Spatiotemporal variation of bacterial community composition and possible controlling factors in tropical shallow lagoons

Microbial Ecology

Volumn 59, Issue 4, 2010, Pages 819-829

  Laque, Thaís ^a   Farjalla, Vinicius F ^a   Rosado, Alexandre S ^a   Esteves, Francisco A ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPHYLL; CHLOROPHYLL A; NITRATE; PHOSPHORUS; SEA WATER;

ARTICLE; BACTERIUM; BRAZIL; GEOGRAPHY; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; SALINITY; TIME; TROPIC CLIMATE;

BACTERIA; BRAZIL; CHLOROPHYLL; GEOGRAPHY; NITRATES; PHOSPHORUS; SALINITY; SEAWATER; TIME FACTORS; TROPICAL CLIMATE; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS);

EID: 77953326727     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9642-5     Document Type: Article

References (47)

1. Alonso C, Zeder M, Piccini C, Conde D, Pernthaler J (2009) Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon. Environ Microbiol 11: 867-876.
2. Clementino MM, Vieira RP, Cardoso AM, Nascimento APA, Silveira CB, Riva TC, Gonzalez ASM, Paranhos R, Albano RM, Ventosa A, Martins OB (2008) Prokaryotic diversity in one of the largest hypersaline coastal lagoons in the world. Extremophiles 12: 595-604.
3. Colwell RK (2006) EstimateS: statistical estimation of species richness and shared species from samples, Version 8. Persistent URL < purl. oclc. org/estimates>.
4. de Wit R, Bouvier T (2006) 'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say? Environ Microbiol 8: 755-758.
5. del Giorgio PA, Cole JJ (1998) Bacterial growth efficiency in natural aquatic systems. Annu Rev Ecol Syst 29: 503-541.
6. Eiler A, Langenheder S, Bertilsson S, Tranvik LJ (2003) Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol 69: 3701-3709.
7. Esteves FA, Caliman A, Santangelo JM, Guariento RD, Farjalla VF, Bozelli RL (2008) Neotropical coastal lagoons: an appraisal of their biodiversity, functioning, threats and conservation management. Braz J Biol 68: 967-981.
8. Farjalla VF, Faria BM, Esteves FA (2002) The relationship between DOC and planktonic bacteria in tropical coastal lagoons. Arch Hydrobiol 156: 97-119.
9. Farjalla VF, Marinho CC, Faria BM, Amado AM, Esteves FA, Bozelli RL, Giroldo D (2009) Synergy of fresh and accumulated organic matter to bacterial growth. Microb Ecol 57: 657-666.
10. Farjalla VF, Amado AM, Suhett AL, Meirelles-Pereira F (2009) DOC removal paradigms in highly humic aquatic ecosystems. Environ Sci Pollut Res 16: 531-538.
11. Fierer N, Morse JL, Berthrong ST, Bernhardt ES, Jackson RB (2007) Environmental controls on the landscape-scale biogeography of stream bacterial communities. Ecology 88: 2162-2173.
12. Fisher MM, Klug JL, Lauster G, Newton M, Triplett EW (2000) Effects of resources and trophic interactions on freshwater bacterioplankton diversity. Microb Ecol 40: 125-138.
13. Fontes MLS, Abreu PC (2009) Spatiotemporal variation of bacterial assemblages in a shallow subtropical coastal lagoon in Southern Brazil. Microb Ecol 58: 140-152.
14. Gasol JM, Casamayor EO, Joint I, Garde K, Gustavson K, Benlloch S, Diéz B, Schauer M, Massana R, Pedrós-Alió C (2004) Control of heterotrophic prokaryotic abundance and growth rate in hypersaline planktonic environments. Aquat Microb Ecol 34: 193-206.
15. Golterman HL, Clymo RS, Ohnstad MAM (1978) Methods of physical and chemical analysis of fresh water. Blackwell Scientific Publishers, Oxford, p 214.
16. Guixa-Boixereu N, Calderón-Paz JI, Heldal M, Bratbak G, Pedrós-Alió C (1996) Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient. Aquat Microb Ecol 11: 215-227.
17. Hedges JI, Keil RG (1999) Organic geochemical perspectives on estuarine processes: sorption reactions and consequences. Mar Chem 65: 55-65.
18. Hu CM, Muller-Karger FE, Zepp RG (2002) Absorbance, absorption coefficient, and apparent quantum yield: a comment on common ambiguity in the use of these optical concepts. Limnol Oceanogr 47: 1261-1267.
19. Jeppesen E, Søndergaard M, Pedersen AR, Jurgens K, Strzelczak A, Lauridsen TL, Johansson LS (2007) Salinity induced regime shift in shallow brackish lagoons. Ecosystems 10: 47-57.
20. Judd KE, Crump BC, Kling GW (2006) Variation in dissolved organic matter controls bacterial production and community composition. Ecology 87: 2068-2079.
21. Kan J, Suzuki MT, Wang K, Evans SE, Chen F (2007) High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake bay. Appl Environ Microbiol 73: 6776-6789.
22. Kjerfve B, Schettini CAF, Knoppers B, Lessa G, Ferreira HO (1996) Hydrology and salt balance in a large, hypersaline coastal lagoon: Lagoa de Araruama, Brazil. Estuar Coast Shelf Sci 42: 701-725.
23. Koroleff F (1978) Determination of ammonia. In: Grasshoff K, Ehrhardt M, Remling K (eds) Methods of seawater analysis. Verlag Chemie, Republic of Germany, pp 151-157.
24. Lindström ES, Kamst-van Agterveld MP, Zwart G (2005) Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time. Appl Environ Microbiol 71: 8201-8206.
25. Loisel P, Harmand J, Zemb O, Latrille E, Lobry C, Delgenes JP et al (2006) Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity. Environ Microbiol 8: 720-731.
26. Melo S, Bozelli RL, Esteves FA (2007) Temporal and spatial fluctuations of phytoplankton in a tropical coastal lagoon, south-eastern Brazil. Braz J Biol 67: 475-483.
27. Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial-populations by denaturing gradient gel-eletrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16S ribosomal-RNA. Appl Environ Microbiol 59: 695-700.
28. Muyzer G, Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73: 127-141.
29. Nusch EA, Palme G (1975) Biologische methoden für die praxis der gewässeruntersuchung. GWF-Wasser/Abwasser 116: 562-565.
30. Øvreås L, Forney L, Daae FL, Torsvik V (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 63: 3367-3373.
31. Pedrós-Alió C, Calderon-Paz JI, MacLean MH, Medina G, Marrasé C, Gasol JM, Guixa-Boixereu N (2000) The microbial food web along salinity gradients. FEMS Microbiol Ecol 32: 143-155.
32. Pinhassi J, Gomez-Consarnau L, Alonso-Saez L, Sala MM, Vidal M, Pedros-Alio C, Gasol JM (2006) Seasonal changes in bacterioplankton nutrient limitation and their effects on bacterial community composition in the NW Mediterranean Sea. Aquat Microb Ecol 44: 241-252.
33. Ramette A (2007) Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 62: 142-160.
34. Reche I, Pulido-Villena E, Morales-Baquero R, Casamayor EO (2005) Does ecosystem size determine aquatic bacterial richness? Ecology 86: 1715-1722.
35. Santangelo JM, Rocha AM, Bozelli RL, Carneiro LS, Esteves FA (2007) Zooplankton responses to sandbar opening in a tropical eutrophic coastal lagoon. Estuar Coast Shelf Sci 71: 657-668.
36. Stepanauskas R, Farjalla VF, Tranvik LJ, Svensson JM, Esteves FA, Graneli W (2000) Bioavailability and sources of DOC and DON in macrophyte stands of a tropical coastal lake. Hydrobiologia 436: 241-248.
37. Suhett AL, Amado AM, Enrich-Prast A, Esteves F, Farjalla VF (2007) Seasonal changes of DOC photo-oxidation rates in a tropical humic lagoon: the role of rainfall as a major regulator. Can J Fish Aquat Sci 64: 1266-1272.
38. Suzuki MS, Ovalle ARC, Pereira EA (1998) Effects of sand bar openings on some limnological variables in a hypertrophic tropical coastal lagoon of Brazil. Hydrobiologia 368: 111-122.
39. Suzuki M, Figueiredo R, Castro S, Silva C, Pereira E, Silva J, Aragon G (2002) Sand bar opening in a coastal lagoon (Iquipari) in the northern region of Rio de Janeiro State: hydrological and hydrochemical changes. Braz J Biol 62: 51-62.
40. Suzuki MT (1999) Effect of protistan bacterivory on coastal bacterioplankton diversity. Aquat Microb Ecol 20: 261-272.
41. van der Gucht K, Cottenie K, Muylaert K, Vloemans N, Cousin S, Declerck S, Jeppesen E, Conde-Porcuna JM, Schwenk K, Zwart G, Degans H, Vyverman W, De Meester L (2007) The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales. PNAS 104: 20404-20409.
42. Williams WD (1998) Salinity as a determinant of the structure of biological communities in salt lakes. Hydrobiologia 381: 191-201.
43. Williams WD, Boulton AJ, Taaffe RG (1990) Salinity as a determinant of salt lake fauna-a question of scale. Hydrobiologia 197: 257-266.
44. Woodcock S, Curtis TP, Head IM, Lunn M, Sloan WT (2006) Taxa-area relationships for microbes: the unsampled and the unseen. Ecol Lett 9: 805-812.
45. Wu QL, Zwart G, Wu J, Agterveld M, Liu S, Hahn MW (2007) Submersed macrophytes play a key role in structuring bacterioplankton community composition in the large, shallow, subtropical Taihu Lake, China. Environ Microbiol 9: 2765-2774.
46. Yannarell AC, Triplett EW (2005) Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microbiol 71: 227-239.
47. Yu YH, Yan QY, Feng WS (2008) Spatiotemporal heterogeneity of plankton communities in Lake Donghu, China, as revealed by PCR-denaturing gradient gel electrophoresis and its relation to biotic and abiotic factors. FEMS Microbiol Ecol 63: 328-337.