Leifsonia soli sp. nov., a yellow-pigmented actinobacterium isolated from teak rhizosphere soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 6, 2010, Pages 1322-1327

  Madhaiyan, Munusamy ^a   Poonguzhali, Selvaraj ^a   Lee, Jung Sook ^b   Senthilkumar, Murugaiyan ^a   Lee, Keun Chul ^b   Sundaram, Subbiah ^a  

^a TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; LEIFSONIA SOLI TG S240; LEIFSONIA SOLI TG S248; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RHIZOSPHERE; SEQUENCE ANALYSIS; SOIL; STRAIN DIFFERENCE;

ACTINOBACTERIA; CORYNEBACTERIUM; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SUGAR ALCOHOLS; WATER MICROBIOLOGY;

LEIFSONIA; LEIFSONIA AQUATICA; LEIFSONIA NAGANOENSIS; LEIFSONIA POAE; LEIFSONIA SHINSHUENSIS; LEIFSONIA XYLI SUBSP. CYNODONTIS; TECTONA GRANDIS;

EID: 77953312704     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.014373-0     Document Type: Article

References (35)

1. Barac, T., Taghavi, S., Borremans, B., Provoost, A., Oeyen, L., Colpaert, J. V., Vangronsveld, J. & van der Lelie, D. (2004). Engineered endophytic bacteria improve phytoremediation of water solution, volatile, organic pollution. Nat Biotechnol 22, 583-588.
2. Chanprame, S., Todd, J. J. & Widholm, J. M. (1996). Prevention of pink-pigmented methylotrophic bacteria (Methylobacterium mesophilicum) contamination of plant tissue cultures. Plant Cell Rep 16, 222-225.
3. Dastager, S. G., Lee, J.-C., Ju, Y.-J., Park, D.-J. & Kim, C.-J. (2008). Leifsonia bigeumensis sp. nov., isolated from soil on Bigeum Island, Korea. Int J Syst Evol Microbiol 58, 1935-1938.
4. Dastager, S. G., Lee, J.-C., Ju, Y.-J., Park, D.-J. & Kim, C.-J. (2009). Leifsonia kribbensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 59, 18-21.
5. Davis, M. J., Gillaspie, A. G., Jr, Vidaver, A. K. & Harris, R. W. (1984). Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and bermudagrass stunting disease. Int J Syst Bacteriol 34, 107-117.
6. Evtushenko, L. I., Dorofeeva, L. V., Subbotin, S. A., Cole, J. R. & Tiedje, J. M. (2000). Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al., 1984 with two subspecies as Leifsonia xyli (Davis et al., 1984) gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 371-380.
7. Fahey, J. W., Dimock, M. B., Tomasino, S. F., Taylor, J. M. & Carlson, P. S. (1991). Genetically engineered endophytes as biocontrol agents: a case study in industry. In Microbial Ecology of Leaves, pp. 401-411. Edited by J. H. Andrews & S. S. Hirano. New York: Springer.
8. Ghosh, S., Penterman, J. N., Little, R. D., Chavez, R. & Glick, B. R. (2003). Three newly isolated plant growth-promoting bacilli facilitate the seedling growth of canola, Brassica campestris. Plant Physiol Biochem 41, 277-281.
9. Glick, B. R., Jacobson, C. B., Schwarze, M. M. K. & Pasternak, J. J. (1994). 1-Aminocyclopropane-1-carboxylic acid deaminase mutants of the plant growth promoting rhizobacterium Pseudomonas putida GR12-2 do not stimulate canola root elongation. Can J Microbiol 40, 911-915.
10. Hao, D. C., Ge, G. B. & Yang, L. (2008). Bacterial diversity of Taxus rhizosphere: culture-independent and culture-dependent approaches. FEMS Microbiol Lett 284, 204-212.
11. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359-2367.
12. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
13. Lampel, J. S., Canter, G. L., Dimoch, M. B., Kelly, J. L., Anderson, J. J., Uratani, B. B., Foulke, J. S., Jr & Turner, J. T. (1994). Integrative cloning, expression, and stability of the crylA(c) gene from Bacillus thuringiensis subsp. kurstaki in a recombinant strain of Clavibacter xyli subsp. cynodontis. Appl Environ Microbiol 60, 501-508.
14. Leifson, E. (1962). The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum, and Pseudomonas. Int Bull Bacteriol Nomencl Taxon 12, 161-170.
15. Li, J., Ovakim, D. H., Charles, T. C. & Glick, B. R. (2000). An ACC deaminase minus mutant of Enterobacter cloacae UW4 no longer promotes root elongation. Curr Microbiol 41, 101-105. (Pubitemid 30437601)
16. Madhaiyan, M., Poonguzhali, S., Ryu, J.-H. & Sa, T.-M. (2006). Regulation of ethylene levels in canola (Brassica campestris) by 1-aminocyclopropane-1-carboxylate deaminase-containing Methylobacterium fujisawaense. Planta 224, 268-278.
17. Madhaiyan, M., Poonguzhali, S. & Sa, T. M. (2007a). Metal tolerating methylotrophic bacteria reduces nickel and cadmium toxicity and promotes plant growth of tomato (Lycopersicon esculentum L.). Chemosphere 69, 220-228.
18. Madhaiyan, M., Kim, B.-Y., Poonguzhali, S., Kwon, S.-W., Song, M.-H., Ryu, J.-H., Go, S.-J., Koo, B.-S. & Sa, T.-M. (2007b). Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice. Int J Syst Evol Microbiol 57, 326-331.
19. Madhaiyan, M., Poonguzhali, S., Kwon, S. W. & Sa, T. M. (2009). Methylobacterium phyllosphaerae sp. nov., a pink-pigmented facultatively methylotrophic bacterium from rice. Int J Syst Evol Microbiol 59, 22-27.
20. Maltsev, I. I., Kalinovskii, A. I., Zgurskaya, H. I. & Evtushenko, L. I. (1992). Tyvelose in Agromyces cell walls. Syst Appl Microbiol 15, 187-190.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241. (Pubitemid 14058168)
23. Penrose, D. M. & Glick, B. R. (2003). Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiol Plant 118, 10-15.
24. Poonguzhali, S., Madhaiyan, M. & Sa, T. (2006). Cultivation-dependent characterization of rhizobacterial communities from field grown Chinese cabbage Brassica campestris ssp. pekinensis and screening of traits for potential plant growth promotion. Plant Soil 286, 167-180.
25. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
26. Reddy, G. S. N., Prakash, J. S. S., Srinivas, R., Matsumoto, G. I. & Shivaji, S. (2003). Leifsonia rubra sp. nov. and Leifsonia aurea sp. nov., psychrophiles from a pond in Antarctica. Int J Syst Evol Microbiol 53, 977-984.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Sasser, M. (1990). Identification of bacteria through fatty acid analysis. In Methods in Phytobacteriology, pp. 199-204. Edited by Z. Klement, K. Rudolph & D. C. Sands. Budapest: Akademiai Kiado.
29. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
30. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154. (Pubitemid 15101594)
31. Smith, N. R., Gordon, R. E. & Clark, F. E. (1952). Aerobic Spore Forming Bacteria. Agricultural Monograph no. 16. Washington, DC: US Department of Agriculture.
32. Sutcliffe, I. C. & Hutchings, M. I. (2007). Putative lipoproteins identified by bioinformatic genome analysis of Leifsonia xyli ssp. xyli, the causative agent of sugarcane ratoon stunting disease. Mol Plant Biol 8, 121-128.
33. Suzuki, K., Suzuki, M., Sasaki, J., Park, Y. H. & Komagata, K. K. (1999). Leifsonia gen. nov., a genus for 2,4-diaminobutyric acid-containing actinomycetes to accommodate 'Corynebacterium aquaticum' Leifson 1962 and Clavibacter xyli subsp. cynodontis Davis et al. 1984. J Gen Appl Microbiol 45, 253-262.
34. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
35. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.