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Volumn 19, Issue 2, 2010, Pages 99-104

In Situ hybridization for coccidioides immitis 5.8S Ribosomal RNA sequences in formalin-fixed, paraffin-embedded pulmonary specimens using a locked nucleic acid probe: A rapid means for identification in tissue sections

Author keywords

Coccidioides immitis; In situ hybridization; LNA; rRNA

Indexed keywords

BIOTIN; DNA; LOCKED NUCLEIC ACID; OLIGONUCLEOTIDE; PARAFFIN; RNA 5.8S;

EID: 77953149220     PISSN: 10529551     EISSN: None     Source Type: Journal    
DOI: 10.1097/PDM.0b013e3181b3aa55     Document Type: Article
Times cited : (21)

References (28)
  • 2
    • 35348819341 scopus 로고    scopus 로고
    • Diagnosis of coccidioidomycosis by culture: Safety considerations, traditional methods, and susceptibility testing
    • Sutton DA. Diagnosis of coccidioidomycosis by culture: safety considerations, traditional methods, and susceptibility testing. Ann NY Acad Sci. 2007;1111:315-325.
    • (2007) Ann. NY Acad. Sci. , vol.1111 , pp. 315-325
    • Sutton, D.A.1
  • 3
    • 0027505613 scopus 로고
    • Ribosomal RNA: A key to phylogeny
    • Olsen GJ, Woese CR. Ribosomal RNA: a key to phylogeny. FASEB J. 1993;7:113-123.
    • (1993) FASEB J. , vol.7 , pp. 113-123
    • Olsen, G.J.1    Woese, C.R.2
  • 4
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • Olsen GJ, Woese CR, Overbeek R. The winds of (evolutionary) change: breathing new life into microbiology. J Bacteriol. 1994;176:1-6.
    • (1994) J. Bacteriol , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    Overbeek, R.3
  • 5
    • 0034911331 scopus 로고    scopus 로고
    • Applications of rRNA targeted oligonucleotide probes in biotechnology
    • Lipski A, Friedrich U, Altendorf K. Applications of rRNA targeted oligonucleotide probes in biotechnology. Appl Microbiol Biotechnol. 2001; 56 (1-2) : 40-57.
    • (2001) Appl. Microbiol. Biotechnol. , vol.56 , Issue.1-2 , pp. 40-57
    • Lipski, A.1    Friedrich, U.2    Altendorf, K.3
  • 6
    • 38549149739 scopus 로고    scopus 로고
    • Thermodynamics of DNA-RNA heteroduplex formation: Effects of locked nucleic acid nucleotides incorporated into the DNA strand
    • Kaur H, Wengel J, Maiti S. Thermodynamics of DNA-RNA heteroduplex formation: effects of locked nucleic acid nucleotides incorporated into the DNA strand. Biochemistry. 2008;47:1218-1227.
    • (2008) Biochemistry , vol.47 , pp. 1218-1227
    • Kaur, H.1    Wengel, J.2    Maiti, S.3
  • 7
    • 0036567147 scopus 로고    scopus 로고
    • Design of antisense oligonucleotides stabilized by locked nucleic acids
    • Kurreck J, Wyszko E, Gillen C, et al. Design of antisense oligonucleotides stabilized by locked nucleic acids. Nucleic Acids Res. 2002;30:1911-1918.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1911-1918
    • Kurreck, J.1    Wyszko, E.2    Gillen, C.3
  • 8
    • 0032561794 scopus 로고    scopus 로고
    • LNA (locked nucleic acid) : An RNA mimic forming exceedingly stable LNA: LNA duplexes
    • Koshkin AA, Nielsen P, Meldgaard M, et al. LNA (locked nucleic acid) : an RNA mimic forming exceedingly stable LNA: LNA duplexes. J Am Chem Soc. 1998;120:13252-13253.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 13252-13253
    • Koshkin, A.A.1    Nielsen, P.2    Meldgaard, M.3
  • 9
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann R, Fuchs BM. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol. 2008;6:339-348.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 10
    • 33747376356 scopus 로고    scopus 로고
    • Improved in situ hybridization efficiency with locked-nucleic-acid- incorporated DNA probes
    • Kubota K, Ohashi A, Imachi H, et al. Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated DNA probes. Appl Environ Microbiol. 2006;72:5311-5317.
    • (2006) Appl. Environ Microbiol. , vol.72 , pp. 5311-5317
    • Kubota, K.1    Ohashi, A.2    Imachi, H.3
  • 11
    • 74549138553 scopus 로고    scopus 로고
    • In situ detection of aspergillus 18S ribosomal RNA sequences using a terminally biotinylated locked nucleic acid (LNA) probe
    • In press
    • Montone KT, Feldman MD. In situ detection of aspergillus 18S ribosomal RNA sequences using a terminally biotinylated locked nucleic acid (LNA) probe. Diag Mol Pathol. In press.
    • Diag Mol. Pathol.
    • Montone, K.T.1    Feldman, M.D.2
  • 12
    • 0034793154 scopus 로고    scopus 로고
    • Rapid identification of dimorphic and yeast-like fungal pathogens using specific DNA probes
    • Lindsley MD, Hurst SF, Iqbal NJ, et al. Rapid identification of dimorphic and yeast-like fungal pathogens using specific DNA probes. J Clin Microbiol. 2001;39:3505-3511.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3505-3511
    • Lindsley, M.D.1    Hurst, S.F.2    Iqbal, N.J.3
  • 13
    • 85008523748 scopus 로고
    • In situ hybridization for ribosomal RNA sequences: A rapid sensitive method for diagnosis of infectious pathogens in anatomic pathology substrates
    • Montone KT. In situ hybridization for ribosomal RNA sequences: a rapid sensitive method for diagnosis of infectious pathogens in anatomic pathology substrates. Acta Histochem Cytochem. 1994;27:601-606.
    • (1994) Acta Histochem Cytochem , vol.27 , pp. 601-606
    • Montone, K.T.1
  • 14
    • 0028796309 scopus 로고
    • Rapid method for detection of Aspergillus 5S ribosomal RNA using a genus-specific oligonucleotide probe
    • Montone KT, Litzky LA. Rapid method for detection of Aspergillus 5S ribosomal RNA using a genus-specific oligonucleotide probe. Am J Clin Pathol. 1995;103:48-51.
    • (1995) Am. J. Clin. Pathol. , vol.103 , pp. 48-51
    • Montone, K.T.1    Litzky, L.A.2
  • 15
    • 0026521590 scopus 로고
    • Colorimetric detection of herpes simplex virus by DNA in situ sandwich hybridization: A rapid, formamide-free, random oligomer-enhanced method
    • Iezzoni JC, Kang JH, Montone KT, et al. Colorimetric detection of herpes simplex virus by DNA in situ sandwich hybridization: a rapid, formamide-free, random oligomer-enhanced method. Nucleic Acids Res. 1992;20:1149-1150.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1149-1150
    • Iezzoni, J.C.1    Kang, J.H.2    Montone, K.T.3
  • 16
    • 0037287131 scopus 로고    scopus 로고
    • In situ hybridization for the differentiation of aspergillus, fusarium, and pseudallescheria species in tissue section
    • Hayden RT, Isotalo PA, Parrett T, et al. In situ hybridization for the differentiation of Aspergillus, Fusarium, and Pseudallescheria species in tissue section. Diagn Mol Pathol. 2003;12:21-26.
    • (2003) Diagn Mol. Pathol. , vol.12 , pp. 21-26
    • Hayden, R.T.1    Isotalo, P.A.2    Parrett, T.3
  • 17
    • 0036114345 scopus 로고    scopus 로고
    • In situ hybridization for the identification of filamentous fungi in tissue section
    • Hayden RT, Qian X, Procop GW, et al. In situ hybridization for the identification of filamentous fungi in tissue section. Diagn Mol Pathol. 2002;11:119-126.
    • (2002) Diagn Mol. Pathol. , vol.11 , pp. 119-126
    • Hayden, R.T.1    Qian, X.2    Procop, G.W.3
  • 18
    • 0035119841 scopus 로고    scopus 로고
    • In situ hybridization for the identification of yeastlike organisms in tissue section
    • Hayden RT, Qian X, Roberts GD, et al. In situ hybridization for the identification of yeastlike organisms in tissue section. Diagn Mol Pathol. 2001;10:15-23.
    • (2001) Diagn Mol. Pathol. , vol.10 , pp. 15-23
    • Hayden, R.T.1    Qian, X.2    Roberts, G.D.3
  • 19
    • 0026321330 scopus 로고
    • Automated molecular pathology: One hour in situ DNA hybridization
    • Park CS, Manahan LJ, Brigati DJ. Automated molecular pathology: one hour in situ DNA hybridization. J Histotechnol. 1991;14:219-229.
    • (1991) J. Histotechnol , vol.14 , pp. 219-229
    • Park, C.S.1    Manahan, L.J.2    Brigati, D.J.3
  • 20
    • 0031471974 scopus 로고    scopus 로고
    • Detection of aspergillus ribosomal RNA using biotinylated oligonucleotide probes
    • Park CS, Kim J, Montone KT. Detection of Aspergillus ribosomal RNA using biotinylated oligonucleotide probes. Diagn Mol Pathol. 1997;6:255-260.
    • (1997) Diagn Mol. Pathol. , vol.6 , pp. 255-260
    • Park, C.S.1    Kim, J.2    Montone, K.T.3
  • 21
    • 0025165458 scopus 로고
    • A novel diagnostic method of pneumocystis carinii. In situ hybridization of ribosomal ribonucleic acid with biotinylated oligonucleotide probes
    • Hayashi Y, Watanabe J, Nakata K, et al. A novel diagnostic method of Pneumocystis carinii. In situ hybridization of ribosomal ribonucleic acid with biotinylated oligonucleotide probes. Lab Invest. 1990;63:576-580.
    • (1990) Lab. Invest. , vol.63 , pp. 576-580
    • Hayashi, Y.1    Watanabe, J.2    Nakata, K.3
  • 22
    • 9544235286 scopus 로고    scopus 로고
    • Simple detection of the 5S ribosomal RNA of Pneumocystis carinii using in situ hybridization
    • Kobayashi M, Urata T, Ikezoe T, et al. Simple detection of the 5S ribosomal RNA of Pneumocystis carinii using in situ hybridization. J. Clin Pathol. 1996;49:712-716.
    • (1996) J. Clin. Pathol. , vol.49 , pp. 712-716
    • Kobayashi, M.1    Urata, T.2    Ikezoe, T.3
  • 23
    • 31344454565 scopus 로고    scopus 로고
    • In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes
    • Kloosterman WP, Wienholds E, De BE, et al. In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes. Nat Methods. 2006;3:27-29.
    • (2006) Nat. Methods , vol.3 , pp. 27-29
    • Kloosterman, W.P.1    Wienholds, E.2    De, B.E.3
  • 24
    • 27144525471 scopus 로고    scopus 로고
    • Dramatically improved RNA in situ hybridization signals using LNA-modified probes
    • Thomsen R, Nielsen PS, Jensen TH. Dramatically improved RNA in situ hybridization signals using LNA-modified probes. RNA. 2005;11:1745-1748.
    • (2005) RNA , vol.11 , pp. 1745-1748
    • Thomsen, R.1    Nielsen, P.S.2    Jensen, T.H.3
  • 25
    • 33744991968 scopus 로고    scopus 로고
    • In situ hybridization in cutaneous deep fungal infections: A valuable diagnostic adjunct to fungal morphology and tissue cultures
    • Abbott JJ, Hamacher KL, Ahmed I. In situ hybridization in cutaneous deep fungal infections: a valuable diagnostic adjunct to fungal morphology and tissue cultures. J Cutan Pathol. 2006;33:426-432.
    • (2006) J. Cutan Pathol. , vol.33 , pp. 426-432
    • Abbott, J.J.1    Hamacher, K.L.2    Ahmed, I.3
  • 26
    • 8644274896 scopus 로고    scopus 로고
    • In situ hybridisation in filamentous fungi using peptide nucleic acid probes
    • Teertstra WR, Lugones LG, Wosten HAB. In situ hybridisation in filamentous fungi using peptide nucleic acid probes. Fungal Genet Biol. 2004;41:1099-1103.
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 1099-1103
    • Teertstra, W.R.1    Lugones, L.G.2    Wosten, H.A.B.3
  • 27
    • 12844260760 scopus 로고    scopus 로고
    • Improved permeabilization protocols for fluorescence in situ hybridization (FISH) of mycolicacid-containing bacteria found in foams
    • Carr EL, Eales K, Soddell J, et al. Improved permeabilization protocols for fluorescence in situ hybridization (FISH) of mycolicacid-containing bacteria found in foams. J Microbiol Meth. 2005;61:47-54.
    • (2005) J. Microbiol. Meth , vol.61 , pp. 47-54
    • Carr, E.L.1    Eales, K.2    Soddell, J.3
  • 28
    • 0031724254 scopus 로고    scopus 로고
    • Misleading manifestations of coccidioides immitis in vivo
    • Kaufman L, Valero G, Padhye AA. Misleading manifestations of Coccidioides immitis in vivo. J Clin Microbiol. 1998;36:3721-3723.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 3721-3723
    • Kaufman, L.1    Valero, G.2    Padhye, A.A.3


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