Molecular epidemiology of the African horse sickness virus S10 gene

Journal of General Virology

Volumn 89, Issue 5, 2008, Pages 1159-1168

  Quan, Melvyn ^a   van Vuuren, Moritz ^a   Howell, Peter G ^a   Groenewald, Daleen ^a   Guthrie, Alan J ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; NONSTRUCTURAL PROTEIN 3; RNA SMALL SEGMENT 10; VIRUS RNA; VIRUS PROTEIN;

AFRICA; AFRICAN HORSE SICKNESS VIRUS; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BLOOD SAMPLING; BLUETONGUE ORBIVIRUS; CONTROLLED STUDY; EASTERN EQUINE ENCEPHALOMYELITIS VIRUS; EPIDEMIC; GENE CLUSTER; GENETIC DATABASE; HORSE DISEASE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA EXTRACTION; RNA SEQUENCE; SEROTYPE; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION; ANIMAL; ANIMAL ANATOMY; BLOOD; CLASSIFICATION; DNA SEQUENCE; EPIDEMIOLOGY; GENETIC SELECTION; GENETICS; GENOTYPE; HORSE; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; SEQUENCE HOMOLOGY; SEROTYPING; SOUTH AFRICA; VIROLOGY;

AFRICAN HORSESICKNESS VIRUS; BLUETONGUE VIRUS; EQUINE ENCEPHALOSIS VIRUS;

AFRICAN HORSE SICKNESS; AFRICAN HORSE SICKNESS VIRUS; ANIMAL STRUCTURES; ANIMALS; BLOOD; DISEASE OUTBREAKS; EPIDEMIOLOGY, MOLECULAR; GENOTYPE; HORSES; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SELECTION (GENETICS); SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEROTYPING; SOUTH AFRICA; VIRAL PROTEINS;

EID: 44649186481     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.83502-0     Document Type: Article

References (44)

1. Bansal, O. B., Stokes, A., Bansal, A., Bishop, D. & Roy, P. (1998). Membrane organization of bluetongue virus nonstructural glycoprotein NS3. J Virol 72, 3362-3369.
2. Biebricher, C. K. & Eigen, M. (2006). What is a quasispecies? Curr Top Microbiol Immunol 299, 1-31.
3. Burrage, T. G., Tevejo, R., Stone-Marschat, M. & Laegreid, W. W. (1993). Neutralizing epitopes of African horsesickness virus serotype 4 are located on VP2. Virology 196, 799-803.
4. Coetzer, J. A. W. & Guthrie, A. J. (2004). African horse sickness. In Infectious Diseases of Livestock, 2nd edn, pp. 1231-1246. Edited by J. A. W. Coetzer & R. C. Tustin. Cape Town: Oxford University Press Southern Africa.
5. Domingo, E., Sabo, D., Taniguchi, T. & Weissmann, C. (1978). Nucleotide sequence heterogeneity of an RNA phage population. Cell 13, 735-744.
6. DuToit, R. M. (1944). The transmission of blue-tongue and horse sickness by Culicoides. Onderstepoort J Vet Sci Anim Ind 19, 7-16.
7. Ewing, B. & Green, P. (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8, 186-194.
8. Ewing, B., Hillier, L., Wendl, M. C. & Green, P. (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8, 175-185.
9. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
10. Hamblin, C., Graham, S. D., Anderson, E. C. & Crowther, J. R. (1990). A competitive ELISA for the detection of group-specific antibodies to African horse sickness virus. Epidemiol Infect 104, 303-312.
11. Huelsenbeck, J. P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
12. Hyatt, A. D., Gould, A. R., Coupar, B. & Eaton, B. T. (1991). Localization of the non-structural protein NS3 in bluetongue virus-infected cells. J Gen Virol 72, 2263-2267.
13. Hyatt A. D., Zhao, Y. & Roy, P. (1993). Release of bluetongue virus-like particles from insect cells is mediated by BTV nonstructural protein NS3/NS3A. Virology 193, 592-603.
14. Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30, 3059-3066.
15. Katoh, K., Kuma, K., Toh, H. & Miyata, T. (2005). MAFFF version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33, 511-518.
16. Kumar, S., Tamura, K. & Nei, M. (1994). MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput Appl Biosci 10, 189-191.
17. Kyte, J. & Doolittle, R. F. (1982). A simple method for displaying the hydropathic character of a protein. J Mol Biol 157, 105-132.
18. Martin, L. A., Meyer, A. J., O'Hara, R. S., Fu, H., Mellor, P. S., Knowles, N. J. & Mertens, P. P. (1998). Phylogenetic analysis of African horse sickness virus segment 10: sequence variation, virulence characteristics and cell exit. Arch Virol Suppl 14, 281-293.
19. Mertens, P. P., Brown, F. & Sangar, D. V. (1984). Assignment of the genome segments of bluetongue virus type 1 to the proteins which they encode. Virology 135, 207-217.
20. Nei, M. & Gojobori, T. (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3, 418-426.
21. Nylander, J. A. A. (2004). MrModeltest v2. Program distributed by the author.
22. O'Hara, R. S., Meyer, A. J., Burroughs, J. N., Pullen, L., Martin, L. A. & Mertens, P. P. (1998). Development of a mouse model system, coding assignments and identification of the genome segments controlling virulence of African horse sickness virus serotypes 3 and 8. Arch Virol Suppl 14, 259-279.
23. Persson, B. & Argos, P. (1994). Prediction of transmembrane segments in proteins utilising multiple sequence alignments. J Mol Biol 237, 182-192.
24. Porterfield, J. S. (1960). A simple plaque-inhibition test for the study of arthropod-borne viruses. Bull World Health Organ 22, 373-380.
25. Posada, D. & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
26. Purse, B. V., Mellor, P. S., Rogers, D. J., Samuel, A. R., Mertens, P. P. & Baylis, M. (2005). Climate change and the recent emergence of bluetongue in Europe. Nat Rev Microbiol 3, 171-181.
27. Rice, P., Longden, I. & Bleasby, A. (2000). EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16, 276-277.
28. Ronquist, F. & Huelsenbeck, J. P. (2003). MRBAYES3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
29. Sailleau, C., Moulay, S. & Zientara, S. (1997). Nucleotide sequence comparison of the segments S10 of the nine African horsesickness virus serotypes. Arch. Virol 142, 965-978.
30. Sinclair, M. (2006). The epidemiology of an African horse sickness outbreak in the Western Cape Province of South Africa in 2004. MSc thesis. University of Pretoria.
31. Staden, R. (1996). The Staden sequence analysis package. Mol Biotechnol 5, 233-241.
32. Staden, R., Beal, K. F. & Bonfield, J. K. (2000). The Staden package, 1998. Methods Mol Biol 132, 115-130.
33. Stoltz, M. A., van der Merwe, C. F., Coetzee, J. & Huismans, H. (1996). Subcellular localization of the nonstructural protein NS3 of African horsesickness virus. Onderstepoort J Vet Res 63, 57-61.
34. Stone-Marschat M. A., Moss, S. R., Burrage, T. G., Barber, M. L., Roy, P. & Laegreid, W. W. (1996). Immunization with VP2 is sufficient for protection against lethal challenge with African horsesickness virus type 4. Virology 220, 219-222.
35. Swofford, D. L. (2003). PAUP*: Phylogenetic Analysis Using Parsιmony (*and other methods), version 4b10. Sunderland, MA: Sinauer Associates.
36. Tamura, K., Dudley, J, Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
37. van Niekerk M., Smit, C. C., Fick, W. C., van Staden, V. & Huismans, H. (2001a). Membrane association of African horsesickness virus non-structural protein NS3 determines its cytotoxicity. Virology 279, 499-508.
38. van Niekerk M., van Staden, V., Van Dijk, A. A. & Huismans, H. (2001b). Variation of African horsesickness virus nonstructural protein NS3 in southern Africa. J Gen Virol 82, 149-158.
39. van Niekerk, M., Freeman, M., Paweska, J. T., Howell, P. G., Guthrie, A. J., Potgieter, A. C., van Staden, V. & Huismans, H. (2003). Variation in the NS3 gene and protein in South African isolates of bluetongue and equine encephalosis viruses. J Gen Virol 84, 581-590.
40. van Staden, V. & Huismans, H. (1991). A comparison of the genes which encode non-structural protein NS3 of different orbiviruses. J Gen Virol 72, 1073-1079.
41. van Staden, V., Stoltz, M. A. & Huismans, H. (1995). Expression of nonstructural protein NS3 of African horsesickness virus (AHSV): evidence for a cytotoxic effect of NS3 in insect cells, and characterization of the gene products in AHSV infected Vero cells. Arch Virol 140, 289-306.
42. Wirblich, C., Bhattacharya, B. & Roy, P. (2006). Nonstructural protein 3 of bluetongue virus assists virus release by recruiting ESCRT-1 protein Tsg101. J Virol 80, 460-473.
43. Wu, X., Chen, S. Y., Iwata, H., Compans, R. W. & Roy, P. (1992). Multiple glycoproteins synthesized by the smallest RNA segment (S10) of bluetongue virus. J Virol 66, 7104-7112.
44. Xia, X. & Xie, Z. (2001). DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92, 371-373.