Cdc6/Orc1 from Pyrococcus furiosus may act as the origin recognition protein and Mcm helicase recruiter

Genes to Cells

Volumn 15, Issue 5, 2010, Pages 537-552

  Akita, Masaki ^a,b   Adachi, Akinori ^a   Takemura, Kie ^a   Yamagami, Takeshi ^a   Matsunaga, Fujihiko ^a,c   Ishino, Yoshizumi ^a,d  

^a KYUSHU UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c Toyo College of Food Technology   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; CELL CYCLE PROTEIN 6; DEOXYRIBONUCLEASE I; HELICASE; MCM HELICASE; ORIGIN RECOGNITION COMPLEX; ORIGIN RECOGNITION COMPLEX 1; UNCLASSIFIED DRUG; ARCHAEAL PROTEIN; DNA HELICASE; MACROMOLECULE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL METABOLISM; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DNA DENATURATION; DNA FOOTPRINTING; DNA REPLICATION; ENZYME ACTIVITY; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN CONFORMATION; PROTEIN DEGRADATION; PROTEIN DNA BINDING; PROTEIN FUNCTION; PYROCOCCUS FURIOSUS; CHEMISTRY; DNA REPLICATION ORIGIN; GENETICS; MACROMOLECULE; METABOLISM; TWO HYBRID SYSTEM;

ARCHAEA; EUKARYOTA; PYROCOCCUS FURIOSUS;

ARCHAEAL PROTEINS; DNA HELICASES; DNA REPLICATION; MACROMOLECULAR SUBSTANCES; ORIGIN RECOGNITION COMPLEX; PROTEIN CONFORMATION; PYROCOCCUS FURIOSUS; REPLICATION ORIGIN; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 77953176881     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2010.01402.x     Document Type: Article

References (42)

1. Barry ER, Bell SD. DNA replication in the archaea. Microbiol. Mol. Biol. Rev. 2006, 70:876-887.
2. Bell SP, Stillman B. ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature 1992, 357:128-134.
3. Bowers JL, Randell JC, Chen S, Bell SP. ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication. Mol. Cell 2004, 16:967-978.
4. Chong JP, Hayashi MK, Simon MN, Xu RM, Stillman B. A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase. Proc. Natl Acad. Sci. USA 2000, 97:1530-1535.
5. De Felice M, Esposito L, Pucci B, Carpentieri F, De Falco M, Rossi M, Pisani FM. Biochemical characterization of a CDC6-like protein from the crenarchaeon Sulfolobus solfataricus. J. Biol. Chem. 2003, 278:46424-46431.
6. Dueber EL, Corn JE, Bell SD, Berger JM. Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex. Science 2007, 317:1210-1213.
7. Fletcher RJ, Bishop BE, Leon RP, Sclafani RA, Ogata CM, Chen XS. The structure and function of MCM from archaeal M. thermoautotrophicum. Nat. Struct. Biol. 2003, 3:160-167.
8. Gaudier M, Schuwirth BS, Westcott SL, Wigley DB. Structural basis of DNA replication origin recognition by an ORC protein. Science 2007, 317:1213-1216.
9. Grabowski B, Kelman Z. Autophosphorylation of archaeal Cdc6 homologues is regulated by DNA. J. Bacteriol. 2001, 185:459-464.
10. Grainge I, Gaudier M, Schuwirth BS, Westcott SL, Sandall J, Atanassova N, Wigley DB. Biochemical analysis of a DNA replication origin in the archaeon Aeropyrum pernix. J. Mol. Biol. 2006, 363:355-369.
11. Grainge I, Scaife S, Wigley DB. Biochemical analysis of components of the pre-replication complex of Archaeoglobus fulgidus. Nucleic Acids Res. 2003, 31:4888-4898.
12. Haugland GT, Shin JH, Birkeland NK, Kelman Z. Stimulation of MCM helicase activity by a Cdc6 protein in the archaeon Thermoplasma acidophilum. Nucleic Acids Res. 2006, 34:6337-6344.
13. Iyer LM, Leipe DD, Koonin EV, Aravind L. Evolutionary history and higher order classification of AAA+ ATPases. J. Struct. Biol. 2004, 146:11-31.
14. Kasiviswanathan R, Shin JH, Kelman Z. Interactions between the archaeal Cdc6 and MCM proteins modulate their biochemical properties. Nucleic Acids Res. 2005, 33:4940-4950.
15. Kawasaki Y, Kim HD, Kojima A, Seki T. Reconstitution of Saccharomyces cerevisiae prereplicative complex assembly in vitro. Genes Cells 2006, 11:745-756.
16. Kelman LM, Kelman Z. Archaea: an archetype for replication initiation studies? Mol. Microbiol. 2003, 48:605-615.
17. Kelman Z, Lee JK, Hurwitz J. The single minichromosome maintenance protein of Methanobacterium thermoautotrophicumΔH contains DNA helicase activity. Proc. Natl Acad. Sci. USA 1999, 96:14783-14788.
18. Klemm RD, Austin RJ, Bell SP. Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complex. Cell 1997, 88:493-502.
19. Liu J, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM. Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Mol. Cell 2000, 6:637-648.
20. Lopez P, Philippe H, Myllykallio H, Forterre P. Identification of putative chromosomal origins of replication in Archaea. Mol. Microbiol. 1999, 4:883-886.
21. Majerník A, Chong J. A conserved mechanism for replication origin recognition and binding in archaea. Biochem. J. 2008, 409:511-518.
22. Marinsek N, Barry ER, Makarova KS, Dionne I, Koonin EV, Bell SD. GINS, a central nexus in the archaeal DNA replication fork. EMBO Rep. 2006, 5:539-545.
23. Masai H, You Z, Arai K. Control of DNA replication: regulation and activation of eukaryotic replicative helicase, MCM. IUBMB Life. 2005, 57:323-335.
24. Matsunaga F, Forterre P, Ishino Y, Myllykallio H. In vivo interactions of archaeal Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin. Proc. Natl Acad. Sci. USA 2001, 98:11152-11157.
25. Matsunaga F, Glatigny A, Mucchielli-Giorgi MH, Agier N, Delacroix H, Marisa L, Durosay P, Ishino Y, Aggerbeck L, Forterre P. Genomewide and biochemical analyses of DNA-binding of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp. Nucleic Acids Res. 2007, 35:3214-3222.
26. Matsunaga F, Norais C, Forterre P, Myllykallio H. Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin. EMBO Rep. 2003, 4:154-158.
27. Matsunaga F, Takemura K, Akita M, Adachi A, Yamagami T, Ishino Y. Localized melting of duplex DNA by Cdc6/Orc1 at the DNA replication origin in the hyperthermophilic archaeon Pyrococcus furiosus. Extremophiles 2010, 14:21-31.
28. Ozaki S, Katayama T. DnaA structure, function, and dynamics in the initiation at the chromosomal origin. Plasmid. 2009, 62:71-82.
29. Randell JC, Bowers JL, Rodríguez HK, Bell SP. Sequential ATP hydrolysis by Cdc6 and ORC directs loading of the Mcm2-7 helicase. Mol. Cell 2006, 21:29-39.
30. Robinson NP, Bell SD. Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes. Proc. Natl Acad. Sci. USA 2007, 104:5806-5811.
31. Robinson NP, Dionne I, Lundgren M, Marsh VL, Bernander R, Bell SD. Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus. Cell 2004, 116:25-38.
32. Sakakibara N, Kelman LM, Kelman Z. How is the archaeal MCM helicase assembled at the origin? Possible mechanisms. Biochem. Soc. Trans. 2009, 37:7-11.
33. Seki T, Diffley JF. Stepwise assembly of initiation proteins at budding yeast replication origins in vitro. Proc. Natl Acad. Sci. USA 2000, 97:14115-14120.
34. Shechter DF, Ying CY, Gautier J. The intrinsic DNA helicase activity of Methanobacterium thermoautotrophicumΔ H minichromosome maintenance protein. J. Biol. Chem. 2000, 275:15049-15059.
35. Shin JH, Grabowski B, Kasiviswanathan R, Bell SD, Kelman Z. Regulation of minichromosome maintenance helicase activity by Cdc6. J. Biol. Chem. 2003, 278:38059-38067.
36. Shin JH, Heo GY, Kelman Z. The Methanothermobacter thermautotrophicus Cdc6-2 protein, the putative helicase loader, dissociates the minichromosome maintenance helicase. J. Bacteriol. 2008, 190:4091-4094.
37. Siddiqui K, Stillman B. ATP-dependent assembly of the human origin recognition complex. J. Biol. Chem. 2007, 282:32370-32383.
38. Singleton MR, Morales R, Grainge I, Cook N, Isupov MN, Wigley DB. Conformational changes induced by nucleotide binding in Cdc6/ORC from Aeropyrum pernix. J. Mol. Biol. 2004, 343:547-557.
39. Speck C, Chen Z, Li H, Stillman B. ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. Nat. Struct. Mol. Biol. 2005, 11:965-971.
40. Speck C, Stillman B. Cdc6 ATPase activity regulates ORC × Cdc6 stability and the selection of specific DNA sequences as origins of DNA replication. J. Biol. Chem. 2007, 282:11705-11714.
41. Uemori T, Sato Y, Kato I, Doi H, Ishino Y. A novel DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus: gene cloning, expression, and characterization. Genes Cells 1997, 8:499-512.
42. Yoshimochi T, Fujikane R, Kawanami M, Matsunaga F, Ishino Y. The GINS complex from Pyrococcus furiosus stimulates the MCM helicase activity. J. Biol. Chem. 2008, 283:1601-1609.