Genotyping and characterization of the geographical distribution of tick-borne encephalitis virus variants with a set of molecular probes

Journal of Medical Virology

Volumn 82, Issue 6, 2010, Pages 965-976

  Demina, T V ^a   Dzhioev, Yu P ^a   Verkhozina, M M ^a   Kozlova, I V ^a   Tkachev, S E ^b   Plyusnin, A ^c   Doroshchenko, E K ^a   Lisak, O V ^a   Zlobin, V I ^d,e  

^a SB RAMS   (Russian Federation)

^b INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^c UNIVERSITY OF HELSINKI   (Finland)

^d INSTITUTE OF BIOMEDICAL CHEMISTRY   (Russian Federation)

^e IRKUTSK STATE MEDICAL UNIVERSITY   (Russian Federation)

Author keywords

Deoxyoligonucleotide probes; Genetic variability; Molecular hybridization; TBEV genotypes

Indexed keywords

OLIGODEOXYNUCLEOTIDE;

ARTICLE; CONTROLLED STUDY; EUROPE; FAR EAST; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; MOLECULAR HYBRIDIZATION; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RUSSIAN FEDERATION; SEQUENCE ANALYSIS; TICK BORNE ENCEPHALITIS FLAVIVIRUS; VIRAL GENETICS;

ENCEPHALITIS VIRUSES, TICK-BORNE; GENOTYPE; HUMANS; MOLECULAR PROBES; NUCLEIC ACID HYBRIDIZATION; POLYMORPHISM, GENETIC; RNA, VIRAL; RUSSIA; VIROLOGY;

TICK-BORNE ENCEPHALITIS VIRUS;

EID: 77953491264     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21765     Document Type: Article

References (34)

1. Demina TV, Dzhioev Yu P, Verkhozina MM, Kozlova IV, Doroshenko EK, Lisak OV, Protasova HG, Zlobin VI. 2007. Investigation of tick-borne encephalitis virus with genome probing. Bull ESSC SB RAMS 3:94-98 (Russian).
2. Ecker M, Allison SL, Meixner T, Heinz FX. 1999. Sequence analysis and genetic classification of TBEV from Europe and Asia. J Gen Virol 80:179-185.
3. Gao GF, Hussain MH, Reid HW, Gould EA. 1993. Classification of a new member of the TBE flavivirus subgroup by its immunological, pathogenetic and molecular characteristics: Identification of subgroup-specific pentapeptides. Virus Res 30:129-144.
4. Gorin OZ, Mungalova NP, Leonov VA, Sozanskiy BE, Zharskaya SL, Arbatskaya EV, Trukhina AG, Kovsharov AF. 1992. Situation on tick-borne encephalitis at the west of Chita region. In: Zlobin VI, editor. Ethiology, epidemiology and infectious diseases diagnostics of Eastern Siberia: Collection of scientific articles. Irkutsk: IEM ESD SB RAMS. pp 44-53 (Russian).
5. Grard G, Moureau G, Charrel RN, Lemasson JJ, Gonzalez JP, Gallian P, Gritsun TS, Holmes EC, Gould EA, de Lamballerie X. 2007. Genetic characterization of tick-borne flaviviruses: New insights into evolution, pathogenetic determinants and taxonomy. Virology 361:80-92.
6. Hayasaka D, Suzuki Y, Kariva H, Ivanov L, Volkov V, Demenev V, Mizutani T, Gojobori T, Takashima I. 1999. Phylogenetic and virulence analysis of tick-borne encephalitis viruses from Japan and far-eastern Russia. J Gen Virol 80:3127-3135.
7. Hayasaka D, Ivanov L, Leonova GN, Goto A, Yoshii K, Mizutani T, Kariwa H, Takashima I. 2001. Distribution and characterization of tick-borne encephalitis viruses from Siberia and far-eastern Asia. J Gen Virol 82:1319-1328. (Pubitemid 32519761)
8. Heinz FX, Collett MS, Purcell RH, Gould EA, Howard CR, Houghton M, Moormann RJM, Rice CM, Thiel HJ. 2000. Family Flaviviridae. In: Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, McGeoch DJ, Maniloff J, Mayo MA, Pringle CR, Wickner RB, editors. Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. San Diego: Academic Press. pp 858-878.
9. Herrington CS, McGee JOD, editors. 1992. Diagnostic molecular pathology: A practical approach. Oxford, New York, Tokyo: IRL Press at Oxford University Press.
10. Innis MA, Gelfand DH. 1990. Optimization of PCRs. In: Innis MA, Gelf DH, Sninsky JJ, White TJ, editors. PCR protocols: A guide to methods and applications. San Diego: Academic Press. pp 3-12.
11. Karan' LS, Braslavskaya SI, Myazin AE. 2007a. Development of detection methods and genotyping of TBE virus in terms of amplification technologies. Vopr Virusol l6:17-22 (Russian).
12. Karan' LS, Malenko GV, Bochkova NG, Levina LS, Pivanova GP, Colyasnikova NM, Gamova EG, Trukhina AG, Zlobin VI, Verkhozina MM, Kozlova IV, Dzhioev YuP, Demina TV, Pogodina VV. 2007b. Application of molecular genetic methodic for examination of structure of strains of TBE virus. Bull SBRAMS4:34-40 (Russian).
13. Khasnatinov MA, Danchinova GA, Unursaikhan U, Tyngalag KH, Tserennorov D, Undraa B, Baigalmaa B, Abmed D, Mironova LV, Otgonbaatar D. 2009. Characterization of tick-borne encephalitis virus that caused the lethal meningoencephalitis human in Mongolia. In: Otgonbaatar D, Burmaa B, editors. Zoonotic infectious diseases and tourism (reports). Inter. Conference., Ulaanbaatar, pp 88-93.
14. Lohov MG, Blinnikova IA. 1986. Structural-functional characteristics of tick-borne encephalitis pestholes in Bichur region of Buryatiya Republic. In: Rybalko MA, editor. Annual of scientific articles. Irkutsk: Medical Institute. pp 44-52.
15. Mahy BWJ, editor. 1985. Virology: A practical approach. Oxford, Washington, DC: IRL Press.
16. Pletnev AG, Yamshikov VF, Blinov VM. 1990. Nucleotide sequence of the genome and complete amino acid sequence of the polyprotein of tick-borne encephalitis virus. Virology 174:250-263.
17. Pogodina VV, Bochkova NG, Levina LS, Zhezmer VYu, Meerova RA. 1981. Immunological and etiological aspects of a study of the Aina/1448 serotype of the tick-borne encephalitis virus. Vopr Virusol 6:735-741 (Russian).
18. Pogodina VV, Bochkova NG, Zlobin VI, Frolova MP, Drokin DA, Levina LS, Dzhioev YuP. 1993.Genetic characteristic of Vergina's serotype of TBEV, and its pathology features. Vopr Virusol 14:158-163 (Russian).
19. Pogodina VV, Bochkova LS, Levina LS, Frolova TV, Trukhina AG, Frolova MP, Malenko GV. 2002. Complex characteristics of Siberian subtype of tick-borne encephalitis virus. In: Leonova GN, Somova-Isachkova LM, editors. Tick-borne encephalitis. Vladivostok: SUO (State Unitary Organization) "Primorskiy poligraphkombinat". pp 72-87 (Russian).
20. Pogodina VV, Bochkova LS, Karan LS, Frolova TV, Levina LS, Malenko GV, Platonov AE. 2004. Monitoring of tick-borne encephalitis virus population in European and Asian regions of Russia. Practical aspects of the problem. Biological Drugs 2:7-13 (Russian).
21. Shamanin VA, Pletnev AG, Rubin SG, Zlobin VI. 1990. Differentiation of strains of tick-borne encephalitis virus by means of RNA-DNA hybridization. J Gen Virol 71:1505-1515.
22. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
23. Trukhina AG, Chipanin VI, Vasenin AA, Voronko IV, Arbatskaya EV. 1988. Ecology peculiarities of combined pestholes of two serotypes of tick-borne encephalitis virus in Eastern Siberia deposit. (All-union Scientific-Research Institution of Medical and Medical-Technical Information), 16114 (Russian). 16pp.
24. Van de Peer Y, De Wachter R. 1994. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10:569-570.
25. Verkhozina MM, Zlobin VV, Kozlova IV, Belikov SI, Demina TV, Butina TV, Dzhioev YuP, Adel'shin RV, Gazo M, Mamaev LV. 2002. Molecular-epidemiology characterization of tick-borne encephalitis virus regional population in Eastern Siberia. Bull ESSC SB RAMS 2:46-49 (Russian).
26. Zlobin VI, Lvov DK. 2008. Tick-borne encephalitis. In: Lvov DK, editor. Medical virology: Manual. Moscow: (Medical Informational Agency). pp 548-552 (Russian).
27. Zlobin VI, Drokin DA, Mansurov PG, Kalmin OB, Iakimenko VV. 1991. The typing of tick-borne encephalitis virus strains by the soluble antigen. Vopr Virusol 36:24-27 (Russian).
28. Zlobin VI, Shamanin VA, Pletnev AG, Drokin DA, Dzhioev YuP, Voronko IV, Mel'nikova OV, Gusarova NA. 1992. The specific reactivity of cDNA- and deoxyoligonucleotide probes, complementary to the tick-borne encephalitis virus genome, with the RNA of strains of different geographical origins. Vopr Virusol 5-6:248-252 (Russian).
29. Zlobin VI, Mamaev LV, Dzhioev YuP, Kozlova IV, Verkhozina MM. 1996.Molecular biological data confirmthe genetic independence of East Siberian subtype of TBE virus (prototype strain Aina/1448). In: Abstract Book of International scientific conference "Tick-borne viral, rickettsial and bacterial infections." Irkutsk: IEM ESSC SB RAMS. pp 58-59.
30. Zlobin VI, Demina TV, Belikov SI, Butina TV, Gorin OZ, Adel'shin RV, Grachev MA. 2001a. Genetic typing of TBEV strains in terms of homology analysis of an envelope protein's gene fragment. Vopr Virusol 1:17-22 (Russian).
31. Zlobin VI, Demina TV, Mamaev LV, Butina TV, Belikov SI, Gorin OZ, Dzhioev YuP, Verkhozina MM, Kozlova IV, Voronko IV, Adel'shin RV, Grachev MA. 2001b. Analysis of genetic variability of TBEV strains on the primary structure of a cover protein's gene fragment. Vopr Virusol 1:12-16 (Russian).
32. Zlobin VI, Gazo M, Belikov SI, Dzhioev YuP, Demina TV, Verkhozina MM, Kozlova IV, Adel'shin RV, Doroshenko EK. 2001c. Molecular probes for genetic typing of tick-borne encephalitis virus. Vopr Virusol 4:43-47 (Russian).
33. Zlobin VI, Borisov VA, Verkhozina MM, Malov IV, Kholmogorova GN. 2002. TBE in Eastern Siberia. Irkutsk: RPD ESSC SB RAMS (Russian).
34. Zlobin VI, Belikov SI, Dzhioev YuP, Demina TV, Kozlova IV. 2003. Molecular-epidemiology characterization of tick-borne encephalitis virus regional population in Eastern Siberia. Irkutsk: EPD ESSC SB RAMS (Russian).