메뉴 건너뛰기




Volumn 76, Issue 11, 2010, Pages 3420-3426

Partial chromosome sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ANALYSIS; BIOCHEMISTRY; ELECTROPHORESIS; GENE ENCODING; LIPIDS; METABOLISM; VIRUSES;

EID: 77953032143     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02954-09     Document Type: Article
Times cited : (50)

References (56)
  • 2
    • 0141703358 scopus 로고    scopus 로고
    • Glucose and trehalose PTS permeases of Spiroplasma citri probably share a single IIA domain, enabling the Spiroplasma to adapt quickly to carbohydrate changes in its environment
    • André, A., W. Maccheroni, F. Doignon, M. Garnier, and J. Renaudin. 2003. Glucose and trehalose PTS permeases of Spiroplasma citri probably share a single IIA domain, enabling the spiroplasma to adapt quickly to carbohydrate changes in its environment. Microbiology 149:2687-2696.
    • (2003) Microbiology , vol.149 , pp. 2687-2696
    • André, A.1    Maccheroni, W.2    Doignon, F.3    Garnier, M.4    Renaudin, J.5
  • 3
    • 11144337147 scopus 로고    scopus 로고
    • Sugar import and phytopathogenicity of Spiroplasma citriglucose and fructose play distinct roles
    • André, A., M. Maucourt, A. Moing, D. Rolin, and J. Renaudin. 2005. Sugar import and phytopathogenicity of Spiroplasma citri: glucose and fructose play distinct roles. Mol. Plant Microbe Interact. 18:32-42.
    • (2005) Mol. Plant Microbe Interact , vol.18 , pp. 32-42
    • André, A.1    Maucourt, M.2    Moing, A.3    Rolin, D.4    Renaudin, J.5
  • 5
    • 0026553672 scopus 로고
    • Frosite - A dictionary of sites and patterns in proteins
    • Bairoch, A. 1992. Frosite - a dictionary of sites and patterns in proteins. Nucleic Acids Res. 20:2013-2018.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2013-2018
    • Bairoch, A.1
  • 6
    • 0346494849 scopus 로고    scopus 로고
    • MolliGen, a database dedicated to the comparative genomics of Mollicutes
    • Barré, A., A. deDaruvar, and A. Blanchard. 2004. MblliGen, a database dedicated-the comparative genomics of Mollicutes. Nucleic Acids Res. 32: D307-D310. (Pubitemid 38081664)
    • (2004) Nucleic Acids Research , vol.32 , Issue.DATABASE ISS.
    • Barre, A.1    DeDaruvar, A.2    Blanchard, A.3
  • 7
    • 0030020694 scopus 로고    scopus 로고
    • Spiroplasma citri virus SpV1: Characterization of viral sequences present in the spiroplasma host chromosome
    • Bébéar, C. M., P. Aullo, J. M. Bové, and J. Renaudin. 1996. Spiroplasma citri virus SpV1: characterization of viral sequences present in the spiroplasma host chromosome. Curr. Microbiol. 32:134-140.
    • (1996) Curr. Microbiol. , vol.32 , pp. 134-140
    • Bébéar, C.M.1    Aullo, P.2    Bové, J.M.3    Renaudin, J.4
  • 9
    • 33748797680 scopus 로고    scopus 로고
    • Plasmid pSci6 from Spiroplasma citri GII-3 confers insect transmissibility to the non-transmissible strain S. citri 44
    • DOI 10.1099/mic.0.29085-0
    • Berho, N., S. Duret, J. L. Danet, and J. Renaudin. 2006. Plasmid pSci6 from Spiroplasma citri GII-3 confers insect transmissibility to the non-transmissible strain S. citri 44. Microbiology 152:2703-2716. (Pubitemid 44405095)
    • (2006) Microbiology , vol.152 , Issue.9 , pp. 2703-2716
    • Berho, N.1    Duret, S.2    Danet, J.-L.3    Renaudin, J.4
  • 10
    • 3242769322 scopus 로고    scopus 로고
    • Disruption of a gene predicted to encode a solute binding protein of an ABC transporter reduces transmission of Spiroplasma citri by the leafhopper Circulifer haematoceps
    • DOI 10.1128/AEM.70.7.3960-3967.2004
    • Boutareaud, A., J. L. Danet, M. Garnier, and C. Saillard. 2004. Disruption of a gene predicted to encode a solute binding protein of an ABC transporter reduces transmission of Spiroplasma citri by the leafhopper Circulifer haematoceps. Appl. Environ. Microbiol. 70:3960-3967. (Pubitemid 38969735)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.7 , pp. 3960-3967
    • Boutareaud, A.1    Danet, J.L.2    Garnier, M.3    Saillard, C.4
  • 11
    • 0141701190 scopus 로고    scopus 로고
    • Spiroplasma citria plant pathogenic mollicute: Relationships with its two hosts, the plant and the leafhopper vector
    • Bové, J. M., J. Renaudin, C. Saillard, X. Foissac, and M. Garnier. 2003. Spiroplasma citri, a plant pathogenic mollicute: relationships with its two hosts, the plant and the leafhopper vector. Annu. Rev. Phytopathol. 41:483500.
    • (2003) Annu. Rev. Phytopathol , vol.41 , pp. 483500
    • Bové, J.M.1    Renaudin, J.2    Saillard, C.3    Foissac, X.4    Garnier, M.5
  • 12
    • 55549083175 scopus 로고    scopus 로고
    • Characterizing the replication and stability regions of Spiroplasma citri Plasmids identifies a novel replication protein and expands the genetic toolbox for plant-pathogenic spiroplasmas
    • Breton, M., S. Duret, N. Arricau-Bouvery, L. Beven, and J. Renaudin. 2008. Characterizing the replication and stability regions of Spiroplasma citri Plasmids identifies a novel replication protein and expands the genetic toolbox for plant-pathogenic spiroplasmas. Microbiology 154:3232-3244.
    • (2008) Microbiology , vol.154 , pp. 3232-3244
    • Breton, M.1    Duret, S.2    Arricau-Bouvery, N.3    Beven, L.4    Renaudin, J.5
  • 13
    • 0001046022 scopus 로고
    • Ecology of Spiroplasma citri
    • In R. F. Whitcomb and J. G. Tully (ed.), Academic Press, New York, NY
    • Calavan, E. C., and J. M. Bové. 1989. Ecology of Spiroplasma citri, p. 425487. In R. F. Whitcomb and J. G. Tully (ed.), The mycoplasmas, vol. 5. Academic Press, New York, NY.
    • (1989) The Mycoplasmas , vol.5 , pp. 425487
    • Calavan, E.C.1    Bové, J.M.2
  • 14
    • 0026730309 scopus 로고
    • Spiroplasma citri UGG and UGA tryptophan codons: Sequence of the two tryptophanyl-tRNAs and organization of the corresponding genes
    • Citti, C., L. Marechal-Drouard, C. Saillard, J. H. Weil, and J. M. Bové. 1992. Spiroplasma citri UGG and UGA tryptophan codons: sequence of the two tryptophanyl-tRNAs and organization of the corresponding genes. J. Bacteriol. 174:6471-6478.
    • (1992) J. Bacteriol. , vol.174 , pp. 6471-6478
    • Citti, C.1    Marechal-Drouard, L.2    Saillard, C.3    Weil, J.H.4    Bové, J.M.5
  • 15
    • 0015793151 scopus 로고
    • Morphology, ultrastructure and bacteriophage infection of the helical mycoplasma-like organism (Spiroplasma citri gen. nov., sp. nov.) cultured from stubborn disease of citrus
    • Cole, R. M., J. G. Tully, T. J. Popkin, and J. M. Bové. 1973. Morphology, ultrastructure and bacteriophage infection of the helical mycoplasma-like organism (Spiroplasma citri gen. nov., sp. nov.) cultured from "stubborn" disease of citrus. J. Bacteriol. 115:367-386.
    • (1973) J. Bacteriol. , vol.115 , pp. 367-386
    • Cole, R.M.1    Tully, J.G.2    Popkin, T.J.3    Bové, J.M.4
  • 16
    • 0031812904 scopus 로고    scopus 로고
    • The ProDom database of protein domain families
    • DOI 10.1093/nar/26.1.323
    • Corpet, F., J. Gauzy, and D. Kahn. 1998. The ProDom database of protein domain families. Nucleic Acids Res. 26:323-326. (Pubitemid 28291551)
    • (1998) Nucleic Acids Research , vol.26 , Issue.1 , pp. 323-326
    • Corpet, F.1    Gouzy, J.2    Kahn, D.3
  • 18
    • 23844490466 scopus 로고    scopus 로고
    • Specific gene targeting in Spiroplasma citriimproved vectors and production of unmarked mutations using site-specific recombination
    • Duret, S., A. André, and J. Renaudin. 2005. Specific gene targeting in Spiroplasma citri: improved vectors and production of unmarked mutations using site-specific recombination. Microbiology 151:2793-2803.
    • (2005) Microbiology , vol.151 , pp. 2793-2803
    • Duret, S.1    André, A.2    Renaudin, J.3
  • 19
    • 0142104346 scopus 로고    scopus 로고
    • Spiralin is not essential for helicity, motility, or pathogenicity but is required for efficient transmission of spiroplasma citri by its leafhopper vector circulifer haematoceps
    • DOI 10.1128/AEM.69.10.6225-6234.2003
    • Duret, S., N. Berho, J. L. Danet, M. Garnier, and J. Renaudin. 2003. Spiralin is not essential for helicity, motility, or pathogenicity but is required for efficient transmission of Spiroplasma citri by its leafhopper vector Circulifer haematoceps. Appl. Environ. Microbiol. 69:6225-6234. (Pubitemid 37280348)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.10 , pp. 6225-6234
    • Duret, S.1    Berho, N.2    Danet, J.-L.3    Garnier, M.4    Renaudin, J.5
  • 20
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Evring, B., and P. Green. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Evring, B.1    Green, P.2
  • 21
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. i Accuracy assessment
    • Ewing, B., L. Hillier, M. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res. , Issue.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 22
    • 0031789793 scopus 로고    scopus 로고
    • The phytopathogenic mollicute-insect vector interface: A closer look
    • Fletcher, J., A. Wayadande, U. Melcher, and F. Ye. 1998. The phytopathogenic mollicute-insect vector interface: a closer look. Phytopathology 88: 1351-1358.
    • (1998) Phytopathology , vol.88 , pp. 1351-1358
    • Fletcher, J.1    Wayadande, A.2    Melcher, U.3    Ye, F.4
  • 23
    • 0030958854 scopus 로고    scopus 로고
    • Mutagenesis by insertion of Tn4001 into the genome of Spiroplasma citri: Characterization of mutants affected in plant pathogenicity and transmission to the plant by the leafhopper vector Circulifer haematoceps
    • Foissac,X.,J.L.Danet,C.Saillard,P.Gaurivaud,F.Laigret,C.Pare,andJ.M. Bové.1997.MutagenesisbyinsertionofTn4001intothegenomeofSpiroplasmacitri: characterizationofmutantsaffectedinplantpathogenicityandtransmission- theplantbytheleafhoppervectorCirculiferhaematoceps.Mol.PlantMicrobeInteract.10: 454-461.(Pubitemid27204368)
    • (1997) Molecular Plant-Microbe Interactions , vol.10 , Issue.4 , pp. 454-461
    • Foissac, X.1    Danet, J.L.2    Saillard, C.3    Gaurivaud, P.4    Laigret, F.5    Pare, C.6    Bove, J.M.7
  • 25
    • 0034636698 scopus 로고    scopus 로고
    • Fructose utilization and pathogenicity of Spiroplasma citricharacterization of the fructose Operon
    • Gaurivaud, P., F. Laigret, M. Garnier, and J. M. Bové. 2000. Fructose utilization and pathogenicity of Spiroplasma citri: characterization of the fructose Operon. Gene 252:61-69.
    • (2000) Gene , vol.252 , pp. 61-69
    • Gaurivaud, P.1    Laigret, F.2    Garnier, M.3    Bové, J.M.4
  • 26
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon,D.,C.Abajian,andP.Green.1998.Consed: agraphicaltoolforsequencefinishing.GenomeRes.8:195-202.(Pubitemid28177231)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 28
    • 17844401514 scopus 로고    scopus 로고
    • Spiroplasma citri spiralin acts in vitro as a lectin binding to glycoproteins from its insect vector Circulifer haematoceps
    • DOI 10.1094/PHYTO-95-0541
    • Killiny, N., M. Castroviejo, and C. Saillard. 2005. Spiroplasma citri spiralin acts in vitro as a lectin binding to glycoproteins from its insect vector Circulifer haematoceps. Phytopathology 95:541-548. (Pubitemid 40589236)
    • (2005) Phytopathology , vol.95 , Issue.5 , pp. 541-548
    • Killiny, N.1    Castroviejo, M.2    Saillard, C.3
  • 29
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh, A., B. Larsson, G. von Heijne, and E. L. L. Sonnhammer. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305:567-580.
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 31
    • 0003315950 scopus 로고
    • The relationship of Spiroplasma citri and Circulifer tenellus
    • Liu, H. Y., D. J. Gumpf, G. N. Oldfield, and E. C. Calavan. 1983. The relationship of Spiroplasma citri and Circulifer tenellus. Phytopathology 73: 585-590.
    • (1983) Phytopathology , vol.73 , pp. 585-590
    • Liu, H.Y.1    Gumpf, D.J.2    Oldfield, G.N.3    Calavan, E.C.4
  • 32
    • 0343297318 scopus 로고
    • Transmission of Spiroplasma citri by Circulifer tenellus
    • Liu, H. Y., D. J. Gumpf, G. N. Oldfield, and E. C. Calavan. 1983. Transmission of Spiroplasma citri by Circulifer tenellus. Phytopathology 73:582-585.
    • (1983) Phytopathology , vol.73 , pp. 582-585
    • Liu, H.Y.1    Gumpf, D.J.2    Oldfield, G.N.3    Calavan, E.C.4
  • 33
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 34
    • 0029845613 scopus 로고    scopus 로고
    • Characterization of the recA gene regions of Spiroplasma citri and Spiroplasma melliferum
    • Marais, A., J. M. Bové, and J. Renaudin. 1996. Characterization of the recA gene regions of Spiroplasma citri and Spiroplasma melliferum. J. Bacteriol. 178:7003-7009.
    • (1996) J. Bacteriol. , vol.178 , pp. 7003-7009
    • Marais, A.1    Bové, J.M.2    Renaudin, J.3
  • 35
    • 0032836045 scopus 로고    scopus 로고
    • Mechanisms of spiroplasma genome variation associated with SpV1-like viral DNA inferred from sequence comparisons
    • Melcher, U., Y. Sha, F. Ye, and J. Fletcher. 1999. Mechanisms of spiroplasma genome variation associated with SpV1-like viral DNA inferred from sequence comparisons. Microb. Comp. Genomics 4:29-46.
    • (1999) Microb. Comp. Genomics , vol.4 , pp. 29-46
    • Melcher, U.1    Sha, Y.2    Ye, F.3    Fletcher, J.4
  • 38
    • 0028003137 scopus 로고
    • Spvl and Spv4, spiroplasma viruses with circular, single-stranded-DNA genomes, and their contribution to the molecular biology of spiroplasmas
    • Renaudin, J., and J. M. Bové. 1994. Spvl and Spv4, spiroplasma viruses with circular, single-stranded-DNA genomes, and their contribution to the molecular biology of spiroplasmas. Adv. Virus Res. 44:429-463.
    • (1994) Adv. Virus Res. , vol.44 , pp. 429-463
    • Renaudin, J.1    Bové, J.M.2
  • 42
    • 0043122995 scopus 로고    scopus 로고
    • FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences
    • DOI 10.1093/nar/gkg610
    • Schiex, T., J. Gouzy, A. Moisan, and Y. de Oliveira. 2003. FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences. Nucleic Acids Res. 31:3738-3741. (Pubitemid 37442236)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3738-3741
    • Schiex, T.1    Gouzy, J.2    Moisan, A.3    De Oliveira, Y.4
  • 43
    • 0034020125 scopus 로고    scopus 로고
    • Common elements of spiroplasma plectroviruses revealed by nucleotide sequence of SVTS2
    • DOI 10.1023/A:1008108106916
    • Sha, Y., U. Melcher, R. E. Davis, and J. Fletcher. 2000. Common elements of spiroplasma plectroviruses revealed by nucleotide sequence of SVTS2. Virus Genes 20:47-56. (Pubitemid 30168917)
    • (2000) Virus Genes , vol.20 , Issue.1 , pp. 47-56
    • Sha, Y.1    Melcher, U.2    Davis, R.E.3    Fletcher, J.4
  • 44
    • 0028783690 scopus 로고
    • Resistance of Spiroplasma citri lines to the virus SVTS2 is associated with integration of viral DNA sequences into host chromosomal and extrachromosomal DNA
    • Sha, Y. H., U. Melcher, R. E. Davis, and J. Fletcher. 1995. Resistance of Spiroplasma citri lines to the virus SVTS2 is associated with integration of viral DNA sequences into host chromosomal and extrachromosomal DNA. Appl. Environ. Microbiol. 61:3950-3959.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3950-3959
    • Sha, Y.H.1    Melcher, U.2    Davis, R.E.3    Fletcher, J.4
  • 46
    • 36849045236 scopus 로고    scopus 로고
    • Evolution of mollicutes: Down a bumpy road with twists and turns
    • Sirand-Pugnet, P., C. Citti, A. Barre, and A. Blanchard. 2007. Evolution of mollicutes: down a bumpy road with twists and turns. Res. Microbiol. 158: 754-766.
    • (2007) Res. Microbiol. , vol.158 , pp. 754-766
    • Sirand-Pugnet, P.1    Citti, C.2    Barre, A.3    Blanchard, A.4
  • 47
    • 44349099865 scopus 로고    scopus 로고
    • Comparative genome analysis of Candidatus Phytoplasma australiense (subgroup tuf-Australia I; rp-A) and Ca. Phytoplasma asteris strains OY-M. and AY-WB
    • Tran-Nguyen, L. T. T., M. Kube, B. Schneider, R. Reinhardt, and K. S. Gibb. 2008. Comparative genome analysis of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M. and AY-WB. J. Bacteriol. 190:3979-3991.
    • (2008) J. Bacteriol. , vol.190 , pp. 3979-3991
    • Tran-Nguyen, L.T.T.1    Kube, M.2    Schneider, B.3    Reinhardt, R.4    Gibb, K.S.5
  • 48
    • 0017352412 scopus 로고
    • Pathogenic mycoplasmas: Cultivation and vertebrate pathogenicity of a new spiroplasma
    • Tully, J. G., R. F. Whitcomb, H. F. Clark, and D. L. Williamson. 1977. Pathogenic mycoplasmas: cultivation and vertebrate pathogenicity of a new spiroplasma. Science 195:892-894.
    • (1977) Science , vol.195 , pp. 892-894
    • Tully, J.G.1    Whitcomb, R.F.2    Clark, H.F.3    Williamson, D.L.4
  • 50
    • 50149119906 scopus 로고    scopus 로고
    • Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution
    • Wei, W., R. E. Davis, R. Jomantiene, and Y. Zhao. 2008. Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution. Proc. Natl. Acad. Sci. U. S. A. 106:11827-11832.
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 11827-11832
    • Wei, W.1    Davis, R.E.2    Jomantiene, R.3    Zhao, Y.4
  • 52
    • 0028335681 scopus 로고
    • A physical and genomic map of the prokaryote Spiroplasma melliferum and its comparison with the Spiroplasma citri map
    • Ye, F. C., F. Laigret, and J. M. Bové. 1994. A physical and genomic map of the prokaryote Spiroplasma melliferum and its comparison with the Spiroplasma citri map. C. R. Acad. Sci. III 317:392-398.
    • (1994) C. R. Acad. Sci. III , vol.317 , pp. 392-398
    • Ye, F.C.1    Laigret, F.2    Bové, J.M.3
  • 53
    • 0028839534 scopus 로고
    • Chromosomal heterogeneity among various strains of Spiroplasma citri
    • Ye, F. C., F. Laigret, P. Carle, and J. M. Bové. 1995. Chromosomal heterogeneity among various strains of Spiroplasma citri. Int. J. Syst. Bacteriol. 45:729-734.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 729-734
    • Ye, F.C.1    Laigret, F.2    Carle, P.3    Bové, J.M.4
  • 55
    • 0028242585 scopus 로고
    • Cloning and sequencing of the replication origin (One) of the Spiroplasma citri chromosome and construction of autonomously replicating artificial plasmids
    • Ye, F. C., J. Renaudin, J. M. Bové, and F. Laigret. 1994. Cloning and sequencing of the replication origin (One) of the Spiroplasma citri chromosome and construction of autonomously replicating artificial plasmids. Curr. Microbiol. 29:23-29.
    • (1994) Curr. Microbiol. , vol.29 , pp. 23-29
    • Ye, F.C.1    Renaudin, J.2    Bové, J.M.3    Laigret, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.