-
1
-
-
38549141229
-
Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre
-
Bennett-Lovsey RM, Herbert AD, Sternberg MJ, Kelley LA (2008) Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre. Proteins 70:611-625.
-
(2008)
Proteins
, vol.70
, pp. 611-625
-
-
Bennett-Lovsey, R.M.1
Herbert, A.D.2
Sternberg, M.J.3
Kelley, L.A.4
-
2
-
-
0037121756
-
Localization of the Slack potassium channel in the rat central nervous system
-
DOI 10.1002/cne.10439
-
Bhattacharjee A, Gan L, Kaczmarek LK (2002) Localization of the Slack potassium channel in the rat central nervous system. J Comp Neurol 454:241-254. (Pubitemid 35423834)
-
(2002)
Journal of Comparative Neurology
, vol.454
, Issue.3
, pp. 241-254
-
-
Bhattacharjee, A.1
Gan, L.2
Kaczmarek, L.K.3
-
3
-
-
0347694860
-
Slick (Slo2.1), a Rapidly-Gating Sodium-Activated Potassium Channel Inhibited by ATP
-
Bhattacharjee A, Joiner WJ, Wu M, Yang Y, Sigworth FJ, Kaczmarek LK (2003) Slick (Slo2.1), a rapidly-gating sodium-activated potassium channel inhibited by ATP. J Neurosci 23:11681-11691. (Pubitemid 38021295)
-
(2003)
Journal of Neuroscience
, vol.23
, Issue.37
, pp. 11681-11691
-
-
Bhattacharjee, A.1
Joiner, W.J.2
Wu, M.3
Yang, Y.4
Sigworth, F.J.5
Kaczmarek, L.K.6
-
4
-
-
84986512474
-
Charmm: A program for macromolecular energy minimization, and dynamics calculations
-
Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M (1983) Charmm: a program for macromolecular energy, minimization, and dynamics calculations. J Comput Chem 4:187-217.
-
(1983)
J Comput Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
5
-
-
55349102375
-
+ channel, regulated by alternative promoters, differentially modulate rhythmic firing and adaptation
-
+ channel, regulated by alternative promoters, differentially modulate rhythmic firing and adaptation. J Physiol 586:5161-5179.
-
(2008)
J Physiol
, vol.586
, pp. 5161-5179
-
-
Brown, M.R.1
Kronengold, J.2
Gazula, V.R.3
Spilianakis, C.G.4
Flavell, R.A.5
Von Hehn, C.A.6
Bhattacharjee, A.7
Kaczmarek, L.K.8
-
7
-
-
58149291943
-
Molecular mechanism of ion-ion and ion-subtrate coupling in the NA+-dependent leucine trasporter LeuT
-
Caplan DA, Subbotina JO, Noskov SY (2008) Molecular mechanism of ion-ion and ion-subtrate coupling in the NA+-dependent leucine trasporter LeuT. Biophys J 95:4613-4621.
-
(2008)
Biophys J
, vol.95
, pp. 4613-4621
-
-
Caplan, D.A.1
Subbotina, J.O.2
Noskov, S.Y.3
-
8
-
-
65649083349
-
The N-terminal domain of Slack determines the formation and trafficking of Slick/Slack heteromeric sodium-activated potassium channels
-
Chen H, Kronengold J, Yan Y, Gazula VR, Brown MR, Ma L, Ferreira G, Yang Y, Bhattacharjee A, Sigworth FJ, Salkoff L, Kaczmarek LK (2009) The N-terminal domain of Slack determines the formation and trafficking of Slick/Slack heteromeric sodium-activated potassium channels. J Neurosci 29:5654-5665.
-
(2009)
J Neurosci
, vol.29
, pp. 5654-5665
-
-
Chen, H.1
Kronengold, J.2
Yan, Y.3
Gazula, V.R.4
Brown, M.R.5
Ma, L.6
Ferreira, G.7
Yang, Y.8
Bhattacharjee, A.9
Sigworth, F.J.10
Salkoff, L.11
Kaczmarek, L.K.12
-
9
-
-
63049128092
-
Molecular mechanisms of BK channel activation
-
Cui J, Yang H, Lee US (2009) Molecular mechanisms of BK channel activation. Cell Mol Life Sci 66:852-875.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 852-875
-
-
Cui, J.1
Yang, H.2
Lee, U.S.3
-
10
-
-
65249124122
-
Computations of standard binding free energies with molecular dynamics simulations
-
Deng Y, Roux B (2009) Computations of standard binding free energies with molecular dynamics simulations. J Phys Chem B 113:2234-2246.
-
(2009)
J Phys Chem B
, vol.113
, pp. 2234-2246
-
-
Deng, Y.1
Roux, B.2
-
11
-
-
0028282115
-
+ channels: A new family of large-conductance ion channels
-
+ channels: a new family of large-conductance ion channels. Trends Neurosci 17:155-160.
-
(1994)
Trends Neurosci
, vol.17
, pp. 155-160
-
-
Dryer, S.E.1
-
13
-
-
73049154846
-
Cation selective electrodes and their mode of operation
-
Eisenman G (1962) Cation selective electrodes and their mode of operation. Biophys J 2:259-323.
-
(1962)
Biophys J
, vol.2
, pp. 259-323
-
-
Eisenman, G.1
-
14
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG (1995) A smooth particle mesh Ewald method. J Chem Phys 103:8577-8593.
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
15
-
-
36449007836
-
Constant-pressure molecular-dynamics simulation: The Langevin piston method
-
Feller SE, Zhang YH, Pastor RW, Brooks BR (1995) Constant-pressure molecular-dynamics simulation: the Langevin piston method. J Chem Phys 103:4613-4621.
-
(1995)
J Chem Phys
, vol.103
, pp. 4613-4621
-
-
Feller, S.E.1
Zhang, Y.H.2
Pastor, R.W.3
Brooks, B.R.4
-
16
-
-
49249135312
-
Slack and Slick KNa channels are required for the depolarizing afterpotential of acutely isolated, medium diameter rat dorsal root ganglion neurons
-
Gao SB, Wu Y, Lü CX, Guo ZH, Li CH, Ding JP (2008) Slack and Slick KNa channels are required for the depolarizing afterpotential of acutely isolated, medium diameter rat dorsal root ganglion neurons. Acta Pharmacol Sin 29:899-905.
-
(2008)
Acta Pharmacol Sin
, vol.29
, pp. 899-905
-
-
Gao, S.B.1
Wu, Y.2
Lü, C.X.3
Guo, Z.H.4
Li, C.H.5
Ding, J.P.6
-
20
-
-
0037198626
-
Crystal structure and mechanism of a calcium-gated potassium channel
-
DOI 10.1038/417515a
-
Jiang Y, Lee A, Chen J, Cadene M, Chait BT, MacKinnon R (2002a) Crystal structure and mechanism of a calcium-gated potassium channel. Nature 417:515-522. (Pubitemid 34595912)
-
(2002)
Nature
, vol.417
, Issue.6888
, pp. 515-522
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
21
-
-
0037198625
-
The open pore conformation of potassium channels
-
DOI 10.1038/417523a
-
Jiang Y, Lee A, Chen J, Cadene M, Chait BT, MacKinnon R (2002b) The open pore conformation of potassium channels. Nature 417:523-526. (Pubitemid 34595913)
-
(2002)
Nature
, vol.417
, Issue.6888
, pp. 523-526
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
23
-
-
68949149548
-
CHARMM-GUI membrane builder for mixed bilayers and its application to yeast membranes
-
Jo S, Lim JB, Klauda JB, Im W (2009) CHARMM-GUI membrane builder for mixed bilayers and its application to yeast membranes. Biophys J 97:50-58.
-
(2009)
Biophys J
, vol.97
, pp. 50-58
-
-
Jo, S.1
Lim, J.B.2
Klauda, J.B.3
Im, W.4
-
25
-
-
70450106216
-
Improved prediction of protein side-chain conformations with SCWRL4
-
Krivov GG, Shapovalov MV, Dunbrack RL Jr (2009) Improved prediction of protein side-chain conformations with SCWRL4. Proteins 77:778-795.
-
(2009)
Proteins
, vol.77
, pp. 778-795
-
-
Krivov, G.G.1
Shapovalov, M.V.2
Dunbrack Jr., R.L.3
-
26
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules. 1. The method
-
Kumar S, Bouzida D, Swendsen RH, Kollman PA, Rosenberg JM (1992) The weighted histogram analysis method for free-energy calculations on biomolecules. 1. The method. J Comput Chem 13:1011-1021.
-
(1992)
J Comput Chem
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
27
-
-
0037071897
-
2 interactions underlie channelopathies
-
DOI 10.1016/S0896-6273(02)00725-0
-
Lopes CM, Zhang H, Rohacs T, Jin T, Yang J, Logothetis DE (2002) Alterations in conserved Kir channel-PIP2 interactions underlie channelopathies. Neuron 34:933-944. (Pubitemid 34722283)
-
(2002)
Neuron
, vol.34
, Issue.6
, pp. 933-944
-
-
Lopes, C.M.B.1
Zhang, H.2
Rohacs, T.3
Jin, T.4
Yang, J.5
Logothetis, D.E.6
-
28
-
-
0025157775
-
+ current in cardiac cells: Rectification, open probability, block and role in digitalis toxicity
-
+ current in cardiac cells: rectification, open probability, block and role in digitalis toxicity. Pflugers Arch 416:766-768.
-
(1990)
Pflugers Arch
, vol.416
, pp. 766-768
-
-
Luk, H.N.1
Carmeliet, E.2
-
29
-
-
0035855251
-
+ selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations
-
+ selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations. Biochim Biophys Acta 1548:194-202.
-
(2001)
Biochim Biophys Acta
, vol.1548
, pp. 194-202
-
-
Luzhkov, V.B.1
Aqvist, J.2
-
30
-
-
33748495575
-
Computational study of the binding affinity and selectivity of the bacterial ammonium transporter AmtB
-
DOI 10.1021/bi0610799
-
Luzhkov VB, Almlöf M, Nervall M, Aqvist J (2006) Computational study of the binding affinity and selectivity of the bacterial ammonium transporter AmtB. Biochemistry 45:10807-10814. (Pubitemid 44360150)
-
(2006)
Biochemistry
, vol.45
, Issue.36
, pp. 10807-10814
-
-
Luzhkov, V.B.1
Almlof, M.2
Nervall, M.3
Aqvist, J.4
-
31
-
-
0026706583
-
Role of Na-activated K channel, Na-K-Cl cotransport, and Na-K pump in [K]e changes during ischemia in rat heart
-
Mitani A, Shattock MJ (1992) Role of Na-activated K channel, Na-K-Cl cotransport, and Na-K pump in [K]e changes during ischemia in rat heart. Am J Physiol 263:H333-H340.
-
(1992)
Am J Physiol
, vol.263
-
-
Mitani, A.1
Shattock, M.J.2
-
32
-
-
64049102289
-
Binding of small-molecule ligands to proteins: "what you see" is not always "what you get."
-
Mobley DL, Dill KA (2009) Binding of small-molecule ligands to proteins: "what you see" is not always "what you get." Structure 17:489-498.
-
(2009)
Structure
, vol.17
, pp. 489-498
-
-
Mobley, D.L.1
Dill, K.A.2
-
36
-
-
33846625994
-
Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels
-
Noskov SY, Roux B (2007) Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels. J Gen Physiol 129:135-143.
-
(2007)
J Gen Physiol
, vol.129
, pp. 135-143
-
-
Noskov, S.Y.1
Roux, B.2
-
37
-
-
40649098564
-
Control of ion selectivity in LeuT two Na+ binding sites with two different mechanisms
-
Noskov SY, Roux B (2008) Control of ion selectivity in LeuT: two Na+ binding sites with two different mechanisms. J Mol Biol 377:804-818.
-
(2008)
J Mol Biol
, vol.377
, pp. 804-818
-
-
Noskov, S.Y.1
Roux, B.2
-
38
-
-
7244251461
-
Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
-
DOI 10.1038/nature02943
-
Noskov SY, Bernèche S, Roux B (2004) Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands. Nature 431:830-834. (Pubitemid 39434076)
-
(2004)
Nature
, vol.431
, Issue.7010
, pp. 830-834
-
-
Noskov, S.Y.1
Berneche, S.2
Roux, B.3
-
40
-
-
14544298750
-
Cytoplasmic domain structures of Kir2.1 and Kir3.1 show sites for modulating gating and rectification
-
DOI 10.1038/nn1411
-
Pegan S, Arrabit C, Zhou W, Kwiatkowski W, Collins A, Slesinger PA, Choe S (2005) Cytoplasmic domain structures of Kir2.1 and Kir3.1 show sites for modulating gating and rectification. Nat Neurosci 8:279-287. (Pubitemid 40300184)
-
(2005)
Nature Neuroscience
, vol.8
, Issue.3
, pp. 279-287
-
-
Pegan, S.1
Arrabit, C.2
Zhou, W.3
Kwiatkowski, W.4
Collins, A.5
Slesinger, P.A.6
Choe, S.7
-
41
-
-
33749524201
-
New roles for a key glycine and its neighboring residue in potassium channel gating
-
DOI 10.1529/biophysj.105.080242
-
Rosenhouse-Dantsker A, Logothetis DE (2006) New roles for a key glycine and its neighboring residue in potassium channel gating. Biophys J 91:2860-2873. (Pubitemid 44526476)
-
(2006)
Biophysical Journal
, vol.91
, Issue.8
, pp. 2860-2873
-
-
Rosenhouse-Dantsker, A.1
Logothetis, D.E.2
-
42
-
-
51949108599
-
A sodium-mediated structural switch that controls the sensitivity of Kir channels to PtdIns(4,5)P(2)
-
Rosenhouse-Dantsker A, Sui JL, Zhao Q, Rusinova R, Rodríguez- Menchaca AA, Zhang Z, Logothetis DE (2008) A sodium-mediated structural switch that controls the sensitivity of Kir channels to PtdIns(4,5)P(2). Nat Chem Biol 4:624-631.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 624-631
-
-
Rosenhouse-Dantsker, A.1
Sui, J.L.2
Zhao, Q.3
Rusinova, R.4
Rodríguez- Menchaca, A.A.5
Zhang, Z.6
Logothetis, D.E.7
-
43
-
-
33751180811
-
High-conductance potassium channels of the SLO family
-
Salkoff L, Butler A, Ferreira G, Santi C, Wei A (2006) High-conductance potassium channels of the SLO family. Nat Rev Neurosci 7:921-931.
-
(2006)
Nat Rev Neurosci
, vol.7
, pp. 921-931
-
-
Salkoff, L.1
Butler, A.2
Ferreira, G.3
Santi, C.4
Wei, A.5
-
44
-
-
0035277126
-
Extension to the weighted histogram analysis method: Combining umbrella sampling with free energy calculations
-
DOI 10.1016/S0010-4655(00)00215-0
-
Souaille M, Roux B (2001) Extension to the weighted histogram analysis method: combining umbrella sampling with free energy calculations. Comput Phys Commun 135:40-57. (Pubitemid 32265281)
-
(2001)
Computer Physics Communications
, vol.135
, Issue.1
, pp. 40-57
-
-
Souaille, M.1
Roux, B.2
-
46
-
-
65549152473
-
NAD+ activates KNa channels in dorsal root ganglion neurons
-
Tamsett TJ, Picchione KE, Bhattacharjee A (2009) NAD+ activates KNa channels in dorsal root ganglion neurons. J Neurosci 29:5127-5134.
-
(2009)
J Neurosci
, vol.29
, pp. 5127-5134
-
-
Tamsett, T.J.1
Picchione, K.E.2
Bhattacharjee, A.3
-
47
-
-
0037158754
-
Multiple regulatory sites in large-conductance calcium-activated potassium channels
-
DOI 10.1038/nature00956
-
Xia XM, Zeng X, Lingle CJ (2002) Multiple regulatory sites in large-conductance calcium-activated potassium channels. Nature 418:880-884. (Pubitemid 34966307)
-
(2002)
Nature
, vol.418
, Issue.6900
, pp. 880-884
-
-
Xia, X.-M.1
Zeng, X.2
Lingle, C.J.3
-
48
-
-
33847795034
-
Na channels regulate the accuracy of timing of auditory neurons
-
DOI 10.1523/JNEUROSCI.5308-06.2007
-
Yang B, Desai R, Kaczmarek LK (2007) Slack and Slick K(Na) channels regulate the accuracy of timing of auditory neurons. J Neurosci 27:2617-2627. (Pubitemid 46393586)
-
(2007)
Journal of Neuroscience
, vol.27
, Issue.10
, pp. 2617-2627
-
-
Yang, B.1
Desai, R.2
Kaczmarek, L.K.3
-
49
-
-
0037421995
-
The sodium-activated potassium channel is encoded by a member of the Slo gene family
-
DOI 10.1016/S0896-6273(03)00096-5
-
Yuan A, Santi CM, Wei A, Wang ZW, Pollak K, Nonet M, Kaczmarek L, Crowder CM, Salkoff L (2003) The sodium-activated potassium channel is encoded by a member of the Slo gene family. Neuron 37:765-773. (Pubitemid 36288549)
-
(2003)
Neuron
, vol.37
, Issue.5
, pp. 765-773
-
-
Yuan, A.1
Santi, C.M.2
Wei, A.3
Wang, Z.-W.4
Pollak, K.5
Nonet, M.6
Kaczmarek, L.7
Crowder, C.M.8
Salkoff, L.9
-
50
-
-
15244340463
-
Divalent cation sensitivity of BK channel activation supports the existence of three distinct binding sites
-
Zeng XH, Xia XM, Lingle CJ (2005) Divalent cation sensitivity of BK channel activation supports the existence of three distinct binding sites. J Gen Physiol 125:273-286.
-
(2005)
J Gen Physiol
, vol.125
, pp. 273-286
-
-
Zeng, X.H.1
Xia, X.M.2
Lingle, C.J.3
|