíková, A.1    Panigrahi, A.K.2    Dalley, R.A.3    Acestor, N.4    Anupama, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.