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Volumn 73, Issue 1, 2010, Pages 55-67

NifH expression by five groups of phototrophs compared with nitrogenase activity in coastal microbial mats

Author keywords

Cyanobacteria; Gammaproteobacteria; Microbial mat; NifH expression

Indexed keywords

BACTERIAL DNA; NITROGENASE; NITROGENASE REDUCTASE; OXIDOREDUCTASE;

EID: 77953215386     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.00875.x     Document Type: Article
Times cited : (24)

References (50)
  • 1
    • 38049162382 scopus 로고    scopus 로고
    • Variability in benthic diazotrophy and cyanobacterial diversity in a tropical intertidal lagoon
    • Bauer K, Díez B, Lugomela C, Seppälä S, Borg AJ Bergman B (2008) Variability in benthic diazotrophy and cyanobacterial diversity in a tropical intertidal lagoon. FEMS Microbiol Ecol 63 : 205 221.
    • (2008) FEMS Microbiol Ecol , vol.63 , pp. 205-221
    • Bauer, K.1    Díez, B.2    Lugomela, C.3    Seppälä, S.4    Borg, A.J.5    Bergman, B.6
  • 2
    • 0027336566 scopus 로고
    • Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community
    • Bebout BM, Fitzpatrick MW Paerl HW (1993) Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community. Appl Environ Microb 59 : 1495 1503.
    • (1993) Appl Environ Microb , vol.59 , pp. 1495-1503
    • Bebout, B.M.1    Fitzpatrick, M.W.2    Paerl, H.W.3
  • 3
    • 0028282154 scopus 로고
    • Detection and characterization of cyanobacterial nifH genes
    • Ben-Porath J Zehr JP (1994) Detection and characterization of cyanobacterial nifH genes. Appl Environ Microb 60 : 880 887.
    • (1994) Appl Environ Microb , vol.60 , pp. 880-887
    • Ben-Porath, J.1    Zehr, J.P.2
  • 4
    • 73449136317 scopus 로고    scopus 로고
    • Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes
    • Bolhuis H, Severin I, Confurius-Guns V, Wollenzien UIA Stal LJ (2010) Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes. ISME J 4 : 121 130.
    • (2010) ISME J , vol.4 , pp. 121-130
    • Bolhuis, H.1    Severin, I.2    Confurius-Guns, V.3    Wollenzien, U.I.A.4    Stal, L.J.5
  • 6
    • 28444444151 scopus 로고    scopus 로고
    • Dinitrogen fixation by exposed communities on the rim of Tikehau atoll (Tuamotu Archipelago, French Polynesia)
    • Charpy-Roubaud C Larkum AWD (2005) Dinitrogen fixation by exposed communities on the rim of Tikehau atoll (Tuamotu Archipelago, French Polynesia). Coral Reefs 24 : 622 628.
    • (2005) Coral Reefs , vol.24 , pp. 622-628
    • Charpy-Roubaud, C.1    Larkum, A.W.D.2
  • 7
    • 0035656508 scopus 로고    scopus 로고
    • Atmospheric dinitrogen fixation by benthic communities of Tikehau lagoon (Tuamotu archipelago, French Polynesia) and its contribution to benthic primary production
    • Charpy-Roubaud C, Charpy L Larkum AWD (2001) Atmospheric dinitrogen fixation by benthic communities of Tikehau lagoon (Tuamotu archipelago, French Polynesia) and its contribution to benthic primary production. Mar Biol 139 : 991 997.
    • (2001) Mar Biol , vol.139 , pp. 991-997
    • Charpy-Roubaud, C.1    Charpy, L.2    Larkum, A.W.D.3
  • 8
    • 25144513151 scopus 로고    scopus 로고
    • Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean
    • Church MJ, Short CM, Jenkins BD, Karl DM Zehr JP (2005) Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean. Appl Environ Microb 71 : 5362 5370.
    • (2005) Appl Environ Microb , vol.71 , pp. 5362-5370
    • Church, M.J.1    Short, C.M.2    Jenkins, B.D.3    Karl, D.M.4    Zehr, J.P.5
  • 9
    • 62549149804 scopus 로고    scopus 로고
    • Molecular detection and quantification of nifH gene sequences in the rhizosphere of sorghum (Sorghum bicolor) sown with two levels of nitrogen fertilizer
    • Coelho MRR, Marriel IE, Jenkins SN, Lanyon CV, Seldin L O'Donnell AG (2009) Molecular detection and quantification of nifH gene sequences in the rhizosphere of sorghum (Sorghum bicolor) sown with two levels of nitrogen fertilizer. Appl Soil Ecol 42 : 48 53.
    • (2009) Appl Soil Ecol , vol.42 , pp. 48-53
    • Coelho, M.R.R.1    Marriel, I.E.2    Jenkins, S.N.3    Lanyon, C.V.4    Seldin, L.5    O'Donnell, A.G.6
  • 10
    • 17644373134 scopus 로고    scopus 로고
    • Heterotrophic dinitrogen fixation (acetylene reduction) in phosphate-fertilised Microcoleus chthonoplastes microbial mat from the hypersaline inland lake 'la Salada de Chiprana' (NE Spain)
    • de Wit R, Falcon LI Charpy-Roubaud C (2005) Heterotrophic dinitrogen fixation (acetylene reduction) in phosphate-fertilised Microcoleus chthonoplastes microbial mat from the hypersaline inland lake 'la Salada de Chiprana' (NE Spain). Hydrobiologia 534 : 245 253.
    • (2005) Hydrobiologia , vol.534 , pp. 245-253
    • De Wit, R.1    Falcon, L.I.2    Charpy-Roubaud, C.3
  • 11
    • 47249154852 scopus 로고    scopus 로고
    • Evaluation of PCR primers for universal nifH targeting and for assessment of transcribed nifH pools in roots of Oryza longistaminata with and without low nitrogen input
    • Diallo MD, Reinhold-Hurek B Hurek T (2008) Evaluation of PCR primers for universal nifH targeting and for assessment of transcribed nifH pools in roots of Oryza longistaminata with and without low nitrogen input. FEMS Microbiol Ecol 65 : 220 228.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 220-228
    • Diallo, M.D.1    Reinhold-Hurek, B.2    Hurek, T.3
  • 12
    • 0025529102 scopus 로고
    • Nitrogenase activity of Microcoleus lyngbyaceus mat communities in a eutrophic, tropical marine environment
    • Diaz MR, Corredor JE Morell JM (1990) Nitrogenase activity of Microcoleus lyngbyaceus mat communities in a eutrophic, tropical marine environment. Limnol Oceanogr 35 : 1788 1795.
    • (1990) Limnol Oceanogr , vol.35 , pp. 1788-1795
    • Diaz, M.R.1    Corredor, J.E.2    Morell, J.M.3
  • 13
    • 84986958874 scopus 로고
    • Modification of the Fe protein of the nitrogenase of Gloeothece (Nägeli) sp. ATCC
    • 27152 during growth under alternating light and darkness
    • Du C Gallon JR (1993) Modification of the Fe protein of the nitrogenase of Gloeothece (Nägeli) sp. ATCC 27152 during growth under alternating light and darkness. New Phytol 125 : 121 129.
    • (1993) New Phytol , vol.125 , pp. 121-129
    • Du, C.1    Gallon, J.R.2
  • 16
    • 0020873712 scopus 로고
    • Photosynthesis and structure of benthic microbial mats - Microelectrode and SEM studies of four cyanobacterial communities
    • Jørgensen BB, Revsbech NP Cohen Y (1983) Photosynthesis and structure of benthic microbial mats - microelectrode and SEM studies of four cyanobacterial communities. Limnol Oceanogr 28 : 1075 1093.
    • (1983) Limnol Oceanogr , vol.28 , pp. 1075-1093
    • Jørgensen, B.B.1    Revsbech, N.P.2    Cohen, Y.3
  • 17
    • 0028179831 scopus 로고
    • Nitrogen cycling in microbial mats: Rates and patterns of denitrification and nitrogen fixation
    • Joye SB Paerl HW (1994) Nitrogen cycling in microbial mats: rates and patterns of denitrification and nitrogen fixation. Mar Biol 119 : 285 295.
    • (1994) Mar Biol , vol.119 , pp. 285-295
    • Joye, S.B.1    Paerl, H.W.2
  • 18
    • 84986772879 scopus 로고
    • Solar Lake (Sinai), 4. Stromatolitic cyanobacterial mats
    • Krumbein WE, Cohen Y Shilo M (1977) Solar Lake (Sinai), 4. Stromatolitic cyanobacterial mats. Limnol Oceanogr 22 : 635 656.
    • (1977) Limnol Oceanogr , vol.22 , pp. 635-656
    • Krumbein, W.E.1    Cohen, Y.2    Shilo, M.3
  • 19
    • 67349183223 scopus 로고    scopus 로고
    • Vertical partitioning and expression of primary metabolic genes in a thermophilic microbial mat
    • Lau MCY Pointing SB (2009) Vertical partitioning and expression of primary metabolic genes in a thermophilic microbial mat. Extremophiles 13 : 533 540.
    • (2009) Extremophiles , vol.13 , pp. 533-540
    • Lau, M.C.Y.1    Pointing, S.B.2
  • 20
    • 0024832910 scopus 로고
    • Regulation of nitrogenase activity by reversible ADP ribosylation
    • Ludden PW Roberts GP (1989) Regulation of nitrogenase activity by reversible ADP ribosylation. Curr Top Cell Regul 30 : 23 56.
    • (1989) Curr Top Cell Regul , vol.30 , pp. 23-56
    • Ludden, P.W.1    Roberts, G.P.2
  • 21
    • 0026093737 scopus 로고
    • Regulation of nitrogen fixation by different nitrogen sources in the marine non-heterocystous cyanobacterium Trichodesmium sp. NIBB1067
    • Ohki K, Zehr JP, Falkowski PG Fujita Y (1991) Regulation of nitrogen fixation by different nitrogen sources in the marine non-heterocystous cyanobacterium Trichodesmium sp. NIBB1067. Arch Microbiol 156 : 335 337.
    • (1991) Arch Microbiol , vol.156 , pp. 335-337
    • Ohki, K.1    Zehr, J.P.2    Falkowski, P.G.3    Fujita, Y.4
  • 22
    • 0032411333 scopus 로고    scopus 로고
    • 2-fixing microbial consortia associated with the ice cover of Lake Bonney, Antarctica
    • 2-fixing microbial consortia associated with the ice cover of Lake Bonney, Antarctica. Microb Ecol 36 : 231 238.
    • (1998) Microb Ecol , vol.36 , pp. 231-238
    • Olson, J.B.1    Steppe, T.F.2    Litaker, R.W.3    Paerl, H.W.4
  • 23
    • 0033530147 scopus 로고    scopus 로고
    • Ubiquity of heterotrophic diazotrophs in marine microbial mats
    • Olson JB, Litaker RW Paerl HW (1999) Ubiquity of heterotrophic diazotrophs in marine microbial mats. Aquat Microb Ecol 19 : 29 36.
    • (1999) Aquat Microb Ecol , vol.19 , pp. 29-36
    • Olson, J.B.1    Litaker, R.W.2    Paerl, H.W.3
  • 24
    • 1542271375 scopus 로고    scopus 로고
    • Comparison of diazotroph community structure in Lyngbya sp. and Microcoleus chthonoplastes dominated microbial mats from Guerrero Negro, Baja, Mexico
    • Omoregie EO, Crumbliss LL, Bebout BM Zehr JP (2004a) Comparison of diazotroph community structure in Lyngbya sp. and Microcoleus chthonoplastes dominated microbial mats from Guerrero Negro, Baja, Mexico. FEMS Microbiol Ecol 47 : 305 318.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 305-318
    • Omoregie, E.O.1    Crumbliss, L.L.2    Bebout, B.M.3    Zehr, J.P.4
  • 25
    • 16544367691 scopus 로고    scopus 로고
    • Determination of nitrogen-fixing phylotypes in Lyngbya sp. and Microcoleus chthonoplastes cyanobacterial mats from Guerrero Negro, Baja California, Mexico
    • Omoregie EO, Crumbliss LL, Bebout BM Zehr JP (2004b) Determination of nitrogen-fixing phylotypes in Lyngbya sp. and Microcoleus chthonoplastes cyanobacterial mats from Guerrero Negro, Baja California, Mexico. Appl Environ Microb 70 : 2119 2128.
    • (2004) Appl Environ Microb , vol.70 , pp. 2119-2128
    • Omoregie, E.O.1    Crumbliss, L.L.2    Bebout, B.M.3    Zehr, J.P.4
  • 26
    • 0000449568 scopus 로고
    • 2 fixation in natural waters
    • 2 fixation in natural waters. Adv Microb Ecol 11 : 305 344.
    • (1990) Adv Microb Ecol , vol.11 , pp. 305-344
    • Paerl, H.W.1
  • 27
    • 0029958504 scopus 로고    scopus 로고
    • Seasonal nitrogen fixation dynamics in a marine microbial mat: Potential roles of cyanobacteria and microheterotrophs
    • Paerl HW, Fitzpatrick M Bebout BM (1996) Seasonal nitrogen fixation dynamics in a marine microbial mat: potential roles of cyanobacteria and microheterotrophs. Limnol Oceanogr 41 : 419 427.
    • (1996) Limnol Oceanogr , vol.41 , pp. 419-427
    • Paerl, H.W.1    Fitzpatrick, M.2    Bebout, B.M.3
  • 28
    • 77953189775 scopus 로고    scopus 로고
    • The abundance and diversity of soilborne, nitrogen-fixing bacteria under different turf-grass management systems
    • Park S, Spadden-Gardener B Grewal P (2007) The abundance and diversity of soilborne, nitrogen-fixing bacteria under different turf-grass management systems. Phytopathology 97 : 89 90.
    • (2007) Phytopathology , vol.97 , pp. 89-90
    • Park, S.1    Spadden-Gardener, B.2    Grewal, P.3
  • 29
    • 0035116353 scopus 로고    scopus 로고
    • Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil
    • Poly F, Monrozier LJ Bally R (2001) Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152 : 95 103.
    • (2001) Res Microbiol , vol.152 , pp. 95-103
    • Poly, F.1    Monrozier, L.J.2    Bally, R.3
  • 30
    • 0346629908 scopus 로고
    • Biological nitrogen fixation: Fundamentals
    • Postgate JR (1982) Biological nitrogen fixation: fundamentals. Philos T Roy Soc B 296 : 375 385.
    • (1982) Philos T Roy Soc B , vol.296 , pp. 375-385
    • Postgate, J.R.1
  • 31
    • 53849088540 scopus 로고    scopus 로고
    • Light dependency of nitrogen fixation in a coastal cyanobacterial mat
    • Severin I Stal LJ (2008) Light dependency of nitrogen fixation in a coastal cyanobacterial mat. ISME J 2 : 1077 1088.
    • (2008) ISME J , vol.2 , pp. 1077-1088
    • Severin, I.1    Stal, L.J.2
  • 32
    • 77953217931 scopus 로고    scopus 로고
    • Diazotrophic microbial mats
    • Seckbach, J. Oren, A. eds). Springer
    • Severin I Stal LJ (2010) Diazotrophic microbial mats. Microbial Mats (Seckbach J Oren A, eds), Springer
    • (2010) Microbial Mats
    • Severin, I.1    Stal, L.J.2
  • 33
    • 57449118500 scopus 로고    scopus 로고
    • Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
    • Smith CJ Osborn AM (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol 67 : 6 20.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 6-20
    • Smith, C.J.1    Osborn, A.M.2
  • 34
    • 0035215138 scopus 로고    scopus 로고
    • Nitrogenase activity in cyanobacteria measured by the acetylene reduction assay: A comparison between batch incubation and on-line monitoring
    • Staal M, Lintel-Hekkert ST, Harren F Stal LJ (2001) Nitrogenase activity in cyanobacteria measured by the acetylene reduction assay: a comparison between batch incubation and on-line monitoring. Environ Microbiol 3 : 343 351.
    • (2001) Environ Microbiol , vol.3 , pp. 343-351
    • Staal, M.1    Lintel-Hekkert, S.T.2    Harren, F.3    Stal, L.J.4
  • 35
    • 0035667378 scopus 로고    scopus 로고
    • Coastal microbial mats: The physiology of a small-scale ecosystem
    • Stal LJ (2001) Coastal microbial mats: the physiology of a small-scale ecosystem. S Afr J Bot 67 : 399 410.
    • (2001) S Afr J Bot , vol.67 , pp. 399-410
    • Stal, L.J.1
  • 36
    • 0003162619 scopus 로고
    • Temporal separation of nitrogen fixation and photosynthesis in the filamentous, non-heterocystous cyanobacterium Oscillatoria sp
    • Stal LJ Krumbein WE (1987) Temporal separation of nitrogen fixation and photosynthesis in the filamentous, non-heterocystous cyanobacterium Oscillatoria sp. Arch Microbiol 149 : 76 80.
    • (1987) Arch Microbiol , vol.149 , pp. 76-80
    • Stal, L.J.1    Krumbein, W.E.2
  • 37
    • 0001010126 scopus 로고
    • Nitrogen fixation associated with the cyanobacterial mat of a marine laminated microbial ecosystem
    • Stal LJ, Grossberger S Krumbein WE (1984) Nitrogen fixation associated with the cyanobacterial mat of a marine laminated microbial ecosystem. Mar Biol 82 : 217 224.
    • (1984) Mar Biol , vol.82 , pp. 217-224
    • Stal, L.J.1    Grossberger, S.2    Krumbein, W.E.3
  • 38
    • 46549100665 scopus 로고
    • Structure and development of a benthic marine microbial mat
    • Stal LJ, van Gemerden H Krumbein WE (1985) Structure and development of a benthic marine microbial mat. FEMS Microbiol Ecol 31 : 111 125.
    • (1985) FEMS Microbiol Ecol , vol.31 , pp. 111-125
    • Stal, L.J.1    Van Gemerden, H.2    Krumbein, W.E.3
  • 39
    • 0036050233 scopus 로고    scopus 로고
    • 2 fixation by sulfate-reducing bacteria in a marine intertidal microbial mat
    • 2 fixation by sulfate-reducing bacteria in a marine intertidal microbial mat. Aquat Microb Ecol 28 : 1 12.
    • (2002) Aquat Microb Ecol , vol.28 , pp. 1-12
    • Steppe, T.F.1    Paerl, H.W.2
  • 41
    • 42049096529 scopus 로고    scopus 로고
    • 2 fixation over the diel cycle in a hot spring microbial mat
    • 2 fixation over the diel cycle in a hot spring microbial mat. ISME J 2 : 364 378.
    • (2008) ISME J , vol.2 , pp. 364-378
    • Steunou, A.S.1    Jensen, S.I.2    Brecht, E.3
  • 43
    • 35648941632 scopus 로고    scopus 로고
    • Phylogeny and evolution of the family Ectothiorhodospiraceae based on comparison of 16S rRNA, cbbL and nifH gene sequences
    • Tourova TP, Spiridonova EM, Berg IA, Slobodova NV, Boulygina ES Sorokin DY (2007) Phylogeny and evolution of the family Ectothiorhodospiraceae based on comparison of 16S rRNA, cbbL and nifH gene sequences. Int J Syst Evol Micr 57 : 2387 2398.
    • (2007) Int J Syst Evol Micr , vol.57 , pp. 2387-2398
    • Tourova, T.P.1    Spiridonova, E.M.2    Berg, I.A.3    Slobodova, N.V.4    Boulygina, E.S.5    Sorokin, D.Y.6
  • 44
    • 0025677030 scopus 로고
    • Interactions between nitrogen fixation and oxygenic photosynthesis in a marine cyanobacterial mat
    • Villbrandt M, Stal LJ Krumbein WE (1990) Interactions between nitrogen fixation and oxygenic photosynthesis in a marine cyanobacterial mat. FEMS Microbiol Ecol 74 : 59 72.
    • (1990) FEMS Microbiol Ecol , vol.74 , pp. 59-72
    • Villbrandt, M.1    Stal, L.J.2    Krumbein, W.E.3
  • 45
    • 0033916012 scopus 로고    scopus 로고
    • Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR
    • Zani S, Mellon MT, Collier JL Zehr JP (2000) Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR. Appl Environ Microb 66 : 3119 3124.
    • (2000) Appl Environ Microb , vol.66 , pp. 3119-3124
    • Zani, S.1    Mellon, M.T.2    Collier, J.L.3    Zehr, J.P.4
  • 46
    • 0024746373 scopus 로고
    • Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii
    • Zehr JP McReynolds LA (1989) Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii. Appl Environ Microb 55 : 2522 2526.
    • (1989) Appl Environ Microb , vol.55 , pp. 2522-2526
    • Zehr, J.P.1    McReynolds, L.A.2
  • 47
    • 0027416528 scopus 로고
    • Modification of the Fe protein of nitrogenase in natural populations of Trichodesmium thiebautii
    • Zehr JP, Wyman M, Miller V, Duguay L Capone DG (1993) Modification of the Fe protein of nitrogenase in natural populations of Trichodesmium thiebautii. Appl Environ Microb 59 : 669 676.
    • (1993) Appl Environ Microb , vol.59 , pp. 669-676
    • Zehr, J.P.1    Wyman, M.2    Miller, V.3    Duguay, L.4    Capone, D.G.5
  • 49
    • 0038234799 scopus 로고    scopus 로고
    • Nitrogenase gene diversity and microbial community structure: A cross-system comparison
    • Zehr JP, Jenkins BD, Short SM Steward GF (2003) Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5 : 539 554.
    • (2003) Environ Microbiol , vol.5 , pp. 539-554
    • Zehr, J.P.1    Jenkins, B.D.2    Short, S.M.3    Steward, G.F.4


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