Development of a rapid and comprehensive proteomics-based arboviruses detection system

Journal of Virological Methods

Volumn 167, Issue 1, 2010, Pages 31-36

  Okamoto, Kenta ^a   Endo, Yushirou ^a   Inoue, Shingo ^a   Nabeshima, Takeshi ^a   Nga, Phan Thi ^b   Guillermo, Posadas H ^a   Yu, Fuxun ^a   Loan, Do Phuong ^b   Trang, Bui Minh ^b   Natividad, Filipinas F ^c   Hasebe, Futoshi ^a   Morita, Kouichi ^a  

^a NAGASAKI UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF HYGIENE AND EPIDEMIOLOGY   (Viet Nam)

^c ST LUKE S MEDICAL CENTER   (Philippines)

Author keywords

Aarbovirus; LC MS; Mass; Proteomics

Indexed keywords

ANIMAL CELL; ARBOVIRUS; ARTICLE; CELL LINE; CONTROLLED STUDY; DENGUE VIRUS; ELECTROSPRAY MASS SPECTROMETRY; GENE AMPLIFICATION; INSECT CELL; JAPANESE ENCEPHALITIS VIRUS; LIQUID CHROMATOGRAPHY; MOSQUITO; NONHUMAN; PRIORITY JOURNAL; PROTEOMICS; ROSS RIVER ALPHA VIRUS; TANDEM MASS SPECTROMETRY; VIRUS IDENTIFICATION; VIRUS PURIFICATION; VIRUS STRAIN; YELLOW FEVER FLAVIVIRUS;

AEDES; ANIMALS; ARBOVIRUSES; CELL LINE; CERCOPITHECUS AETHIOPS; CHROMATOGRAPHY, LIQUID; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; VIRAL PROTEINS; VIROLOGY; VIRUS CULTIVATION;

ARBOVIRUS; BANNA VIRUS; YUNNAN ORBIVIRUS;

EID: 77953021340     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.03.006     Document Type: Article

References (27)

1. Angelini, R., Finarelli, A.C., Angelini, P., Po, C., Petropulacos, K., Macini, P., Fiorentini, C., Fortuna, C., Venturi, G., Romi, R., Majori, G., Nicoletti, L., Rezza, G., Cassone, A., 2007. An outbreak of chikungunya fever in the province of Ravenna, Italy. Euro Surveill 12, E070906 1.
2. Asnis D.S., Conetta R., Teixeira A.A., Waldman G., Sampson B.A. The West Nile Virus outbreak of 1999 in New York: the Flushing Hospital experience. Clin. Infect. Dis. 2000, 30:413-418.
3. Attoui H., Mohd Jaafar F., Belhouchet M., Aldrovandi N., Tao S., Chen B., Liang G., Tesh R.B., de Micco P., de Lamballerie X. Yunnan orbivirus, a new orbivirus species isolated from Culex tritaeniorhynchus mosquitoes in China. J. Gen. Virol. 2005, 86:3409-3417.
4. Blyn L.B., Hall T.A., Libby B., Ranken R., Sampath R., Rudnick K., Moradi E., Desai A., Metzgar D., Russell K.L., Freed N.E., Balansay M., Broderick M.P., Osuna M.A., Hofstadler S.A., Ecker D.J. Rapid detection and molecular serotyping of adenovirus by use of PCR followed by electrospray ionization mass spectrometry. J. Clin. Microbiol. 2008, 46:644-651.
5. Bryant J.E., Crabtree M.B., Nam V.S., Yen N.T., Duc H.M., Miller B.R. Isolation of arboviruses from mosquitoes collected in northern Vietnam. Am. J. Trop. Med. Hyg. 2005, 73:470-473.
6. Duffy M.R., Chen T.H., Hancock W.T., Powers A.M., Kool J.L., Lanciotti R.S., Pretrick M., Marfel M., Holzbauer S., Dubray C., Guillaumot L., Griggs A., Bel M., Lambert A.J., Laven J., Kosoy O., Panella A., Biggerstaff B.J., Fischer M., Hayes E.B. Zika virus outbreak on Yap Island, Federated states of Micronesia. N. Engl. J. Med. 2009, 360:2536-2543.
7. Farfan-Ale J.A., Lorono-Pino M.A., Garcia-Rejon J.E., Hovav E., Powers A.M., Lin M., Dorman K.S., Platt K.B., Bartholomay L.C., Soto V., Beaty B.J., Lanciotti R.S., Blitvich B.J. Detection of RNA from a novel West Nile-like virus and high prevalence of an insect-specific flavivirus in mosquitoes in the Yucatan Peninsula of Mexico. Am. J. Trop. Med. Hyg. 2009, 80:85-95.
8. Hsieh Y.H., Chen C.W. Turning points, reproduction number, and impact of climatological events for multi-wave dengue outbreaks. Trop. Med. Int. Health 2009, 14:628-638.
9. Hubalek Z. Mosquito-borne viruses in Europe. Parasitol. Res. 2008, 103(Suppl. 1):S29-43.
10. Huhtamo E., Putkuri N., Kurkela S., Manni T., Vaheri A., Vapalahti O., Uzcategui N.Y. Characterization of a novel flavivirus from mosquitoes in Northern Europe related to mosquito-borne flaviviruses of the tropics. J. Virol. 2009, 83:9532-9540.
11. Jayakeerthi R.S., Potula R.V., Srinivasan S., Badrinath S. Shell vial culture assay for the rapid diagnosis of Japanese encephalitis. West Nile and Dengue-2 viral encephalitis. Virol. J. 2006, 3:2.
12. Karabatsos N. International Catalogue of Arthropod-borne viruses 1985, American Society for Tropical Medicine and Hygiene, San Antonio (TX). 3rd ed.
13. Lanciotti R.S. Molecular amplification assays for the detection of flaviviruses. Adv. Virus Res. 2003, 61:67-99.
14. Nabeshima T., Thi Nga P., Guillermo P., Parquet Mdel C., Yu F., Thanh Thuy N., Minh Trang B., Tran Hien N., Sinh Nam V., Inoue S., Hasebe F., Morita K. Isolation and molecular characterization of Banna virus from mosquitoes, Vietnam. Emerg. Infect. Dis. 2008, 14:1276-1279.
15. Nakamura S., Maeda N., Miron I.M., Yoh M., Izutsu K., Kataoka C., Honda T., Yasunaga T., Nakaya T., Kawai J., Hayashizaki Y., Horii T., Iida T. Metagenomic diagnosis of bacterial infections. Emerg. Infect. Dis. 2008, 14:1784-1786.
16. Nakamura S., Yang C.S., Sakon N., Ueda M., Tougan T., Yamashita A., Goto N., Takahashi K., Yasunaga T., Ikuta K., Mizutani T., Okamoto Y., Tagami M., Morita R., Maeda N., Kawai J., Hayashizaki Y., Nagai Y., Horii T., Iida T., Nakaya T. Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach. PLoS One 2009, 4:e4219.
17. Parida M., Horioke K., Ishida H., Dash P.K., Saxena P., Jana A.M., Islam M.A., Inoue S., Hosaka N., Morita K. Rapid detection and differentiation of dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay. J. Clin. Microbiol. 2005, 43:2895-2903.
18. Parida M., Posadas G., Inoue S., Hasebe F., Morita K. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J. Clin. Microbiol. 2004, 42:257-263.
19. Parida M.M., Santhosh S.R., Dash P.K., Tripathi N.K., Lakshmi V., Mamidi N., Shrivastva A., Gupta N., Saxena P., Babu J.P., Rao P.V., Morita K. Rapid and real-time detection of Chikungunya virus by reverse transcription loop-mediated isothermal amplification assay. J. Clin. Microbiol. 2007, 45:351-357.
20. Parida M.M., Santhosh S.R., Dash P.K., Tripathi N.K., Saxena P., Ambuj S., Sahni A.K., Lakshmana Rao P.V., Morita K. Development and evaluation of reverse transcription-loop-mediated isothermal amplification assay for rapid and real-time detection of Japanese encephalitis virus. J. Clin. Microbiol. 2006, 44:4172-4178.
21. Perkins D.N., Pappin D.J., Creasy D.M., Cottrell J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20:3551-3567.
22. Peyrefitte C.N., Boubis L., Coudrier D., Bouloy M., Grandadam M., Tolou H.J., Plumet S. Real-time reverse-transcription loop-mediated isothermal amplification for rapid detection of rift valley Fever virus. J. Clin. Microbiol. 2008, 46:3653-3659.
23. Posey D.L., O'Rourke T., Roehrig J.T., Lanciotti R.S., Weinberg M., Maloney S. O'Nyong-nyong fever in West Africa. Am. J. Trop. Med. Hyg. 2005, 73:32.
24. Presely J.F., Brown D.T. The proteolytic cleavage of PE2 to envelope glycoprotein E2 is not strictly required for the maturation of Sindbis virus. J. Virol. 1989, 63:1975-1980.
25. Salminen A., Wahlberg J.M., Lobigs M., Liljestrom P., Garoff H. Membrane fusion process of Semliki Forest virus. II: Cleavage-dependent reorganization of the spike protein complex controls virus entry. J. Cell. Biol. 1992, 116:349-357.
26. Sampath R., Russell K.L., Massire C., Eshoo M.W., Harpin V., Blyn L.B., Melton R., Ivy C., Pennella T., Li F., Levene H., Hall T.A., Libby B., Fan N., Walcott D.J., Ranken R., Pear M., Schink A., Gutierrez J., Drader J., Moore D., Metzgar D., Addington L., Rothman R., Gaydos C.A., Yang S., St George K., Fuschino M.E., Dean A.B., Stallknecht D.E., Goekjian G., Yingst S., Monteville M., Saad M.D., Whitehouse C.A., Baldwin C., Rudnick K.H., Hofstadler S.A., Lemon S.M., Ecker D.J. Global surveillance of emerging Influenza virus genotypes by mass spectrometry. PLoS One 2007, 2:e489.
27. Toriniwa H., Komiya T. Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification. Microbiol. Immunol. 2006, 50:379-387.