Isolation and characterization of non-Frankia actinobacteria from root nodules of alnus glutinosa, casuarina glauca and elaeagnus angustifolia

Symbiosis

Volumn 50, Issue 1-2, 2010, Pages 51-57

  Ghodhbane Gtari, Faten ^a   Essoussi, Imene ^a   Chattaoui, Mayssa ^a   Chouaia, Bessem ^b   Jaouani, Atef ^a   Daffonchio, Daniele ^b   Boudabous, Abdellatif ^a   Gtari, Maher ^a  

^a Campus Universitaire   (Tunisia)

^b UNIVERSITY OF MILAN   (Italy)

Author keywords

16S rDNA; Actinorhizal symbioses; Micromonospora; Nocardia; PGPR; Streptomyces

Indexed keywords

ACTINORHIZA; BACTERIUM; DECIDUOUS TREE; GENETIC ANALYSIS; HOST PLANT; HYDROLYSIS; LEGUME; NODULATION; NUCLEIC ACID; PHOSPHATE; SHRUB; SOIL NITROGEN; SOLUBILIZATION;

ACTINOBACTERIA; ALNUS; ALNUS GLUTINOSA; BACTERIA (MICROORGANISMS); CASUARINA GLAUCA; ELAEAGNUS ANGUSTIFOLIA; FRANKIA; MICROMONOSPORA; NOCARDIA; STREPTOMYCES;

EID: 77953477742     PISSN: 03345114     EISSN: None     Source Type: Journal    
DOI: 10.1007/s13199-009-0029-7     Document Type: Conference Paper

References (48)

1. Alexander DB, Zuberer DA (1991) Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria. Biol Fertil Soils 12:39-45
2. Bakker AW, Schippers B (1987) Microbial Cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomo-nas spp mediated plant growth stimulation. Soil Biol Biochem 19:451-457
3. Barbieri P, Zanelli T, Galli E, Zanetti G (1986) Wheat inoculation with Azospirillum brasilense Sp6 and some mutants altered nitrogen fixation and indole-3-acetic acid production. FEMS Microbiol Lett 36:87-90
4. Barea J-M, Pozo MJ, Azcón R, Azcón-Aguilar C (2005) Microbial co-operation in the rhizosphere. J Exp Bot 56:1761-1778
5. Benson DR, Silvester WB (1993) Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Microbiol Rev 57:293-319
6. Berg RH, Liu L, Dawson JO, Savka MA, Farrand SK (1992) Induction of pseudoactinorhizae by the plant pathogen Agro-bacterium rhizogenes. Plant Physiol 98:777-779
7. Callaham D, Del Tredici P, Torrey JG (1978) Isolation and cultivation in vitro of the actinomycete causing root nodulation in Comptonia. Science 199:899-902
8. Capellano A, Dequatre B, Valla G, Moiroud A (1987) Root-nodule formation by Penicillium sp. on Alnus glutinosa and Alnus incana. Plant Soil 104:45-51
9. Chernin L, Ismailov Z, Haran S, Chet I (1995) Chitinolytic Enter-obacter agglomerans antagonistic to fungal plant pathogens. Appl Environ Microbiol 61:1720-1726
10. Diem HG, Dommergues YR (1983) The isolation of Frankia from nodules of Casuarina. Can J Bot 61:2822-2825
11. Diem HG, Gauthier D, Dommergues YR (1982) Extranodular growth of Frankia on Casuarina equisetifolia. FEMS Microbiol Lett 15:181-184
12. Errakhi R, Bouteau F, Lebrihi A, Barakate M (2007) Evidences of biological control capacities of Streptomyces spp. against Sclero-tium rolfsii responsible for damping-off disease in sugar beet (Beta vulgaris L.). World J Microbiol Biotechnol 23:1503-1509
13. Felsentein J (1985) Confidence limits on phylogeny: an approach using the bootstrap. Evolution 39:783-791
14. Friedlender M, Inbar J, Chet I (1993) Biological control of soilborne plant pathogens by a β-1, 3 glucanase-producing Pseudomonas cepacia. Soil Biol Biochem 25:1211-1221
15. Ghose TK (1987) Measurement of cellulase activities. Pure Appl Chem 59:257-268
16. Gordon AS, Weber RP (1951) Colorimetric estimation of indole acetic acid. Plant Physiol 26:192-195
17. Gtari M, Brusetti L, Gharbi S, Diego M, Boudabous A, Daffonchio D (2004) Isolation of Elaeagnus-compatible Frankia from soils collected in Tunisia. FEMS Microbiol Lett 234:349-355
18. Gtari M, Brusetti L, Hassen A, Mora D, Daffonchio D, Boudabous A (2007) Genetic diversity among Elaeagnus compatible Frankia strains and sympatric related nitrogen fixing actinobacteria revealed by nifH sequence analysis. Soil Biol Biochem 39:372-377
19. Hamdali H, Bouizgarne B, Hafidi M, Lebrihi A, Virolle MJ, Ouhdouch Y (2008) Screening for rock phosphate-solubilizing Actinomy-cetes from Moroccan phosphate mines. Appl Soil Ecol 38:12-19
20. Jack RW, Tagg JR, Ray B (1995) Bacteriocins of gram-positive bacteria. Microbiol Rev 59:171-200
21. Kannenberg EL, Brewin NJ (1994) Host-plant invasion by Rhizobium: the role of cell-surface components. Trends Microbiol 2:277-283
22. Kuhad RC, Kothamasi DM, Tripathi KK, Singh A (2004) Diversity and functions of soils microflora in development of plants. In: Varma A, Abbot L, Werner D, Hampp R (eds) Plant surface microbiology. Springer, New York, pp 71-98
23. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
24. Lorck H (1948) Production of hydrocyanic acid by bacteria. Physiol Plant 1:142-146
25. Martinez-Noel GMA, Madrid EA, Bottini R, Lamattina L (2001) Indole acetic acid attenuates disease severity in potato-Phytoph-thora infestans interaction and inhibits the pathogen growth in vitro. Plant Physiol Biochem 39:815-823
26. Matthijs S, Tehrani KA, Laus G, Jackson RW, Cooper RM, Cornelis P (2007) Thioquinolobactin, a Pseudomonas siderophore with antifungal and anti-Pythium activity. Environ Microbiol 9:425-434
27. Nazaret S, Simonet P, Normand P, Bardin R (1989) Genetic diversity among Frankia isolated from Casuarina nodules. Plant Soil 118:241-247
28. Niner BM, Brandt JP, Villegas MC, Marshall CR, Hirsch AM, Valdes M (1996) Analysis of partial sequences of genes coding for 16S rRNA of actinomycetes isolated from Casuarina equisetifolia nodules in Mexico. Appl Environ Microbiol 62:3034-3036
29. Norovsuren ZH, Zenova GM, Mosina LV (2005) Actinomycetes in the rhizosphere of semidesert Soils of Mongolia. Euras Soil Sc 40:415-418
30. Ouzari H, Khsairi A, Raddadi N, Jaoua L, Hassen A, Zarrouk M, Daffonchio D, Boudabous A (2008) Diversity of auxin-producing bacteria associated to Pseudomonas savastanoi-induced olive knots. J Basic Microbiol 48:370-377
31. Patten CL, Glick BR (2002) Role of Pseudomonas putida indole acetic acid in development of host plant root system. Appl Environ Microbiol 68:3795-3801
32. Ramirez-Saad H, Janse JD, Akkermans ADL (1998) Root nodules of Ceanothus caeruleus contain both the N2-fixing Frankia endophyte and a phylogenetically related Nod-/Fix-actinomy-cete. Can J Microbiol 44:140-148
33. Rodríguez H, Fraga R (1999) Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol Adv 17:319-339
34. Saitou RR, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 44:406-425
35. Sambrook J, Fritsh EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press
36. Sequerra J, Capellano A, Faure-Raynard M, Moiround A (1994) Root hair infection process and myconodule formation on Alnus incana by Penicillium nodositatum. Can J Bot 72:955-962
37. Solans M (2007) Discaria trinervis-Frankia symbiosis promotion by saprophytic actinomycetes. J Basic Microbiol 47:243-250
38. Solans M, Vobis G (2003) Actinomycetes saprophíticos asociados a la rizósfera de Discaria trinervis. Ecol Aust 13:97-107 (Pubitemid 40578460)
39. Taechowisan T, Peberdy JF, Lumyong S (2004) PCR cloning and heterologous expression of chitinase gene of endophytic Streptomy-ces aureofaciens CMUAc130. J Gen Appl Microbiol 50:177-182
40. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
41. Trujillo ME, Kroppenstedt RE, Schumann P, Carro L, Martinez-Molina E (2006) Micromonospora coriariae sp. nov., isolated from root nodules of Coriaria myrtifolia. Int J Syst Evol Microbiol 56:2381-2385
42. Trujillo ME, Kroppenstedt RE, Fernandez-Molinero C, Schumann P, Martinez-Molina E (2007) Micromonospora lupine sp.nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius. Int J Syst Evol Microbiol 57:2799-2804
43. Valdés M, Cayetano A, Leyva MA, Camacho AD (2004) Promoción del crecimiento de Casuarina equisetifolia (L.) por diferentes microorganismos simbiontes. Terra 22:207-215
44. Valdés M, Pérez NM, de los Santo PE, Mellado JC, Cabrielas JJP, Normand P, Hirsh M (2004) Non-Frankia Actinomycetes isolated from surface sterilized roots of Casuarina equisetifolia fix nitrogen. Appl Environ Microbiol 71:460-466
45. Valdés D, Huss-Danell K, Lavire C, Normand P, Wall L (2006) Further characterization of new symbiotic nitrogen fixing non-Frankia actiomycetes isolated from nodules of Alnus acuminata. The 14th International Meeting on Frankia and Actinorhizal Plants. Department of Plant Physiology, UPSC, Umea University, Umea, Sweden
46. Van Rhijn P, Vanderleyden J (1995) The Rhizobium-plant symbiosis. Microbiol Rev 59:124-142
47. Wolters DJ, van Dijk C, Akkermans A, Woldendorp JW (1999) Ineffective Frankia and host resistance in natural populations of Alnus glutinosa (L.) Gaertn. Acta Oecol 20:71-79
48. Xiao K, Samac DA, Kinkel LL (2002) Biological control of Phytophthora root rots on alfalfa and soybean with Streptomyces. Biol Control 23:285-295