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Volumn 38, Issue 2, 2010, Pages 667-671

Regulation of plant gene expression by alternative splicing

Author keywords

Alternative splicing; Arabidopsis; Precursor mRNA; Splicing factor

Indexed keywords

CAP BINDING PROTEIN; MESSENGER RNA PRECURSOR;

EID: 77953263360     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0380667     Document Type: Review
Times cited : (29)

References (45)
  • 1
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black, D.L. (2003) Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 72, 291-336
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 291-336
    • Black, D.L.1
  • 4
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics
    • Maquat, L.E. (2004) Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nat. Rev. Mol. Cell Biol. 5, 89-99
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 89-99
    • Maquat, L.E.1
  • 5
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis, B.P., Green, R.E. and Brenner, S.E. (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl. Acad. Sci. U.S.A. 7, 189-192
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.7 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 6
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan, Q., Shai, O., Lee, L.J., Frey, B.J. and Blencowe, B.J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 40, 1413-1415
    • (2008) Nat. Genet. , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 8
    • 33646484347 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of alternative splicing in plants
    • Wang, B.B. and Brendel, V. (2006) Genome-wide comparative analysis of alternative splicing in plants. Proc. Natl. Acad. Sci. U.S.A. 103, 7175-7180
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 7175-7180
    • Wang, B.B.1    Brendel, V.2
  • 9
    • 33846573830 scopus 로고    scopus 로고
    • Comprehensive analysis of alternative splicing in rice and comparative analysis with Arabidopsis
    • Campbell, M.A., Haas, B.J., Hamilton, J.H., Mount, S.M. and Buell, C.R. (2006) Comprehensive analysis of alternative splicing in rice and comparative analysis with Arabidopsis. BMC Genomics 7, 327-343
    • (2006) BMC Genomics , vol.7 , pp. 327-343
    • Campbell, M.A.1    Haas, B.J.2    Hamilton, J.H.3    Mount, S.M.4    Buell, C.R.5
  • 10
    • 50649109231 scopus 로고    scopus 로고
    • Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
    • Barbazuk, W.B., Fu, Y. and McGinnis, K.M. (2008) Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res. 18, 1381-1392
    • (2008) Genome Res. , vol.18 , pp. 1381-1392
    • Barbazuk, W.B.1    Fu, Y.2    McGinnis, K.M.3
  • 11
    • 34250813107 scopus 로고    scopus 로고
    • Alternative splicing of pre-messenger RNAs in plants in the genomic era
    • Reddy, A.S.N. (2007) Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu. Rev. Plant Biol. 58, 267-294
    • (2007) Annu. Rev. Plant Biol. , vol.58 , pp. 267-294
    • Reddy, A.S.N.1
  • 12
    • 0027260941 scopus 로고
    • CDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: Occurrence of tissue-specific alternative splicing
    • Hirose, T., Sugita, M. and Sugiura, M. (1993) cDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: occurrence of tissue-specific alternative splicing. Nucleic Acids Res. 21, 3981-3987
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3981-3987
    • Hirose, T.1    Sugita, M.2    Sugiura, M.3
  • 13
    • 0037175010 scopus 로고    scopus 로고
    • Identification of a cis element for tissue-specific alternative splicing of chloroplast ascorbate peroxidase pre-mRNA in higher plants
    • Yoshimura, K., Yabuta, Y., Ishikawa, T. and Shigeoka, S. (2002) Identification of a cis element for tissue-specific alternative splicing of chloroplast ascorbate peroxidase pre-mRNA in higher plants. J. Biol. Chem. 277, 40623-40632
    • (2002) J. Biol. Chem. , vol.277 , pp. 40623-40632
    • Yoshimura, K.1    Yabuta, Y.2    Ishikawa, T.3    Shigeoka, S.4
  • 14
    • 58749102066 scopus 로고    scopus 로고
    • Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
    • Schöning, J.C., Streitner, C., Meyer, I.M., Gao, Y. and Staiger, D. (2008) Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res. 36, 6977-6987
    • (2008) Nucleic Acids Res. , vol.36 , pp. 6977-6987
    • Schöning, J.C.1    Streitner, C.2    Meyer, I.M.3    Gao, Y.4    Staiger, D.5
  • 15
    • 0033167289 scopus 로고    scopus 로고
    • Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a singlenucleotide polymorphism
    • Larkin, P.D. and Park, W.D. (1999) Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a singlenucleotide polymorphism. Plant Mol. Biol. 40, 719-727
    • (1999) Plant Mol. Biol. , vol.40 , pp. 719-727
    • Larkin, P.D.1    Park, W.D.2
  • 16
    • 33744951518 scopus 로고    scopus 로고
    • Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat
    • Egawa, C., Kobayashi, F., Ishibashi, M., Nakamura, T., Nakamura, C. and Takumi, S (2006) Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat. Genes Genet. Syst. 81, 77-91
    • (2006) Genes Genet. Syst. , vol.81 , pp. 77-91
    • Egawa, C.1    Kobayashi, F.2    Ishibashi, M.3    Nakamura, T.4    Nakamura, C.5    Takumi, S.6
  • 17
    • 33746597533 scopus 로고    scopus 로고
    • Potent induction of Arabidopsis thaliana flowering by elevated growth temperature
    • Balasubramanian, S., Sureshkumar, S., Lempe, J. and Wiegel, D. (2006) Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. PLoS Genet. 2, e106
    • (2006) PLoS Genet. , vol.2
    • Balasubramanian, S.1    Sureshkumar, S.2    Lempe, J.3    Wiegel, D.4
  • 18
    • 4844222571 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative splicing in Arabidopsis thaliana based on full-length cDNA sequences
    • Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and and Shinozaki, K. (2004) Genome-wide analysis of alternative splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res. 32, 5096-5103
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5096-5103
    • Iida, K.1    Seki, M.2    Sakurai, T.3    Satou, M.4    Akiyama, K.5    Toyoda, T.6    Konagaya, A.7    Shinozaki, K.8
  • 19
    • 42149149278 scopus 로고    scopus 로고
    • Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis
    • Bove, J., Kim, C.Y., Gibson, C.A. and Assmann, S.M. (2008) Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Plant Mol. Biol. 67, 71-88
    • (2008) Plant Mol. Biol. , vol.67 , pp. 71-88
    • Bove, J.1    Kim, C.Y.2    Gibson, C.A.3    Assmann, S.M.4
  • 20
    • 0034652218 scopus 로고    scopus 로고
    • Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance
    • Dinesh-Kumar, S.P and Baker, B.J. (2000) Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance. Proc. Natl. Acad. Sci. U.S.A. 97, 1908-1913
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 1908-1913
    • Dinesh-Kumar, S.P.1    Baker, B.J.2
  • 23
    • 67651122830 scopus 로고    scopus 로고
    • Dynamic behaviour of the eIF4A-III putative core protein of the exon junction complex: Fast relocation to nucleolus and speckles under hypoxia
    • Koroleva, O.A., Calder, G., Pendle, A.F., Kim, S.H., Lewandowska, D., Simpson, C.G., Jones, I.M., Brown, J.W.S. and Shaw, P.J. (2009) Dynamic behaviour of the eIF4A-III putative core protein of the exon junction complex: fast relocation to nucleolus and speckles under hypoxia. Plant Cell 21, 1592-1606
    • (2009) Plant Cell , vol.21 , pp. 1592-1606
    • Koroleva, O.A.1    Calder, G.2    Pendle, A.F.3    Kim, S.H.4    Lewandowska, D.5    Simpson, C.G.6    Jones, I.M.7    Brown, J.W.S.8    Shaw, P.J.9
  • 24
    • 0034256020 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing: The logic of combinatorial control
    • Smith, C.W. and Valcárcel, J. (2000) Alternative pre-mRNA splicing: the logic of combinatorial control. Trends Biochem. Sci. 25, 381-388
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 381-388
    • Smith, C.W.1    Valcárcel, J.2
  • 25
    • 18344364099 scopus 로고    scopus 로고
    • Understanding alternative splicing: Towards a cellular code
    • Matlin, A.J., Clark, F. and Smith, C.W.J. (2005) Understanding alternative splicing: towards a cellular code. Nat. Rev. Mol. Cell Biol. 5, 89-99
    • (2005) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 89-99
    • Matlin, A.J.1    Clark, F.2    Smith, C.W.J.3
  • 26
    • 4344662645 scopus 로고    scopus 로고
    • A plethora of plant serine/arginine-rich proteins: Redundancy or evolution of novel gene functions
    • Kalyna, M. and Barta, A. (2004) A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions. Biochem. Soc. Trans. 32, 561-564
    • (2004) Biochem. Soc. Trans. , vol.32 , pp. 561-564
    • Kalyna, M.1    Barta, A.2
  • 28
    • 0141632822 scopus 로고    scopus 로고
    • Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development
    • Kalyna, M., Lopato, S. and Barta, A. (2003) Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development. Mol. Biol. Cell 14, 3565-3577
    • (2003) Mol. Biol. Cell , vol.14 , pp. 3565-3577
    • Kalyna, M.1    Lopato, S.2    Barta, A.3
  • 29
    • 0033561378 scopus 로고    scopus 로고
    • AtSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes
    • Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R., Krainer, A.R. and Barta, A. (1999) atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes Dev. 13, 987-1001
    • (1999) Genes Dev. , vol.13 , pp. 987-1001
    • Lopato, S.1    Kalyna, M.2    Dorner, S.3    Kobayashi, R.4    Krainer, A.R.5    Barta, A.6
  • 31
    • 33750029727 scopus 로고    scopus 로고
    • Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins
    • Kalyna, M., Lopato, S., Voronin, V. and Barta, A. (2006) Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins. Nucleic Acids Res. 34, 4395-4405
    • (2006) Nucleic Acids Res. , vol.34 , pp. 4395-4405
    • Kalyna, M.1    Lopato, S.2    Voronin, V.3    Barta, A.4
  • 32
    • 67650189015 scopus 로고    scopus 로고
    • Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development
    • Zhang, X.-N. and Mount, S.M. (2009) Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Plant Physiol. 150, 1450-1458
    • (2009) Plant Physiol. , vol.150 , pp. 1450-1458
    • Zhang, X.-N.1    Mount, S.M.2
  • 33
    • 0030753073 scopus 로고    scopus 로고
    • The role of the cap structure in RNA processing and nuclear export
    • Lewis, J.D. and Izaurralde, E. (1997) The role of the cap structure in RNA processing and nuclear export. Eur. J. Biochem. 247, 461-469
    • (1997) Eur. J. Biochem. , vol.247 , pp. 461-469
    • Lewis, J.D.1    Izaurralde, E.2
  • 34
    • 0035943427 scopus 로고    scopus 로고
    • An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis
    • Hugouvieux, V., Kwak, J.M. and Schroeder, J.I. (2001) An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis. Cell 106, 477-487
    • (2001) Cell , vol.106 , pp. 477-487
    • Hugouvieux, V.1    Kwak, J.M.2    Schroeder, J.I.3
  • 35
    • 16544363078 scopus 로고    scopus 로고
    • A mutation in the cap binding protein 20 gene confers drought tolerance to Arabidopsis
    • Papp, I., Mur, L.A., Dalmadi, A., Dulai, S. and Koncz, C. (2004) A mutation in the cap binding protein 20 gene confers drought tolerance to Arabidopsis. Plant Mol. Biol. 55, 679-686
    • (2004) Plant Mol. Biol. , vol.55 , pp. 679-686
    • Papp, I.1    Mur, L.A.2    Dalmadi, A.3    Dulai, S.4    Koncz, C.5
  • 36
    • 5144234757 scopus 로고    scopus 로고
    • Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis
    • Bezerra, I.C., Michaels, S.D., Schomburg, F.M. and Amasino, R.M. (2004) Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis. Plant J. 40, 112-119
    • (2004) Plant J. , vol.40 , pp. 112-119
    • Bezerra, I.C.1    Michaels, S.D.2    Schomburg, F.M.3    Amasino, R.M.4
  • 37
    • 51149123108 scopus 로고    scopus 로고
    • MRNA cap binding proteins: Effects on abscisic acid signal transduction, mRNA processing, and microarray analyses
    • Kuhn, J.M., Hugouvieux, V. and Schroeder, J.I. (2008) mRNA cap binding proteins: effects on abscisic acid signal transduction, mRNA processing, and microarray analyses. Curr. Top. Microbiol. Immunol. 326, 139-150
    • (2008) Curr. Top. Microbiol. Immunol. , vol.326 , pp. 139-150
    • Kuhn, J.M.1    Hugouvieux, V.2    Schroeder, J.I.3
  • 38
    • 47249089938 scopus 로고    scopus 로고
    • Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
    • Laubinger, S., Sachsenberg, T., Zeller, G., Busch, W., Lohmann, J.U., Rätsch, G. and Weigel, D. (2008) Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 105, 8795-8800
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 8795-8800
    • Laubinger, S.1    Sachsenberg, T.2    Zeller, G.3    Busch, W.4    Lohmann, J.U.5    Rätsch, G.6    Weigel, D.7
  • 40
    • 33845622065 scopus 로고    scopus 로고
    • Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • Kertész, S., Kerényi, Z., Mérai, Z., Bartos, I., Palfy, T., Barta, E. and Silhavy, D. (2006) Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res. 34, 6147-6157
    • (2006) Nucleic Acids Res. , vol.34 , pp. 6147-6157
    • Kertész, S.1    Kerényi, Z.2    Mérai, Z.3    Bartos, I.4    Palfy, T.5    Barta, E.6    Silhavy, D.7
  • 41
    • 6944256813 scopus 로고    scopus 로고
    • Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
    • Mendall, J.T., Sharifi, N.A., Meyers, J.L., Martinez-Murillo, F. and Dietz, H.C. (2004) Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat. Genet. 36, 1073-1078
    • (2004) Nat. Genet. , vol.36 , pp. 1073-1078
    • Mendall, J.T.1    Sharifi, N.A.2    Meyers, J.L.3    Martinez-Murillo, F.4    Dietz, H.C.5
  • 42
    • 0347416978 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast
    • He, F., Li, X., Spatrick, P., Casillo, R., Dong, S. and Jacobson, A. (2003) Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast. Mol. Cell 12, 1439-1452
    • (2003) Mol. Cell , vol.12 , pp. 1439-1452
    • He, F.1    Li, X.2    Spatrick, P.3    Casillo, R.4    Dong, S.5    Jacobson, A.6
  • 43
    • 36849007471 scopus 로고    scopus 로고
    • Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation
    • Schöning, J.C., Streitner, C., Page, D.R., Hennig, S., Uchida, K., Wolf, E., Furuya, M. and Staiger, D. (2007) Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation. Plant J. 52, 1119-1130
    • (2007) Plant J. , vol.52 , pp. 1119-1130
    • Schöning, J.C.1    Streitner, C.2    Page, D.R.3    Hennig, S.4    Uchida, K.5    Wolf, E.6    Furuya, M.7    Staiger, D.8
  • 44
    • 58749102066 scopus 로고    scopus 로고
    • Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
    • Schöning, J.C., Streitner, C., Meyer, I.M., Gao, Y. and Staiger, D. (2008) Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res. 36, 6977-6987
    • (2008) Nucleic Acids Res. , vol.36 , pp. 6977-6987
    • Schöning, J.C.1    Streitner, C.2    Meyer, I.M.3    Gao, Y.4    Staiger, D.5
  • 45
    • 33745899048 scopus 로고    scopus 로고
    • Alternative splicing: New insights from global analyses
    • Blencowe, B.J. (2006) Alternative splicing: new insights from global analyses. Cell 126, 37-47
    • (2006) Cell , vol.126 , pp. 37-47
    • Blencowe, B.J.1


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