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Volumn 161, Issue 3, 2010, Pages 208-218

Proteomic study of linuron and 3,4-dichloroaniline degradation by Variovorax sp. WDL1: Evidence for the involvement of an aniline dioxygenase-related multicomponent protein

Author keywords

3,4 Dichloroaniline; Aniline dioxygenase; Biodegradation; Linuron; Proteome; Variovorax

Indexed keywords

3,4 DICHLOROANILINE; ANILINE DIOXYGENASE; CARBON; DIOXYGENASE; LINURON; NITROGEN; UNCLASSIFIED DRUG;

EID: 77952953559     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2010.01.010     Document Type: Article
Times cited : (38)

References (44)
  • 1
    • 33846782985 scopus 로고    scopus 로고
    • Probing the molecular determinants of aniline dioxygenase substrate specificity by saturation mutagenesis
    • Ang E.L., Obbard J.P., Zhao H. Probing the molecular determinants of aniline dioxygenase substrate specificity by saturation mutagenesis. FEBS J. 2007, 274:928-939.
    • (2007) FEBS J. , vol.274 , pp. 928-939
    • Ang, E.L.1    Obbard, J.P.2    Zhao, H.3
  • 2
    • 35449001190 scopus 로고    scopus 로고
    • Isolation and characterization of diuron-degrading bacteria from lotic surface water
    • Batisson I., Pesce S., Besse-Hoggan P., Sancelme M., Bohatier J. Isolation and characterization of diuron-degrading bacteria from lotic surface water. Microb. Ecol. 2007, 54:761-770.
    • (2007) Microb. Ecol. , vol.54 , pp. 761-770
    • Batisson, I.1    Pesce, S.2    Besse-Hoggan, P.3    Sancelme, M.4    Bohatier, J.5
  • 3
    • 0035289309 scopus 로고    scopus 로고
    • Genetic diversity among the 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae
    • Boon N., Goris J., De Vos P., Verstraete W., Top E.M. Genetic diversity among the 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae. Appl. Environ. Microbiol. 2001, 67:1107-1115.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1107-1115
    • Boon, N.1    Goris, J.2    De Vos, P.3    Verstraete, W.4    Top, E.M.5
  • 4
    • 42149128431 scopus 로고    scopus 로고
    • Architecture and spatial organization in a triple-species bacterial biofilm synergistically degrading the phenylurea herbicide linuron
    • Breugelmans P., Barken K.B., Tolker-Nielsen T., Hofkens J., Dejonghe W., Springael D. Architecture and spatial organization in a triple-species bacterial biofilm synergistically degrading the phenylurea herbicide linuron. FEMS Microbiol. Ecol. 2008, 64:271-282.
    • (2008) FEMS Microbiol. Ecol. , vol.64 , pp. 271-282
    • Breugelmans, P.1    Barken, K.B.2    Tolker-Nielsen, T.3    Hofkens, J.4    Dejonghe, W.5    Springael, D.6
  • 5
    • 35948948729 scopus 로고    scopus 로고
    • Characterization of novel linuron-mineralizing bacterial consortia enriched from long-term linuron-treated agricultural soils
    • Breugelmans P., D'Huys P.-J., De Mot R., Springael D. Characterization of novel linuron-mineralizing bacterial consortia enriched from long-term linuron-treated agricultural soils. FEMS Microbiol. Ecol. 2007, 62:374-385.
    • (2007) FEMS Microbiol. Ecol. , vol.62 , pp. 374-385
    • Breugelmans, P.1    D'Huys, P.-J.2    De Mot, R.3    Springael, D.4
  • 7
    • 0032479058 scopus 로고    scopus 로고
    • C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic archaea
    • Chistoserdova L., Vorholt J.A., Thauer R.K., Lidstrom M.E. C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic archaea. Science 1998, 281:99-102.
    • (1998) Science , vol.281 , pp. 99-102
    • Chistoserdova, L.1    Vorholt, J.A.2    Thauer, R.K.3    Lidstrom, M.E.4
  • 8
    • 0032954349 scopus 로고    scopus 로고
    • Rapid biodegradation of diuron and other phenylurea herbicides by a soil bacterium
    • Cullington J.E., Walker A. Rapid biodegradation of diuron and other phenylurea herbicides by a soil bacterium. Soil Biol. Biochem. 1999, 31:677-686.
    • (1999) Soil Biol. Biochem. , vol.31 , pp. 677-686
    • Cullington, J.E.1    Walker, A.2
  • 9
    • 77952953999 scopus 로고    scopus 로고
    • The importance of genetic and metabolic interactions between bacteria in the degradation of herbicides. Ph.D. thesis, University of Ghent, Belgium.
    • Dejonghe, W., 2003. The importance of genetic and metabolic interactions between bacteria in the degradation of herbicides. Ph.D. thesis, University of Ghent, Belgium.
    • (2003)
    • Dejonghe, W.1
  • 11
    • 34547168773 scopus 로고    scopus 로고
    • Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins
    • De Mot R., Schoofs G., Nagy I. Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins. Arch. Microbiol. 2007, 188:257-271.
    • (2007) Arch. Microbiol. , vol.188 , pp. 257-271
    • De Mot, R.1    Schoofs, G.2    Nagy, I.3
  • 12
    • 0024368544 scopus 로고
    • Application of two-dimensional protein analysis for strain fingerprinting and mutant analysis of Azospirillum species
    • De Mot R., Vanderleyden J. Application of two-dimensional protein analysis for strain fingerprinting and mutant analysis of Azospirillum species. Can. J. Microbiol. 1989, 35:960-967.
    • (1989) Can. J. Microbiol. , vol.35 , pp. 960-967
    • De Mot, R.1    Vanderleyden, J.2
  • 13
    • 33744951971 scopus 로고    scopus 로고
    • Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene
    • Domínguez-Cuevas P., González-Pastor J.-E., Marqués S., Ramos J.-L., de Lorenzo V. Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J. Biol. Chem. 2006, 281:11981-11991.
    • (2006) J. Biol. Chem. , vol.281 , pp. 11981-11991
    • Domínguez-Cuevas, P.1    González-Pastor, J.-E.2    Marqués, S.3    Ramos, J.-L.4    de Lorenzo, V.5
  • 14
    • 0015309321 scopus 로고
    • Identification of N,O-dimethylhydroxylamine as a microbial degradation product of the herbicide, linuron
    • Engelhardt G., Wallnöfer P.R., Plapp R. Identification of N,O-dimethylhydroxylamine as a microbial degradation product of the herbicide, linuron. Appl. Microbiol. 1972, 23:664-666.
    • (1972) Appl. Microbiol. , vol.23 , pp. 664-666
    • Engelhardt, G.1    Wallnöfer, P.R.2    Plapp, R.3
  • 15
    • 0015910297 scopus 로고
    • Purification and properties of an aryl acylamidase of Bacillus sphaericus, catalyzing the hydrolysis of various phenylamide herbicides and fungicides
    • Engelhardt G., Wallnöfer P.R., Plapp R. Purification and properties of an aryl acylamidase of Bacillus sphaericus, catalyzing the hydrolysis of various phenylamide herbicides and fungicides. Appl. Environ. Microbiol. 1973, 26:709-718.
    • (1973) Appl. Environ. Microbiol. , vol.26 , pp. 709-718
    • Engelhardt, G.1    Wallnöfer, P.R.2    Plapp, R.3
  • 16
    • 0031025515 scopus 로고    scopus 로고
    • Plasmid-encoded genes specifying aniline oxidation from Acinetobacter sp. YAA
    • Fujii T., Takeo M., Maeda Y. Plasmid-encoded genes specifying aniline oxidation from Acinetobacter sp. YAA. Microbiology 1997, 143:93-99.
    • (1997) Microbiology , vol.143 , pp. 93-99
    • Fujii, T.1    Takeo, M.2    Maeda, Y.3
  • 17
    • 0031036516 scopus 로고    scopus 로고
    • Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22(pTN1)
    • Fukumori F., Saint C.P. Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22(pTN1). J. Bacteriol. 1997, 179:399-408.
    • (1997) J. Bacteriol. , vol.179 , pp. 399-408
    • Fukumori, F.1    Saint, C.P.2
  • 18
    • 0030936847 scopus 로고    scopus 로고
    • Protein quality control: triage by chaperones and proteases
    • Gottesman S., Wickner S., Maurizi M.R. Protein quality control: triage by chaperones and proteases. Genes Dev. 1997, 11:815-823.
    • (1997) Genes Dev. , vol.11 , pp. 815-823
    • Gottesman, S.1    Wickner, S.2    Maurizi, M.R.3
  • 19
    • 0041976969 scopus 로고    scopus 로고
    • Combined toxicity effects of MTBE and pesticides measured with Vibrio fischeri and Daphnia magna bioassays
    • Hernando M.D., Ejerhoon M., Fernández-Alba A.R., Chisti Y. Combined toxicity effects of MTBE and pesticides measured with Vibrio fischeri and Daphnia magna bioassays. Water Res. 2003, 37:4091-4098.
    • (2003) Water Res. , vol.37 , pp. 4091-4098
    • Hernando, M.D.1    Ejerhoon, M.2    Fernández-Alba, A.R.3    Chisti, Y.4
  • 20
    • 0033453285 scopus 로고    scopus 로고
    • Observation of sodium gel-induced protein modifications in sodium dodecyl sulfate polyacrylamide gel electrophoresis and its implications for accurate molecular weight determination of gel-separated proteins by matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Jeannot M.A., Zheng J., Li L. Observation of sodium gel-induced protein modifications in sodium dodecyl sulfate polyacrylamide gel electrophoresis and its implications for accurate molecular weight determination of gel-separated proteins by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J. Am. Soc. Mass Spectr. 1999, 10:512-520.
    • (1999) J. Am. Soc. Mass Spectr. , vol.10 , pp. 512-520
    • Jeannot, M.A.1    Zheng, J.2    Li, L.3
  • 21
    • 40649113547 scopus 로고    scopus 로고
    • Pesticide Action Network North America, San Francisco, CA, URL:
    • Kegley S., Hill B., Orme S., Choi A.H. PAN Pesticide Database 2008, Pesticide Action Network North America, San Francisco, CA, URL:. http://www.pesticideinfo.org.
    • (2008) PAN Pesticide Database
    • Kegley, S.1    Hill, B.2    Orme, S.3    Choi, A.H.4
  • 23
    • 34250784440 scopus 로고    scopus 로고
    • Cloning and characterization of a catechol-degrading gene cluster from 3,4-dichloroaniline degrading bacterium Pseudomonas sp. KB35B
    • Kim Y.M., Park K., Kim W.C., Shin J.H., Kim J.E., Park H.D., Rhee I.K. Cloning and characterization of a catechol-degrading gene cluster from 3,4-dichloroaniline degrading bacterium Pseudomonas sp. KB35B. J. Agric. Food Chem. 2007, 55:4722-4727.
    • (2007) J. Agric. Food Chem. , vol.55 , pp. 4722-4727
    • Kim, Y.M.1    Park, K.2    Kim, W.C.3    Shin, J.H.4    Kim, J.E.5    Park, H.D.6    Rhee, I.K.7
  • 24
    • 3242810318 scopus 로고    scopus 로고
    • MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., Nei M. MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 2004, 5:150-163.
    • (2004) Brief Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 25
    • 27144478990 scopus 로고    scopus 로고
    • Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9
    • Liang Q., Takeo M., Chen M., Zhang W., Xu Y., Lin M. Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9. Microbiology 2005, 151:3435-3446.
    • (2005) Microbiology , vol.151 , pp. 3435-3446
    • Liang, Q.1    Takeo, M.2    Chen, M.3    Zhang, W.4    Xu, Y.5    Lin, M.6
  • 26
    • 0036147796 scopus 로고    scopus 로고
    • Male rats exposed to linuron in utero exhibit permanent changes in anogenital distance, nipple retention, and epididymal malformations that result in subsequent testicular atrophy
    • McIntyre B.S., Barlow N.J., Foster P.M. Male rats exposed to linuron in utero exhibit permanent changes in anogenital distance, nipple retention, and epididymal malformations that result in subsequent testicular atrophy. Toxicol. Sci. 2002, 65:62-70.
    • (2002) Toxicol. Sci. , vol.65 , pp. 62-70
    • McIntyre, B.S.1    Barlow, N.J.2    Foster, P.M.3
  • 27
    • 0842298605 scopus 로고    scopus 로고
    • Cloning and functional analysis of aniline dioxygenase gene cluster, from Frateuria sp. ANA-18, that metabolizes aniline via an ortho-cleavage pathway of catechol
    • Murakami S., Hayashi T., Maeda T., Takenaka S., Aoki K. Cloning and functional analysis of aniline dioxygenase gene cluster, from Frateuria sp. ANA-18, that metabolizes aniline via an ortho-cleavage pathway of catechol. Biosci. Biotechnol. Biochem. 2003, 67:2351-2358.
    • (2003) Biosci. Biotechnol. Biochem. , vol.67 , pp. 2351-2358
    • Murakami, S.1    Hayashi, T.2    Maeda, T.3    Takenaka, S.4    Aoki, K.5
  • 28
    • 0032944541 scopus 로고    scopus 로고
    • Negative regulation of bacterial heat shock genes
    • Narberhaus F. Negative regulation of bacterial heat shock genes. Mol. Microbiol. 1999, 31:1-8.
    • (1999) Mol. Microbiol. , vol.31 , pp. 1-8
    • Narberhaus, F.1
  • 29
    • 18844464043 scopus 로고    scopus 로고
    • Global analysis of the Ralstonia metallidurans proteome: prelude for the large-scale study of heavy metal response
    • Noël-Georis I., Vallaeys T., Chauvaux R., Monchy S., Falmagne P., Mergeay M., Wattiez R. Global analysis of the Ralstonia metallidurans proteome: prelude for the large-scale study of heavy metal response. Proteomics 2004, 4:151-179.
    • (2004) Proteomics , vol.4 , pp. 151-179
    • Noël-Georis, I.1    Vallaeys, T.2    Chauvaux, R.3    Monchy, S.4    Falmagne, P.5    Mergeay, M.6    Wattiez, R.7
  • 30
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins D.N., Pappin D.J.C., Creasy D.M., Cottrell J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 31
    • 24344489015 scopus 로고    scopus 로고
    • Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene
    • Segura A., Godoy P., van Dillewijn P., Hurtado A., Arroyo N., Santacruz S., Ramos J.-L. Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene. J. Bacteriol. 2005, 187:5937-5945.
    • (2005) J. Bacteriol. , vol.187 , pp. 5937-5945
    • Segura, A.1    Godoy, P.2    van Dillewijn, P.3    Hurtado, A.4    Arroyo, N.5    Santacruz, S.6    Ramos, J.-L.7
  • 32
    • 0035731116 scopus 로고    scopus 로고
    • Negative regulation of the heat shock response in Streptomyces
    • Servant P., Mazodier O. Negative regulation of the heat shock response in Streptomyces. Arch. Microbiol. 2001, 176:237-242.
    • (2001) Arch. Microbiol. , vol.176 , pp. 237-242
    • Servant, P.1    Mazodier, O.2
  • 33
    • 22144463550 scopus 로고    scopus 로고
    • Elucidating the key member of a linuron-mineralizing bacterial community by PCR and reverse transcription-PCR denaturing gradient gel electrophoresis 16S rRNA gene fingerprinting and cultivation
    • Sørensen S.R., Rasmussen J., Jacobsen C.S., Jacobsen O.S., Juhler R.K., Aamand J. Elucidating the key member of a linuron-mineralizing bacterial community by PCR and reverse transcription-PCR denaturing gradient gel electrophoresis 16S rRNA gene fingerprinting and cultivation. Appl. Environ. Microbiol. 2005, 71:4144-4148.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4144-4148
    • Sørensen, S.R.1    Rasmussen, J.2    Jacobsen, C.S.3    Jacobsen, O.S.4    Juhler, R.K.5    Aamand, J.6
  • 34
    • 0031930202 scopus 로고    scopus 로고
    • Sequence analysis of the genes encoding a multicomponent dioxygenase involved in oxidation of aniline and o-toluidine in Acinetobacter sp. YAA
    • Takeo M., Fujii T., Maeda Y. Sequence analysis of the genes encoding a multicomponent dioxygenase involved in oxidation of aniline and o-toluidine in Acinetobacter sp. YAA. J. Ferment. Bioeng. 1998, 85:17-24.
    • (1998) J. Ferment. Bioeng. , vol.85 , pp. 17-24
    • Takeo, M.1    Fujii, T.2    Maeda, Y.3
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 0036153421 scopus 로고    scopus 로고
    • Biotransformation of phenylurea herbicides by a soil bacterial strain, Arthrobacter sp. N2: structure, ecotoxicity and fate of diuron metabolite with soil fungi
    • Tixier C., Sancelme M., Aït-Aïssa S., Widehem P., Bonnemoy F., Cuer A., Truffaut N., Veschambre H. Biotransformation of phenylurea herbicides by a soil bacterial strain, Arthrobacter sp. N2: structure, ecotoxicity and fate of diuron metabolite with soil fungi. Chemosphere 2002, 46:519-526.
    • (2002) Chemosphere , vol.46 , pp. 519-526
    • Tixier, C.1    Sancelme, M.2    Aït-Aïssa, S.3    Widehem, P.4    Bonnemoy, F.5    Cuer, A.6    Truffaut, N.7    Veschambre, H.8
  • 38
    • 0035349911 scopus 로고    scopus 로고
    • Degradation of substituted phenylurea herbicides by Arthrobacter globiformis D47 and characterization of a plasmid-associated hydrolase gene, puhA
    • Turnbull G.A., Ousley M., Walker A., Shaw E., Morgan J.A.W. Degradation of substituted phenylurea herbicides by Arthrobacter globiformis D47 and characterization of a plasmid-associated hydrolase gene, puhA. Appl. Environ. Microbiol. 2001, 67:2270-2275.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2270-2275
    • Turnbull, G.A.1    Ousley, M.2    Walker, A.3    Shaw, E.4    Morgan, J.A.W.5
  • 39
    • 13544277014 scopus 로고    scopus 로고
    • Genes involved in aniline degradation by Delftia acidovorans strain 7N and its distribution in the natural environment
    • Urata M., Uchida E., Nojiri H., Omori T., Obo R., Miyaura N., Ouchiyama N. Genes involved in aniline degradation by Delftia acidovorans strain 7N and its distribution in the natural environment. Biosci. Biotechnol. Biochem. 2004, 68:2457-2465.
    • (2004) Biosci. Biotechnol. Biochem. , vol.68 , pp. 2457-2465
    • Urata, M.1    Uchida, E.2    Nojiri, H.3    Omori, T.4    Obo, R.5    Miyaura, N.6    Ouchiyama, N.7
  • 40
    • 33846951167 scopus 로고    scopus 로고
    • Biodegradation of 4-chloroaniline by bacteria enriched from soil
    • Vangnai A.S., Petchkroh W. Biodegradation of 4-chloroaniline by bacteria enriched from soil. FEMS Microbiol. Lett. 2007, 268:209-216.
    • (2007) FEMS Microbiol. Lett. , vol.268 , pp. 209-216
    • Vangnai, A.S.1    Petchkroh, W.2
  • 42
    • 84980162664 scopus 로고
    • The decomposition of urea herbicides by Bacillus sphaericus, isolated from soil
    • Wallnöfer P.R. The decomposition of urea herbicides by Bacillus sphaericus, isolated from soil. Weed Res. 1969, 9:333-339.
    • (1969) Weed Res. , vol.9 , pp. 333-339
    • Wallnöfer, P.R.1
  • 44
    • 0000369104 scopus 로고
    • Metabolism of 3,4-dichloroaniline by Pseudomonas putida
    • You I.S., Bartha R. Metabolism of 3,4-dichloroaniline by Pseudomonas putida. J. Agric. Food Chem. 1982, 30:274-277.
    • (1982) J. Agric. Food Chem. , vol.30 , pp. 274-277
    • You, I.S.1    Bartha, R.2


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