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Volumn 257, Issue 2, 1998, Pages 124-131

Characterization of a novel small RNA encoded by dictyostelium discoideum mitochondrial DNA

Author keywords

5S rRNA; Dictyostelium discoideum; Mitochondrial DNA; Ribosome; Small RNA

Indexed keywords

MITOCHONDRIAL DNA; MITOCHONDRIAL RNA; RIBOSOME RNA; TRANSFER RNA;

EID: 0031883685     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050631     Document Type: Article
Times cited : (11)

References (47)
  • 2
    • 0028909209 scopus 로고
    • Codon usage, genetic code and phylogeny of Dictyostelium discoideum mitochondrial DNA as deduced from a 7.3 kb region
    • Angata K, Kuroe K, Yanagisawa K, Tanaka Y (1995a) Codon usage, genetic code and phylogeny of Dictyostelium discoideum mitochondrial DNA as deduced from a 7.3 kb region. Curr Genet 27:249-256
    • (1995) Curr Genet , vol.27 , pp. 249-256
    • Angata, K.1    Kuroe, K.2    Yanagisawa, K.3    Tanaka, Y.4
  • 3
    • 0028813873 scopus 로고
    • A group-I intron in the mitochondrial large subunit ribosomal RNA-encoding gene of Dictyostelium discoideum: Same site localization in alga and in vitro self-splicing
    • Angata K, Ogawa S, Yanagisawa K, Tanaka Y (1995b) A group-I intron in the mitochondrial large subunit ribosomal RNA-encoding gene of Dictyostelium discoideum: same site localization in alga and in vitro self-splicing. Gene 153:49-55
    • (1995) Gene , vol.153 , pp. 49-55
    • Angata, K.1    Ogawa, S.2    Yanagisawa, K.3    Tanaka, Y.4
  • 4
    • 0015208768 scopus 로고
    • Mitochondrial ribosomes in HeLa cells
    • Attardi G, Ojala D (1971) Mitochondrial ribosomes in HeLa cells. Nature 229:133-136
    • (1971) Nature , vol.229 , pp. 133-136
    • Attardi, G.1    Ojala, D.2
  • 5
    • 0028941560 scopus 로고
    • The mitochondrial DNA of the amoeboid protozoan Acanthamoeba castellanii: Complete sequence, gene content and genome organization
    • Burger G, Plante I, Lonergan KM, Gray MW (1995) The mitochondrial DNA of the amoeboid protozoan Acanthamoeba castellanii: complete sequence, gene content and genome organization. J Mol Biol 245:522-537
    • (1995) J Mol Biol , vol.245 , pp. 522-537
    • Burger, G.1    Plante, I.2    Lonergan, K.M.3    Gray, M.W.4
  • 6
    • 0011787926 scopus 로고
    • Partial sequence analysis of the 5S to 18S rRNA gene region of the maize mitochondrial genome
    • Chao S, Sederoff RR, Levings III CS (1983) Partial sequence analysis of the 5S to 18S rRNA gene region of the maize mitochondrial genome. Plant Physiol 71:190-193
    • (1983) Plant Physiol , vol.71 , pp. 190-193
    • Chao, S.1    Sederoff, R.R.2    Levings III, C.S.3
  • 7
    • 0028099715 scopus 로고
    • The Dictyostelium discoideum mitochondrial genome: A primordial system using the universal code and encoding hydrophilic proteins atypical of metazoan mitochondrial DNA
    • Cole RA, Williams KL (1994) The Dictyostelium discoideum mitochondrial genome: a primordial system using the universal code and encoding hydrophilic proteins atypical of metazoan mitochondrial DNA. J Mol Evol 39:579-588
    • (1994) J Mol Evol , vol.39 , pp. 579-588
    • Cole, R.A.1    Williams, K.L.2
  • 8
    • 0019332777 scopus 로고
    • PhyM: An RNase activity specific for U and a residues useful in RNA sequence analysis
    • Donis-Keller H (1980) PhyM: an RNase activity specific for U and A residues useful in RNA sequence analysis. Nucleic Acids Res 8:3133-3142
    • (1980) Nucleic Acids Res , vol.8 , pp. 3133-3142
    • Donis-Keller, H.1
  • 9
    • 0018877893 scopus 로고
    • Specific labeling of 3′ termini of RNA with T4 RNA ligase
    • England TE, Bruce AG, Uhlenbeck OC (1980) Specific labeling of 3′ termini of RNA with T4 RNA ligase. Methods Enzymol 65:65-74
    • (1980) Methods Enzymol , vol.65 , pp. 65-74
    • England, T.E.1    Bruce, A.G.2    Uhlenbeck, O.C.3
  • 10
    • 0022600046 scopus 로고
    • Collection of published 5S. 5.8S and 4.5S ribosomal RNA sequences
    • Erdmann VA, Wolters J (1986) Collection of published 5S. 5.8S and 4.5S ribosomal RNA sequences. Nucleic Acids Res 14: r1-r59
    • (1986) Nucleic Acids Res , vol.14
    • Erdmann, V.A.1    Wolters, J.2
  • 11
    • 0029113811 scopus 로고
    • The mitochondrial LSU rRNA of the brown alga Pylaiella littoralis reveals χ-protobacterial features and is split by four group IIB introns with an atypical phylogeny
    • Fontaine JM, Rousvoal S, Leblanc C, Kloareg B, Loiscaux-de Goer S (1995) The mitochondrial LSU rRNA of the brown alga Pylaiella littoralis reveals χ-protobacterial features and is split by four group IIB introns with an atypical phylogeny. J Mol Biol 251:378-389
    • (1995) J Mol Biol , vol.251 , pp. 378-389
    • Fontaine, J.M.1    Rousvoal, S.2    Leblanc, C.3    Kloareg, B.4    Loiscaux-de Goer, S.5
  • 12
    • 0014220924 scopus 로고
    • Nucleotide sequence of KB cell 5S RNA
    • Forget BG, Weissman SN (1967) Nucleotide sequence of KB cell 5S RNA. Science 158:1695-1699
    • (1967) Science , vol.158 , pp. 1695-1699
    • Forget, B.G.1    Weissman, S.N.2
  • 13
    • 0017493805 scopus 로고
    • A defined minimal medium for axenic strains of Dictyostelium discoideum
    • Franke J, Kessin RH (1977) A defined minimal medium for axenic strains of Dictyostelium discoideum. Proc Natl Acad Sci USA 74:2157-2161
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 2157-2161
    • Franke, J.1    Kessin, R.H.2
  • 14
    • 0024212067 scopus 로고
    • Rapid production of full-length cDNAs from rare transcripts: Amplication using a single gene-specific oligonucleotide primer
    • Frohman MA, Dush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: amplication using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85:8998-9002
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8998-9002
    • Frohman, M.A.1    Dush, M.K.2    Martin, G.R.3
  • 15
    • 0020299647 scopus 로고
    • Restriction map and gene organization of the mtDNA from D. discoideum
    • Fukuhara H (1982) Restriction map and gene organization of the mtDNA from D. discoideum. Biol Cell 46:321-324
    • (1982) Biol Cell , vol.46 , pp. 321-324
    • Fukuhara, H.1
  • 17
    • 0014914317 scopus 로고
    • Studies on nuclear structure and function in Tetrahymena pyriformis
    • Gorovsky MA (1970) Studies on nuclear structure and function in Tetrahymena pyriformis. J Cell Biol 47:619-623
    • (1970) J Cell Biol , vol.47 , pp. 619-623
    • Gorovsky, M.A.1
  • 18
    • 0027073347 scopus 로고
    • The endosymbiont hypothesis revisited
    • Gray MW (1992) The endosymbiont hypothesis revisited. Int Rev Cytol 141:233-257
    • (1992) Int Rev Cytol , vol.141 , pp. 233-257
    • Gray, M.W.1
  • 19
    • 0027466539 scopus 로고
    • Early branchings in the evolution of eukaryotes: Ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data
    • Hasegawa M, Hashimoto T, Adachi J, Iwabe N, Miyata T (1993) Early branchings in the evolution of eukaryotes: ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data. J Mol Evol 36:380-388
    • (1993) J Mol Evol , vol.36 , pp. 380-388
    • Hasegawa, M.1    Hashimoto, T.2    Adachi, J.3    Iwabe, N.4    Miyata, T.5
  • 20
    • 0023413051 scopus 로고
    • Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences
    • Hori H, Osawa S (1987) Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences. Mol Biol Evol 4:445-472
    • (1987) Mol Biol Evol , vol.4 , pp. 445-472
    • Hori, H.1    Osawa, S.2
  • 21
    • 0029654517 scopus 로고
    • Mitochondrial ribosomal protein L11 gene of Dictyostelium discoideum resides not in the nuclear genome but in the mitochondrial genome
    • Iwamoto M, Yanagisawa K, Tanaka Y (1995) Mitochondrial ribosomal protein L11 gene of Dictyostelium discoideum resides not in the nuclear genome but in the mitochondrial genome. DNA Res 2:129-132
    • (1995) DNA Res , vol.2 , pp. 129-132
    • Iwamoto, M.1    Yanagisawa, K.2    Tanaka, Y.3
  • 22
    • 0025361553 scopus 로고
    • Predicting optimal and suboptimal secondary structure for RNA
    • Jaeger JA, Turner DH, Zuker M (1989) Predicting optimal and suboptimal secondary structure for RNA. Methods Enzymol 183:281-306
    • (1989) Methods Enzymol , vol.183 , pp. 281-306
    • Jaeger, J.A.1    Turner, D.H.2    Zuker, M.3
  • 24
    • 0029004882 scopus 로고
    • Phylogenetic position of Dictyostileum inferred from multiple protein data sets
    • Kuma K, Nikoh N, Iwabe N, Miyata T (1995) Phylogenetic position of Dictyostileum inferred from multiple protein data sets. J Mol Evol 41:238-246
    • (1995) J Mol Evol , vol.41 , pp. 238-246
    • Kuma, K.1    Nikoh, N.2    Iwabe, N.3    Miyata, T.4
  • 25
    • 0346463683 scopus 로고    scopus 로고
    • A 5S rRNA gene is present in the mitochondrial genome of the protist Reclinomonas americana, but is absent from red algal mitochondrial DNA
    • Lang BF, Goff LJ, Gray MW (1996) A 5S rRNA gene is present in the mitochondrial genome of the protist Reclinomonas americana, but is absent from red algal mitochondrial DNA. J Mol Biol 9:603-612
    • (1996) J Mol Biol , vol.9 , pp. 603-612
    • Lang, B.F.1    Goff, L.J.2    Gray, M.W.3
  • 26
    • 0017063921 scopus 로고
    • Higher-plant mitochondrial ribosomes contain a 5S ribosomal ribonucleic acid component
    • Leaver CJ, Harmey MA (1976) Higher-plant mitochondrial ribosomes contain a 5S ribosomal ribonucleic acid component. Biochem J 157:275-277
    • (1976) Biochem J , vol.157 , pp. 275-277
    • Leaver, C.J.1    Harmey, M.A.2
  • 27
    • 0029161177 scopus 로고
    • Complete sequence of the mitochondrial DNA of the rhodophyte Chondrus crispus (Gigartinales). Gene content and genome organization
    • Leblanc C, Boyen C, Richard O, Bonnard G, Grienenberger JM, Kloareg B (1995) Complete sequence of the mitochondrial DNA of the rhodophyte Chondrus crispus (Gigartinales). Gene content and genome organization. J Mol Biol 250:484-495
    • (1995) J Mol Biol , vol.250 , pp. 484-495
    • Leblanc, C.1    Boyen, C.2    Richard, O.3    Bonnard, G.4    Grienenberger, J.M.5    Kloareg, B.6
  • 28
    • 0015208780 scopus 로고
    • Absence of a 5S RNA component in the mitochondrial ribosomes of Neurospora crassa
    • Lizardi PM, Luck DJL (1971) Absence of a 5S RNA component in the mitochondrial ribosomes of Neurospora crassa. Nature New Biol 229:140-143
    • (1971) Nature New Biol , vol.229 , pp. 140-143
    • Lizardi, P.M.1    Luck, D.J.L.2
  • 30
    • 0029583179 scopus 로고
    • Consensus phylogeny of Dictyostelium discoideum
    • Loomis WF, Smith DW (1995) Consensus phylogeny of Dictyostelium discoideum. Experimentia 51:1110-1115
    • (1995) Experimentia , vol.51 , pp. 1110-1115
    • Loomis, W.F.1    Smith, D.W.2
  • 31
    • 0021770781 scopus 로고
    • A novel soybean mitochondrial transcript resulting from a DNA rearrangement involving the 5S rRNA gene
    • Morgens PH, Grabau EA, Gesteland RF (1984) A novel soybean mitochondrial transcript resulting from a DNA rearrangement involving the 5S rRNA gene. Nucleic Acids Res 12:5665-5684
    • (1984) Nucleic Acids Res , vol.12 , pp. 5665-5684
    • Morgens, P.H.1    Grabau, E.A.2    Gesteland, R.F.3
  • 32
    • 0028983910 scopus 로고
    • Birth of the snoRNPs: The evolution of RNase M RP and the eukaryotic pre-rRNA-processing system
    • Morrissey JP, Tollervey D (1995) Birth of the snoRNPs: the evolution of RNase M RP and the eukaryotic pre-rRNA-processing system. Trends Biochem Sci 20:78-82
    • (1995) Trends Biochem Sci , vol.20 , pp. 78-82
    • Morrissey, J.P.1    Tollervey, D.2
  • 34
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
    • Oda K, Yamato K, Ohta E, Nakamura Y, Takamura M, Nozato N, Akashi K, Kanegae T, Ogura Y, Kohchi T, Ohyama K (1992) Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome. J Mol Biol 223:1-7
    • (1992) J Mol Biol , vol.223 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3    Nakamura, Y.4    Takamura, M.5    Nozato, N.6    Akashi, K.7    Kanegae, T.8    Ogura, Y.9    Kohchi, T.10    Ohyama, K.11
  • 35
    • 0030306973 scopus 로고    scopus 로고
    • Analysis of a tRNA gene-like sequence (t-element) with TTA at the anticodon position in the mitochondrial DNA of Dictyostelium discoideum
    • Pi M, Angata K, Ikemura T, Yanagisawa K, Tanaka Y (1996) Analysis of a tRNA gene-like sequence (t-element) with TTA at the anticodon position in the mitochondrial DNA of Dictyostelium discoideum. J Plant Res 109:1-6
    • (1996) J Plant Res , vol.109 , pp. 1-6
    • Pi, M.1    Angata, K.2    Ikemura, T.3    Yanagisawa, K.4    Tanaka, Y.5
  • 36
    • 0017870707 scopus 로고
    • Enzymes for RNA sequence analysis. Reparation and specificity of exoplasmodial ribonucleases I and II Physarum polycephalum
    • Pilly D, Niemeyer A, Schmidt M, Bargetzi JP (1978) Enzymes for RNA sequence analysis. Reparation and specificity of exoplasmodial ribonucleases I and II Physarum polycephalum. J Biol Chem 253:437-445
    • (1978) J Biol Chem , vol.253 , pp. 437-445
    • Pilly, D.1    Niemeyer, A.2    Schmidt, M.3    Bargetzi, J.P.4
  • 39
    • 0017363953 scopus 로고
    • Studies on the sequence of the 3′-terminal region of turnip-yellow-mosaic-virus RNA
    • Silberklang M, Prochiantz A, Haenni AL, RajBhandary UL (1979) Studies on the sequence of the 3′-terminal region of turnip-yellow-mosaic-virus RNA. Eur J Biochem 72:465-478
    • (1979) Eur J Biochem , vol.72 , pp. 465-478
    • Silberklang, M.1    Prochiantz, A.2    Haenni, A.L.3    Rajbhandary, U.L.4
  • 40
    • 0019874668 scopus 로고
    • Primary sequence of wheat mitochondrial 5S ribosomal ribonucleic acid: Functional and evolutionary implications
    • Spencer DF, Bonen L, Gray MW (1981) Primary sequence of wheat mitochondrial 5S ribosomal ribonucleic acid: functional and evolutionary implications. Biochemistry 20:4022-4029
    • (1981) Biochemistry , vol.20 , pp. 4022-4029
    • Spencer, D.F.1    Bonen, L.2    Gray, M.W.3
  • 41
    • 0025506866 scopus 로고
    • ORF 209 of Dictyostelium discoideum mitochondrial DNA has a homologue in chloroplast DNA
    • Tanaka Y, Kuroc K, Angata K, Yanagisawa K (1990) ORF 209 of Dictyostelium discoideum mitochondrial DNA has a homologue in chloroplast DNA. Plant Mol Biol 15:659-660
    • (1990) Plant Mol Biol , vol.15 , pp. 659-660
    • Tanaka, Y.1    Kuroc, K.2    Angata, K.3    Yanagisawa, K.4
  • 42
    • 0025933235 scopus 로고
    • Dramatic size variation of yeast mitochondrial RNAs suggests that RNase P RNAs can be quite small
    • Wise CA, Martin NC (1991) Dramatic size variation of yeast mitochondrial RNAs suggests that RNase P RNAs can be quite small. J Biol Chem 266:19154-19157
    • (1991) J Biol Chem , vol.266 , pp. 19154-19157
    • Wise, C.A.1    Martin, N.C.2
  • 43
    • 0023991422 scopus 로고
    • The NADH-dehydrogenase subunit 5 gene in Oenothera mitochondria contains two introns and is cotranscribed with the 5S rRNA gene
    • Wissinger B, Hiesel R, Schuster W, Brennicke A (1988) The NADH-dehydrogenase subunit 5 gene in Oenothera mitochondria contains two introns and is cotranscribed with the 5S rRNA gene. Mol Gen Genet 212:56-65
    • (1988) Mol Gen Genet , vol.212 , pp. 56-65
    • Wissinger, B.1    Hiesel, R.2    Schuster, W.3    Brennicke, A.4
  • 44
    • 0028330225 scopus 로고
    • Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wicherhamii: Gene content and genome organization
    • Wolff G, Plante I, Lang BF, Kuck U, Burger G (1994) Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wicherhamii: gene content and genome organization. J Mol Biol 237:75-86
    • (1994) J Mol Biol , vol.237 , pp. 75-86
    • Wolff, G.1    Plante, I.2    Lang, B.F.3    Kuck, U.4    Burger, G.5
  • 45
    • 0024517568 scopus 로고
    • Purification and characterization of two serine isoacceptor tRNA from bovine mitochondrial by using a hybridization assay method
    • Yokogawa K, Kumuzawa Y, Miura K, Watanabe K (1989) Purification and characterization of two serine isoacceptor tRNA from bovine mitochondrial by using a hybridization assay method. Nucleic Acids Res 17:2623-2638
    • (1989) Nucleic Acids Res , vol.17 , pp. 2623-2638
    • Yokogawa, K.1    Kumuzawa, Y.2    Miura, K.3    Watanabe, K.4
  • 47
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zucker M (1989) On finding all suboptimal foldings of an RNA molecule. Science 244:48-52
    • (1989) Science , vol.244 , pp. 48-52
    • Zucker, M.1


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