Tistlia consotensis gen. nov., sp. nov., an aerobic, chemoheterotrophic, free-living, nitrogen-fixing alphaproteobacterium, isolated from a Colombian saline spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 6, 2010, Pages 1437-1443

  Diaz Cardenas C ^a   Patel, B K C ^b   Baena, S ^a  

^a PONTIFICIA UNIVERSIDAD JAVERIANA   (Colombia)

^b GRIFFITH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CHLOROPHYLL; FATTY ACID; NITROGEN; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE;

AEROBIC BACTERIUM; ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOHETEROTROPH; CHEMOTAXONOMY; COLOMBIA; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; MESOPHILIC BACTERIUM; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RHODOSPIRILLACEAE; SPRING; THALASSOBACULUM; TISTLIA CONSOTENSIS;

ALPHAPROTEOBACTERIA; COLOMBIA; DNA, BACTERIAL; GENE AMPLIFICATION; GENES, BACTERIAL; HOT SPRINGS; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; NITROGEN FIXATION; POLYMERASE CHAIN REACTION;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; RHODOSPIRILLACEAE;

EID: 77953342526     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.010926-0     Document Type: Article

References (42)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Baena, S., Fardeau, M.-L., Labat, M., Ollivier, B., Garcia, J.-L. & Patel, B. K. C. (1998). Aminobacterium colombiense gen. nov., sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. Anaerobe 4, 241-250.
3. Baldani, V. L. D. & Döbereiner, J. (1980). Host-plant specificity in the infection of cereals with Azospirillum spp. Soil Biol Biochem 12, 433-439.
4. Coenye, T., Goris, J., Spilker, T., Vandamme, P. & Lipuma, J. J. (2002). Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov. J Clin Microbiol 40, 2062-2069.
5. Diallo, M. D., Willems, A., Vloemans, N., Cousin, S., Vandekerckhove, T. T., de Lajudie, P., Neyra, M., Vyverman, W., Gillis, M. & Van der Gucht, K. (2004). Polymerase chain reaction denaturing gradient gel electrophoresis analysis of the N2-fixing bacterial diversity in soil under Acacia tortilis ssp. Raddiana and Balanites aegyptiaca in the dryland part of Senegal. Environ Microbiol 6, 400-415.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Guyoneaud, R., Mouné, S., Eatock, C., Bothorel, V., Hirschler-Réa, A., Willison, J., Duran, R., Liesack, W., Herbert, R. & other authors (2002). Characterization of three spiral-shaped purple nonsulfur bacteria isolated from coastal lagoon sediments, saline sulfur springs, and microbial mats: emended description of the genus Roseospira and description of Roseospira marina sp. nov., Roseospira navarrensis sp. nov., and Roseospira thiosulfatophila sp. nov. Arch Microbiol 178, 315-324.
8. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
9. Imhoff, J. F., Petri, R. & Süling, J. (1998). Reclassification of species of the spiral-shaped phototrophic purple non-sulfur bacteria of the α- Proteobacteria: description of the new genera Phaeospirillum gen. nov., Rhodovibrio gen. nov., Rhodothalassium gen. nov. and Roseospira gen. nov. as well as transfer of Rhodospirillum fulvum to Phaeospirillum fulvum comb. nov., of Rhodospirillum molischianum to Phaeospirillum molischianum comb. nov., of Rhodospirillum salinarum to Rhodovibrio salinarum comb. nov., of Rhodospirillum sodomense to Rhodovibrio sodomensis comb. nov., of Rhodospirillum salexigens to Rhodothalassium salexigens comb. nov. and of Rhodospirillum mediosalinum to Roseospira mediosalina comb. nov. Int J Syst Bacteriol 48, 793-798.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
11. Kawasaki, H., Hoshino, Y., Kuraishi, Y. & Yamasato, K. (1992). Rhodocista centenaria gen. nov., sp. nov., a cyst-forming anoxygenic photosynthetic bacterium and its phylogenetic position in the Proteobacteria alpha group. J Gen Appl Microbiol 38, 541-551. (Pubitemid 23153604)
12. Lópéz-Lópéz, A., Pujalte, M. J., Benlloch, S., Mata-Roig, M., Rosselló-Mora, R., Garay, E. & Rodríguez-Valera, F. (2002). Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the α-Proteobacteria. Int J Syst Evol Microbiol 52, 1277-1283.
13. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
14. Maszenan, A. M., Seviour, R. J., Patel, B. K. C., Janssen, P. H. & Wanner, J. (2005). Defluvicoccus vanus gen. nov., sp. nov., a novel Gram-negative coccus/coccobacillus in the 'Alphaproteobacteria' from activated sludge. Int J Syst Evol Microbiol 55, 2105-2111.
15. Ogg, C. D. & Patel, B. K. C. (2009). Caloramator australicus sp. nov., a thermophilic anaerobic bacterium from the Great Artesian Basil of Australia. Int J Syst Evol Microbiol 59, 95-101.
16. Patel, B. K. C., Morgan, H. W. & Daniel, R. M. (1985). Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 141, 63-69.
17. Pfennig, N. & Trüper, H. G. (1992). The family Chromatiaceae. In The Prokaryotes, pp. 320-322. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. Berlin, Heidelberg, New York: Springer.
18. Pfennig, N., Lünsdorf, H., Süling, J. & Imhoff, J. F. (1997). Rhodospira trueperi gen. nov. and spec. nov., a new phototrophic proteobacterium of the alpha-group. Arch Microbiol 168, 39-45.
19. Poly, F., Monrozier, L. J. & Bally, R. (2001). Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152, 95-103.
20. Redburn, A. C. & Patel, B. K. C. (1993). Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain reaction-amplified 16S rRNA-specific DNA. FEMS Microbiol Lett 113, 81-86.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sakane, T. & Yokota, A. (1994). Chemotaxonomic investigation of heterotrophic, aerobic and microaerophilic spirilla, the genera Aquaspirillum, Magnetospirillum and Oceanospirillum. Syst Appl Microbiol 17, 128-134. (Pubitemid 24193431)
23. Schleifer, K. H., Schüler, D., Spring, S., Weizenegger, M., Amann, R., Ludwig, W. & Köhler, M. (1991). The genus Magnetospirillum gen. nov. description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. Syst Appl Microbiol 14, 379-385.
24. Shi, B. H., Arunpairojana, V., Palakawong, S. & Yokota, A. (2002). Tistrella mobilis gen. nov., sp. nov., a novel polyhydroxyalkanoateproducing bacterium belonging to α-Proteobacteria. J Gen Appl Microbiol 48, 335-343.
25. Simonet, P., Grojean, M. C., Misra, A. K., Nazaret, S., Cournoyer, B. & Normand, P. (1991). Frankia genus-specific characterization by polymerase chain reaction. Appl Environ Microbiol 57, 3278-3286.
26. Sizova, M. V., Panikov, N. S., Spiridonova, E. M., Slobodova, N. V. & Tourova, T. P. (2007). Novel facultative anaerobic acidotolerant Telmatospirillum siberiense gen. nov., sp. nov. isolated from mesotrophic fen. Syst Appl Microbiol 30, 213-220.
27. Skerman, V. B. D., Sly, L. I. & Williamson, M. L. (1983). Conglomeromonas largomobilis gen. nov., sp. nov., a sodium-sensitive, mixed-flagellated organism from fresh waters. Int J Syst Bacteriol 33, 300-308.
28. Sly, L. I. & Stackebrandt, E. (1999). Description of Skermanella parooensis gen. nov., sp. nov. to accommodate Conglomeromonas largomobilis subsp. parooensis following the transfer of Conglomeromonas largomobilis subsp. largomobilis to the genus Azospirillum. Int J Syst Bacteriol 49, 541-544. (Pubitemid 129755054)
29. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
30. Spanevello, M. D., Yamamoto, H. & Patel, B. K. C. (2002). Thermaerobacter subterraneus sp. nov., a novel aerobic bacterium from the Great Artesian Basin of Australia, and emendation of the genus Thermaerobacter. Int J Syst Evol Microbiol 52, 795-800.
31. Tarrand, J. J., Krieg, N. R. & Döbereiner, J. (1978). A taxonomic study of the Spirillum lipoferum group, with description of a new genus, Azospirillum gen. nov., and two species, Azospirillum lipoferum (Beijerinck) comb. nov., and Azospirillum brasilense sp. nov. Can J Microbiol 24, 967-980.
32. Tistl, M. (2004). Sal, Cobre y Oro en el Consotá. In Cambios Ambientales en Perspectiva Histórica. Ecorregión del Eje Cafetero, pp. 41-53. Edited by C. López & M. Cano. Pereira, Colombia: Universidad Tecnológica de Pereira, Programa Ambiental GTZ (in Spanish).
33. Urios, L., Michotey, V., Intertaglia, L., Lesongeur, F. & Lebaron, P. (2008). Nisaea denitrificans gen. nov., sp. nov. and Nisaea nitritireducens sp. nov., two novel members of the class Alphaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol 58, 2336-2341.
34. Van de Peer, Y., Jansen, J., De Rijk, P. & De Wachter, P. (1997). Database on the structure of small ribosomal subunit RNA. Nucleic Acids Res 25, 111-116. (Pubitemid 27303162)
35. Witty, J. F. & Minchin, F. R. (1988). Measurement of nitrogen fixation by the acetylene reduction assay; myths and mysteries. In Nitrogen Fixation by Legumes in Mediterranean Agriculture, pp. 331-343. Edited by D. P. Beck & L. A. Materon. Syria: Aleppo, ICARDA.
36. Woo, T. H. S., Patel, B. K. C., Smythe, L. D., Symonds, M. L., Norris, M. A. & Dohnt, M. F. (1997). Comparison of two PCR methods for rapid identification of Leptospira genospecies interrogans. FEMS Microbiol Lett 155, 169-177.
37. Xie, C.-H. & Yokota, A. (2005a). Azospirillum oryzae sp. nov., a nitrogen-fixing bacterium isolated from the roots of the rice plant Oryza sativa. Int J Syst Evol Microbiol 55, 1435-1438.
38. Xie, C.-H. & Yokota, A. (2005b). Pleomorphomonas oryzae gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from paddy soil of Oryza sativa. Int J Syst Evol Microbiol 55, 1233-1237.
39. Yoon, J. H., Kang, S. J., Park, S. & Oh, T. K. (2007). Caenispirillum bisanense gen. nov., sp. nov., isolated from sludge of a dye works. Int J Syst Evol Microbiol 57, 1217-1221.
40. Yurkov, V. & van Gemerden, H. (1993). Abundance and salt tolerance of obligately aerobic, phototrophic bacteria in a marine microbial mat. Neth J Sea Res 31, 57-62.
41. Zeikus, J. G., Hegge, P. W. & Anderson, M. A. (1979). Thermoanaerobium brockii gen. nov. and sp. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 122, 41-48.
42. Zhang, G. I., Hwang, C. Y. & Cho, B. C. (2008). Thalassobaculum litoreum gen. nov., sp. nov., a member of the family Rhodospirillaceae isolated from coastal seawater. Int J Syst Evol Microbiol 58, 479-485.