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Volumn 11, Issue 1, 2010, Pages

Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ANIMAL TISSUE; ARTICLE; CHOLESTEROL SYNTHESIS; CONGENIC STRAIN; CONTROLLED STUDY; CORRELATION ANALYSIS; FEMALE; GENE EXPRESSION REGULATION; GENE FREQUENCY; GENE LOCUS; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOTYPE; INBRED STRAIN; MALE; MOUSE; NONHUMAN; QUANTITATIVE STUDY; QUANTITATIVE TRAIT LOCUS; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; TRANS ISOMER; TRANSCRIPTION REGULATION; ANIMAL; GENE EXPRESSION PROFILING; GENETICS; INBREEDING; METABOLISM; PROBABILITY;

EID: 77953077962     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-361     Document Type: Article
Times cited : (9)

References (33)
  • 1
    • 0042856391 scopus 로고    scopus 로고
    • Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
    • 10.1038/ng1222, 12897782
    • Yvert G, Brem RB, Whittle J, Akey JM, Foss E, Smith EN, Mackelprang R, Kruglyak L. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nat Genet 2003, 35:57-64. 10.1038/ng1222, 12897782.
    • (2003) Nat Genet , vol.35 , pp. 57-64
    • Yvert, G.1    Brem, R.B.2    Whittle, J.3    Akey, J.M.4    Foss, E.5    Smith, E.N.6    Mackelprang, R.7    Kruglyak, L.8
  • 2
    • 38849093314 scopus 로고    scopus 로고
    • The influence of genetic variation on gene expression
    • 10.1101/gr.6981507, 18063559
    • Williams R, Chan E, Cowley M, Little P. The influence of genetic variation on gene expression. Genome Research 2007, 17:1707-1716. 10.1101/gr.6981507, 18063559.
    • (2007) Genome Research , vol.17 , pp. 1707-1716
    • Williams, R.1    Chan, E.2    Cowley, M.3    Little, P.4
  • 3
    • 26444519157 scopus 로고    scopus 로고
    • The quantitative genetics of transcription
    • 10.1016/j.tig.2005.08.010, 16154229
    • Gibson G, Weir B. The quantitative genetics of transcription. Trends Genet 2005, 21:616-623. 10.1016/j.tig.2005.08.010, 16154229.
    • (2005) Trends Genet , vol.21 , pp. 616-623
    • Gibson, G.1    Weir, B.2
  • 5
    • 18144405733 scopus 로고    scopus 로고
    • The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    • 10.1038/ng1554, 15852004
    • Denver DR, Morris K, Streelman JT, Kim SK, Lynch M, Thomas WK. The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans. Nat Genet 2005, 37:544-548. 10.1038/ng1554, 15852004.
    • (2005) Nat Genet , vol.37 , pp. 544-548
    • Denver, D.R.1    Morris, K.2    Streelman, J.T.3    Kim, S.K.4    Lynch, M.5    Thomas, W.K.6
  • 6
    • 20644454887 scopus 로고    scopus 로고
    • Genetical genomics in humans and model organisms
    • 10.1016/j.tig.2005.05.004, 15908034
    • de Koning D-J, Haley CS. Genetical genomics in humans and model organisms. Trends Genet 2005, 21:377-381. 10.1016/j.tig.2005.05.004, 15908034.
    • (2005) Trends Genet , vol.21 , pp. 377-381
    • de Koning, D.-.J.1    Haley, C.S.2
  • 8
    • 0033867820 scopus 로고    scopus 로고
    • Fine mapping of trypanosomiasis resistance loci in murine advanced intercross lines
    • 10.1007/s003350010133, 10920233
    • Iraqi F, Clapcott SJ, Kumari P, Haley CS, Kemp SJ, Teale AJ. Fine mapping of trypanosomiasis resistance loci in murine advanced intercross lines. Mamm Genome 2000, 11:645-648. 10.1007/s003350010133, 10920233.
    • (2000) Mamm Genome , vol.11 , pp. 645-648
    • Iraqi, F.1    Clapcott, S.J.2    Kumari, P.3    Haley, C.S.4    Kemp, S.J.5    Teale, A.J.6
  • 9
    • 0030960856 scopus 로고    scopus 로고
    • Localization of genes controlling resistance to trypanosomiasis in mice
    • 10.1038/ng0697-194, 9171834
    • Kemp SJ, Iraqi F, Darvasi A, Soller M, Teale AJ. Localization of genes controlling resistance to trypanosomiasis in mice. Nat Genet 1997, 16:194-196. 10.1038/ng0697-194, 9171834.
    • (1997) Nat Genet , vol.16 , pp. 194-196
    • Kemp, S.J.1    Iraqi, F.2    Darvasi, A.3    Soller, M.4    Teale, A.J.5
  • 14
    • 24644460573 scopus 로고    scopus 로고
    • A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips
    • Liu X, Milo M, Lawrence ND, Rattray M. A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips. Bioinf 2005, 21:3637-3644.
    • (2005) Bioinf , vol.21 , pp. 3637-3644
    • Liu, X.1    Milo, M.2    Lawrence, N.D.3    Rattray, M.4
  • 15
    • 33748644662 scopus 로고    scopus 로고
    • Probe-level measurement error improves accuracy in detecting differential gene expression
    • Liu X, Milo M, Lawrence ND, Rattray M. Probe-level measurement error improves accuracy in detecting differential gene expression. Bioinf 2006, 22:2107-2113.
    • (2006) Bioinf , vol.22 , pp. 2107-2113
    • Liu, X.1    Milo, M.2    Lawrence, N.D.3    Rattray, M.4
  • 16
    • 77954310718 scopus 로고    scopus 로고
    • Perlegen Mouse SNP browser
    • Perlegen Mouse SNP browser. , http://mouse.cs.ucla.edu/perlegen/
  • 17
    • 0003437299 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.6
    • Felsenstein J. PHYLIP (Phylogeny Inference Package) version 3.6. 2005,
    • (2005)
    • Felsenstein, J.1
  • 18
    • 77949623074 scopus 로고    scopus 로고
    • Quantitative trait loci for resistance to Heligmosomoides bakeri and associated immunological and pathological traits in mice: comparison of loci on chromosomes 5, 8 and 11 in F2 and F6/7 inter-cross lines of mice
    • 10.1017/S0031182009991028, 19925689
    • Behnke JM, Menge DM, Nagda S, Noyes H, Iraqi FA, Kemp SJ, Mugambi RJM, Baker RL, Wakelin D, Gibson JP. Quantitative trait loci for resistance to Heligmosomoides bakeri and associated immunological and pathological traits in mice: comparison of loci on chromosomes 5, 8 and 11 in F2 and F6/7 inter-cross lines of mice. Parasitology 2010, 137:311-320. 10.1017/S0031182009991028, 19925689.
    • (2010) Parasitology , vol.137 , pp. 311-320
    • Behnke, J.M.1    Menge, D.M.2    Nagda, S.3    Noyes, H.4    Iraqi, F.A.5    Kemp, S.J.6    Mugambi, R.J.M.7    Baker, R.L.8    Wakelin, D.9    Gibson, J.P.10
  • 19
    • 38649137338 scopus 로고    scopus 로고
    • Sequence polymorphisms cause many false cis eQTLs
    • 10.1371/journal.pone.0000622, 1906859, 17637838
    • Alberts R, Terpstra P, Li Y, Breitling R, Nap J, Jansen R. Sequence polymorphisms cause many false cis eQTLs. PLoS One 2007, 2:e622. 10.1371/journal.pone.0000622, 1906859, 17637838.
    • (2007) PLoS One , vol.2
    • Alberts, R.1    Terpstra, P.2    Li, Y.3    Breitling, R.4    Nap, J.5    Jansen, R.6
  • 20
    • 34447505156 scopus 로고    scopus 로고
    • DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies
    • 10.1186/gb-2007-8-2-r25, 1852412, 17324278
    • Hovatta I, Zapala MA, Broide RS, Schadt EE, Libiger O, Schork NJ, Lockhart DJ, Barlow C. DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies. Genome Biol 2007, 8:R25. 10.1186/gb-2007-8-2-r25, 1852412, 17324278.
    • (2007) Genome Biol , vol.8
    • Hovatta, I.1    Zapala, M.A.2    Broide, R.S.3    Schadt, E.E.4    Libiger, O.5    Schork, N.J.6    Lockhart, D.J.7    Barlow, C.8
  • 21
    • 72749086098 scopus 로고    scopus 로고
    • Evolutionary conservation and adaptation in the mechanism that regulates SREBP action: what a long, strange tRIP it's been
    • 10.1101/gad.1854309, 2779761, 19933148
    • Osborne TF, Espenshade PJ. Evolutionary conservation and adaptation in the mechanism that regulates SREBP action: what a long, strange tRIP it's been. Genes Dev 2009, 23:2578-2591. 10.1101/gad.1854309, 2779761, 19933148.
    • (2009) Genes Dev , vol.23 , pp. 2578-2591
    • Osborne, T.F.1    Espenshade, P.J.2
  • 23
    • 0346752261 scopus 로고    scopus 로고
    • High cholesterol may protect against infections and atherosclerosis
    • 10.1093/qjmed/hcg150, 14631060
    • Ravnskov U. High cholesterol may protect against infections and atherosclerosis. QJM 2003, 96:927-934. 10.1093/qjmed/hcg150, 14631060.
    • (2003) QJM , vol.96 , pp. 927-934
    • Ravnskov, U.1
  • 24
    • 35549002789 scopus 로고    scopus 로고
    • TNF-alpha interferes with lipid homeostasis and activates acute and proatherogenic processes
    • 10.1152/physiolgenomics.00264.2006, 17566076
    • Fon Tacer K, Kuzman D, Seliskar M, Pompon D, Rozman D. TNF-alpha interferes with lipid homeostasis and activates acute and proatherogenic processes. Physiol Genomics 2007, 31:216-227. 10.1152/physiolgenomics.00264.2006, 17566076.
    • (2007) Physiol Genomics , vol.31 , pp. 216-227
    • Fon Tacer, K.1    Kuzman, D.2    Seliskar, M.3    Pompon, D.4    Rozman, D.5
  • 25
    • 0034804783 scopus 로고    scopus 로고
    • Sterol regulatory element-binding proteins (SREBPs): transcriptional regulators of lipid synthetic genes
    • 10.1016/S0163-7827(01)00010-8, 11591434
    • Shimano H. Sterol regulatory element-binding proteins (SREBPs): transcriptional regulators of lipid synthetic genes. Prog Lipid Res 2001, 40:439-452. 10.1016/S0163-7827(01)00010-8, 11591434.
    • (2001) Prog Lipid Res , vol.40 , pp. 439-452
    • Shimano, H.1
  • 26
    • 3543022156 scopus 로고    scopus 로고
    • Mouse striatal transcriptome analysis: effects of oral self-administration of alcohol
    • 10.1016/j.alcohol.2004.02.005, 15282116
    • Saito M, Szakall I, Toth R, Kovacs KM, Oros M, Prasad VVTS, Blumenberg M, Vadasz C. Mouse striatal transcriptome analysis: effects of oral self-administration of alcohol. Alcohol 2004, 32:223-241. 10.1016/j.alcohol.2004.02.005, 15282116.
    • (2004) Alcohol , vol.32 , pp. 223-241
    • Saito, M.1    Szakall, I.2    Toth, R.3    Kovacs, K.M.4    Oros, M.5    Prasad, V.V.T.S.6    Blumenberg, M.7    Vadasz, C.8
  • 30
    • 34548804918 scopus 로고    scopus 로고
    • A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis
    • 10.1093/nar/gkm623, 2018629, 17709344
    • Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A. A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis. Nucleic Acids Res 2007, 35:5625-5633. 10.1093/nar/gkm623, 2018629, 17709344.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5625-5633
    • Fisher, P.1    Hedeler, C.2    Wolstencroft, K.3    Hulme, H.4    Noyes, H.5    Kemp, S.6    Stevens, R.7    Brass, A.8
  • 31
    • 0037378953 scopus 로고    scopus 로고
    • Different genetic control of cutaneous and visceral disease after Leishmania major infection in mice
    • 10.1128/IAI.71.4.2041-2046.2003, 152088, 12654824
    • Vladimirov V, Badalova J, Svobodova M, Havelkova H, Hart AA, Blazkova H, Demant P, Lipoldova M. Different genetic control of cutaneous and visceral disease after Leishmania major infection in mice. Infect Immun 2003, 71:2041-2046. 10.1128/IAI.71.4.2041-2046.2003, 152088, 12654824.
    • (2003) Infect Immun , vol.71 , pp. 2041-2046
    • Vladimirov, V.1    Badalova, J.2    Svobodova, M.3    Havelkova, H.4    Hart, A.A.5    Blazkova, H.6    Demant, P.7    Lipoldova, M.8
  • 33
    • 48249123867 scopus 로고    scopus 로고
    • Genome-Wide Occupancy of SREBP1 and Its Partners NFY and SP1 Reveals Novel Functional Roles and Combinatorial Regulation of Distinct Classes of Genes
    • Reed BD, Charos AE, Szekely AM, Weissman SM, Snyder M. Genome-Wide Occupancy of SREBP1 and Its Partners NFY and SP1 Reveals Novel Functional Roles and Combinatorial Regulation of Distinct Classes of Genes. PLoS Genetics 2008, 4.
    • (2008) PLoS Genetics , pp. 4
    • Reed, B.D.1    Charos, A.E.2    Szekely, A.M.3    Weissman, S.M.4    Snyder, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.