Leifsonia kribbensis sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 1, 2009, Pages 18-21

  Dastager, Syed G ^a   Lee, Jae Chan ^a   Ju, Yoon Jung ^a   Park, Dong Jin ^a   Kim, Chang Jin ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; BACTERIAL DNA; RIBOSOME DNA;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; GENETIC SIMILARITY; GENOTYPE; GRAM POSITIVE BACTERIUM; KOREA; LEIFSONIA AQUATICA; LEIFSONIA KRIBBENSIS; LEIFSONIA POAE; LEIFSONIA SHINSHUENSIS; LEIFSONIA XYLI CYNODONTIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ALIGNMENT; SOIL; ACTINOMYCETALES; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

LEIFSONIA; LEIFSONIA AQUATICA; LEIFSONIA NAGANOENSIS; LEIFSONIA POAE; LEIFSONIA SHINSHUENSIS; LEIFSONIA XYLI SUBSP. CYNODONTIS;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GENOTYPE; KOREA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 60549100949     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.001925-0     Document Type: Article

References (23)

1. Cowan, S. T. (1974). Cowan and Steel's Manual for the Identification of Medical Bacteria, 2nd edn. London: Cambridge University Press.
2. Davis, M. J., Gillaspie, A. G., Vidaver, A. K. & Harris, R. W. (1984). Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermuda grass stunting disease. Int J Syst Bacteriol 34, 107-117.
3. Evtushenko, L. I., Dorofeeva, L. V., Subbotin, S. A., Cole, J. R. & Tiedje, J. M. (2000). Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 371-380.
4. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
6. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
7. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M. (1998). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Bacteriol 48, 59-68.
8. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
9. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP 18) and a silver loaded ion exchanger as stationery phases. J Liq Chromatogr 5, 2359-2367.
10. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
11. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
12. Moaledji, K. (1986). Comparison of gram-staining and alternate methods, KOH test and aminopeptidase activity in aquatic bacteria: their application to numerical taxonomy. J Microbiol Methods 5, 303-310.
13. Qiu, F., Huang, Y., Sun, L., Zhang, X., Liu, Z. & Song, W. (2007). Leifsonia ginsengi sp. nov., isolated from ginseng root. Int J Syst Evol Microbiol 57, 405-408.
14. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
15. Reddy, G. S. N., Prakash, J. S. S., Srinivas, R., Matsumoto, G. I. & Shivaji, S. (2003). Leifsonia rubra sp. nov. and Leifsonia aurea sp. nov., psychrophiles from a pond in Antarctica. Int J Syst Evol Microbiol 53, 977-984.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
18. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
19. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
20. Smith, N. R., Gordon, R. E. & Clark, F. E. (1952). Aerobic sporeforming bacteria. Agricultural Monograph no. 16. Washington, DC: US Department of Agriculture.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
23. Suzuki, K. I., Suzuki, M., Sasaki, J., Park, Y. H. & Komagata, K. (1999). Leifsonia gen. nov., a genus for 2,4-diaminobutyric acid containing actinomycetes to accommodate "Corynebacterium aquaticum" Leifson 1962 and Clavibacter xyli subsp. cynodontis Davis et al. 1984. J Gen Appl Microbiol 45, 253-262.