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Volumn 167, Issue 1, 2010, Pages 45-52

Development and optimisation of a duplex real-time reverse transcription quantitative PCR assay targeting the VP7 and NS2 genes of African horse sickness virus

Author keywords

African horse sickness virus; Duplex; NS2 gene; Real time quantitative RT PCR; VP7 gene

Indexed keywords

DOUBLE STRANDED RNA; NONSTRUCTURAL PROTEIN 2; PROTEIN VP7;

EID: 77953025518     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.03.009     Document Type: Article
Times cited : (38)

References (45)
  • 1
    • 54549104804 scopus 로고    scopus 로고
    • Real-time fluorogenic reverse transcription polymerase chain reaction assay for detection of African horse sickness virus
    • Agüero M., Gómez-Tejedor C., Angeles C.M., Rubio C., Romero E., Jiménez-Clavero A. Real-time fluorogenic reverse transcription polymerase chain reaction assay for detection of African horse sickness virus. J. Vet. Diagn. Invest. 2008, 20:325-328.
    • (2008) J. Vet. Diagn. Invest. , vol.20 , pp. 325-328
    • Agüero, M.1    Gómez-Tejedor, C.2    Angeles, C.M.3    Rubio, C.4    Romero, E.5    Jiménez-Clavero, A.6
  • 2
    • 0039346125 scopus 로고
    • The 1944 epizootic of horsesickness in the Middle East
    • Alexander R.A. The 1944 epizootic of horsesickness in the Middle East. Onderstepoort J. Vet. Sci. Anim. Ind. 1948, 23:77-92.
    • (1948) Onderstepoort J. Vet. Sci. Anim. Ind. , vol.23 , pp. 77-92
    • Alexander, R.A.1
  • 3
    • 0024961371 scopus 로고
    • African horse sickness in Saudi Arabia
    • Anderson E.C., Mellor P., Hamblin C. African horse sickness in Saudi Arabia. Vet. Rec. 1989, 125:489.
    • (1989) Vet. Rec. , vol.125 , pp. 489
    • Anderson, E.C.1    Mellor, P.2    Hamblin, C.3
  • 4
    • 65149089171 scopus 로고    scopus 로고
    • PCR detection of African horse sickness virus serogroup based on genome segment three sequence analysis
    • Aradaib I.E. PCR detection of African horse sickness virus serogroup based on genome segment three sequence analysis. J. Virol. Methods 2009, 159:1-5.
    • (2009) J. Virol. Methods , vol.159 , pp. 1-5
    • Aradaib, I.E.1
  • 5
    • 31544436302 scopus 로고    scopus 로고
    • Short communication: a simple and rapid method for detection of African horse sickness virus serogroup in cell cultures using RT-PCR
    • Aradaib I.E., Mohemmed M.E., Sarr J.A., Idris S.H., Ali N.O., Majid A.A., Karrar A.E. Short communication: a simple and rapid method for detection of African horse sickness virus serogroup in cell cultures using RT-PCR. Vet. Res. Commun. 2006, 30:319-324.
    • (2006) Vet. Res. Commun. , vol.30 , pp. 319-324
    • Aradaib, I.E.1    Mohemmed, M.E.2    Sarr, J.A.3    Idris, S.H.4    Ali, N.O.5    Majid, A.A.6    Karrar, A.E.7
  • 7
    • 77349122777 scopus 로고    scopus 로고
    • Development and evaluation of real-time PCR assays for the quantitative detection of Babesia caballi and Theileria equi infections in horses from South Africa
    • Bhoora R., Quan M., Franssen L., Butler C.M., Van der Kolk J.H., Guthrie A.J., Zweygarth E., Jongejan F., Collins N.E. Development and evaluation of real-time PCR assays for the quantitative detection of Babesia caballi and Theileria equi infections in horses from South Africa. Vet. Parasitol. 2010, 10.1016/j.vetpar.2009.11.011.
    • (2010) Vet. Parasitol.
    • Bhoora, R.1    Quan, M.2    Franssen, L.3    Butler, C.M.4    Van der Kolk, J.H.5    Guthrie, A.J.6    Zweygarth, E.7    Jongejan, F.8    Collins, N.E.9
  • 8
    • 0032016106 scopus 로고    scopus 로고
    • Detection of African horsesickness virus and discrimination between two equine orbivirus serogroups by reverse transcription polymerase chain reaction
    • Bremer C.W., Viljoen G.J. Detection of African horsesickness virus and discrimination between two equine orbivirus serogroups by reverse transcription polymerase chain reaction. Onderstepoort J. Vet. Res. 1998, 65:1-8.
    • (1998) Onderstepoort J. Vet. Res. , vol.65 , pp. 1-8
    • Bremer, C.W.1    Viljoen, G.J.2
  • 9
    • 0014089801 scopus 로고
    • Epizootiologia de la peste equina en españa
    • Díaz-Montilla R., Paños Martí P. Epizootiologia de la peste equina en españa. Bull. OIE 1967, 68:705-714.
    • (1967) Bull. OIE , vol.68 , pp. 705-714
    • Díaz-Montilla, R.1    Paños Martí, P.2
  • 11
    • 53349153174 scopus 로고    scopus 로고
    • Global change: impact, management, risk approach and health measures-the case of Europe
    • Dufour B., Moutou F., Hattenberger A.M., Rodhain F. Global change: impact, management, risk approach and health measures-the case of Europe. Rev. Sci. Tech. 2008, 27:529-550.
    • (2008) Rev. Sci. Tech. , vol.27 , pp. 529-550
    • Dufour, B.1    Moutou, F.2    Hattenberger, A.M.3    Rodhain, F.4
  • 12
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B., Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8:186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 13
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8:175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 15
    • 74949089983 scopus 로고    scopus 로고
    • Assessing the impact of climate change on vector-borne viruses in the EU through the elicitation of expert opinion
    • Gale P., Brouwer A., Ramnial V., Kelly L., Kosmider R., Fooks A.R., Snary E.L. Assessing the impact of climate change on vector-borne viruses in the EU through the elicitation of expert opinion. Epidemiol. Infect. 2010, 138:214-225.
    • (2010) Epidemiol. Infect. , vol.138 , pp. 214-225
    • Gale, P.1    Brouwer, A.2    Ramnial, V.3    Kelly, L.4    Kosmider, R.5    Fooks, A.R.6    Snary, E.L.7
  • 16
    • 77953022360 scopus 로고    scopus 로고
    • African horse sickness
    • Equine Veterinary Journal Ltd., Ely, T.S. Mair, R.E. Hutchinson (Eds.)
    • Guthrie A.J., Quan M. African horse sickness. Infectious Diseases of the Horse 2009, 72-82. Equine Veterinary Journal Ltd., Ely. 1st ed. T.S. Mair, R.E. Hutchinson (Eds.).
    • (2009) Infectious Diseases of the Horse , pp. 72-82
    • Guthrie, A.J.1    Quan, M.2
  • 17
    • 67649306196 scopus 로고    scopus 로고
    • Protective immunization of horses with a recombinant canarypox virus vectored vaccine co-expressing genes encoding the outer capsid proteins of African horse sickness virus
    • Guthrie A.J., Quan M., Lourens C.W., Audonnet J.C., Minke J.M., Yao J., He L., Nordgren R., Gardner I.A., MacLachlan N.J. Protective immunization of horses with a recombinant canarypox virus vectored vaccine co-expressing genes encoding the outer capsid proteins of African horse sickness virus. Vaccine 2009, 27:4434-4438.
    • (2009) Vaccine , vol.27 , pp. 4434-4438
    • Guthrie, A.J.1    Quan, M.2    Lourens, C.W.3    Audonnet, J.C.4    Minke, J.M.5    Yao, J.6    He, L.7    Nordgren, R.8    Gardner, I.A.9    MacLachlan, N.J.10
  • 18
    • 0348027982 scopus 로고
    • The 1960 epizootic of African horsesickness in the Middle East and S.W
    • Howell P.G. The 1960 epizootic of African horsesickness in the Middle East and S.W. Asia. J. S. Afr. Vet. Med. Assoc. 1960, 31:329-334.
    • (1960) Asia. J. S. Afr. Vet. Med. Assoc. , vol.31 , pp. 329-334
    • Howell, P.G.1
  • 19
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 20
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K., Kuma K., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005, 33:511-518.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 21
    • 0001995743 scopus 로고
    • A review on aetiology and pathogeny of African horsesickness
    • Mirchamsy H., Hazrati A. A review on aetiology and pathogeny of African horsesickness. Arch. Inst. Razi. 1973, 25:23-46.
    • (1973) Arch. Inst. Razi. , vol.25 , pp. 23-46
    • Mirchamsy, H.1    Hazrati, A.2
  • 22
    • 0028414551 scopus 로고
    • Detection of African horsesickness virus by reverse transcriptase polymerase chain reaction (RT-PCR) using primers for segment 5 (NS1 gene)
    • Mizukoshi N., Sakamoto K., Iwata A., Ueda S., Kamada M., Fukusho A. Detection of African horsesickness virus by reverse transcriptase polymerase chain reaction (RT-PCR) using primers for segment 5 (NS1 gene). J. Vet. Med. Sci. 1994, 56:347-352.
    • (1994) J. Vet. Med. Sci. , vol.56 , pp. 347-352
    • Mizukoshi, N.1    Sakamoto, K.2    Iwata, A.3    Ueda, S.4    Kamada, M.5    Fukusho, A.6
  • 23
    • 0029145436 scopus 로고
    • Detection of African horse sickness viruses by dot-blot hybridization using a digoxigenin-labelled probe
    • Moulay S., Zientara S., Sailleau C., Cruciere C. Detection of African horse sickness viruses by dot-blot hybridization using a digoxigenin-labelled probe. Mol. Cell Probes 1995, 9:233-237.
    • (1995) Mol. Cell Probes , vol.9 , pp. 233-237
    • Moulay, S.1    Zientara, S.2    Sailleau, C.3    Cruciere, C.4
  • 24
    • 77953025245 scopus 로고    scopus 로고
    • Appendix XXVIII: report of the meeting of the OIE ad hoc group on diseases/pathogenic agent notification on a new OIE list of terrestrial animal disease
    • OIE, OIE
    • OIE Appendix XXVIII: report of the meeting of the OIE ad hoc group on diseases/pathogenic agent notification on a new OIE list of terrestrial animal disease. Report of OIE Terrestrial Animal Health Standards Commission/January 2005 2005, OIE, pp. 495-515.
    • (2005) Report of OIE Terrestrial Animal Health Standards Commission/January 2005 , pp. 495-515
  • 26
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 29
    • 0039938315 scopus 로고
    • African horse sickness
    • Reid N.R. African horse sickness. Br. Vet. J. 1961, 118:137-142.
    • (1961) Br. Vet. J. , vol.118 , pp. 137-142
    • Reid, N.R.1
  • 33
    • 0031136415 scopus 로고    scopus 로고
    • Detection of African horse sickness virus in the blood of experimentally infected horses: comparison of virus isolation and a PCR assay
    • Sailleau C., Moulay S., Cruciere C., Laegreid W.W., Zientara S. Detection of African horse sickness virus in the blood of experimentally infected horses: comparison of virus isolation and a PCR assay. Res. Vet. Sci. 1997, 62:229-232.
    • (1997) Res. Vet. Sci. , vol.62 , pp. 229-232
    • Sailleau, C.1    Moulay, S.2    Cruciere, C.3    Laegreid, W.W.4    Zientara, S.5
  • 34
    • 0028139855 scopus 로고
    • Rapid detection of African horsesickness virus by the reverse transcriptase polymerase chain reaction (RT-PCR) using the amplimer for segment 3 (VP3 gene)
    • Sakamoto K., Punyahotra R., Mizukoshi N., Ueda S., Imagawa H., Sugiura T., Kamada M., Fukusho A. Rapid detection of African horsesickness virus by the reverse transcriptase polymerase chain reaction (RT-PCR) using the amplimer for segment 3 (VP3 gene). Arch. Virol. 1994, 136:87-97.
    • (1994) Arch. Virol. , vol.136 , pp. 87-97
    • Sakamoto, K.1    Punyahotra, R.2    Mizukoshi, N.3    Ueda, S.4    Imagawa, H.5    Sugiura, T.6    Kamada, M.7    Fukusho, A.8
  • 35
    • 45549099349 scopus 로고    scopus 로고
    • Development and evaluation of a real-time polymerase chain reaction test for the detection of Theileria parva infections in Cape buffalo (Syncerus caffer) and cattle
    • Sibeko K.P., Oosthuizen M.C., Collins N.E., Geysen D., Rambritch N.E., Latif A.A., Groeneveld H.T., Potgieter F.T., Coetzer J.A. Development and evaluation of a real-time polymerase chain reaction test for the detection of Theileria parva infections in Cape buffalo (Syncerus caffer) and cattle. Vet. Parasitol. 2008, 155:37-48.
    • (2008) Vet. Parasitol. , vol.155 , pp. 37-48
    • Sibeko, K.P.1    Oosthuizen, M.C.2    Collins, N.E.3    Geysen, D.4    Rambritch, N.E.5    Latif, A.A.6    Groeneveld, H.T.7    Potgieter, F.T.8    Coetzer, J.A.9
  • 36
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R. The Staden sequence analysis package. Mol. Biotechnol. 1996, 5:233-241.
    • (1996) Mol. Biotechnol. , vol.5 , pp. 233-241
    • Staden, R.1
  • 39
    • 77953024465 scopus 로고    scopus 로고
    • PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4b10, Sinauer Associates, Sunderland, MA
    • Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4b10 2003, Sinauer Associates, Sunderland, MA.
    • (2003)
    • Swofford, D.L.1
  • 41
    • 0027768015 scopus 로고
    • Diagnosis and molecular epidemiology of the African horsesickness virus by the polymerase chain reaction and restriction patterns
    • Zientara S., Sailleau C., Moulay S., Plateau E., Cruciere C. Diagnosis and molecular epidemiology of the African horsesickness virus by the polymerase chain reaction and restriction patterns. Ann. Rech. Vet. 1993, 24:385-395.
    • (1993) Ann. Rech. Vet. , vol.24 , pp. 385-395
    • Zientara, S.1    Sailleau, C.2    Moulay, S.3    Plateau, E.4    Cruciere, C.5
  • 42
    • 0028090747 scopus 로고
    • Diagnosis of the African horse sickness virus serotype 4 by a one-tube, one manipulation RT-PCR reaction from infected organs
    • Zientara S., Sailleau C., Moulay S., Cruciere C. Diagnosis of the African horse sickness virus serotype 4 by a one-tube, one manipulation RT-PCR reaction from infected organs. J. Virol. Methods 1994, 46:179-188.
    • (1994) J. Virol. Methods , vol.46 , pp. 179-188
    • Zientara, S.1    Sailleau, C.2    Moulay, S.3    Cruciere, C.4
  • 43
    • 0028793344 scopus 로고
    • Differentiation of African horse sickness viruses by polymerase chain reaction and segments 10 restriction patterns
    • Zientara S., Sailleau C., Moulay S., Cruciere C. Differentiation of African horse sickness viruses by polymerase chain reaction and segments 10 restriction patterns. Vet. Microbiol. 1995, 47:365-375.
    • (1995) Vet. Microbiol. , vol.47 , pp. 365-375
    • Zientara, S.1    Sailleau, C.2    Moulay, S.3    Cruciere, C.4
  • 44
    • 0029078104 scopus 로고
    • Application of the polymerase chain reaction to the detection of African horse sickness viruses
    • Zientara S., Sailleau C., Moulay S., Wade-Evans A., Cruciere C. Application of the polymerase chain reaction to the detection of African horse sickness viruses. J. Virol. Methods 1995, 53:47-54.
    • (1995) J. Virol. Methods , vol.53 , pp. 47-54
    • Zientara, S.1    Sailleau, C.2    Moulay, S.3    Wade-Evans, A.4    Cruciere, C.5
  • 45
    • 0031605007 scopus 로고    scopus 로고
    • Use of reverse transcriptase-polymerase chain reaction (RT-PCR) and dot-blot hybridisation for the detection and identification of African horse sickness virus nucleic acids
    • Zientara S., Sailleau C., Moulay S., Cruciere C., el-Harrak M., Laegreid W.W., Hamblin C. Use of reverse transcriptase-polymerase chain reaction (RT-PCR) and dot-blot hybridisation for the detection and identification of African horse sickness virus nucleic acids. Arch. Virol. Suppl. 1998, 14:317-327.
    • (1998) Arch. Virol. Suppl. , vol.14 , pp. 317-327
    • Zientara, S.1    Sailleau, C.2    Moulay, S.3    Cruciere, C.4    el-Harrak, M.5    Laegreid, W.W.6    Hamblin, C.7


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