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Volumn 27, Issue 4, 2010, Pages 275-291

Spatial bacterial diversity in a recent freshwater tufa deposit

Author keywords

Biofilm; Community structure; Subsurface microbiology

Indexed keywords

BACTERIUM; BIOFILM; COMMUNITY STRUCTURE; DOMINANCE; GEOMICROBIOLOGY; METABOLISM; RNA; SPECIES DIVERSITY; SPECIES RICHNESS; STROMATOLITE; TUFA;

EID: 77952918930     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490450903410449     Document Type: Article
Times cited : (11)

References (59)
  • 1
    • 23144444270 scopus 로고    scopus 로고
    • Seasonal records of climatic change in annually laminated tufas: Short review and future prospects
    • Andrews JE, Brasier AT. 2005. Seasonal records of climatic change in annually laminated tufas: short review and future prospects. J Quaternary Sci 20:411421.
    • (2005) J Quaternary Sci , vol.20 , pp. 411-421
    • Andrews, J.E.1    Brasier, A.T.2
  • 2
    • 0035368824 scopus 로고    scopus 로고
    • Photosynthesis-induced biofilm calcification and calcium concentrations in Phanerozoic oceans
    • Arp G, Thiel V, Reimer A, Reitner J. 2001a. Photosynthesis-induced biofilm calcification and calcium concentrations in Phanerozoic oceans. Science 292:1701-1704.
    • (2001) Science , vol.292 , pp. 1701-1704
    • Arp, G.1    Thiel, V.2    Reimer, A.3    Reitner, J.4
  • 3
    • 0037281941 scopus 로고    scopus 로고
    • Microbialite formation in seawater of increased alkalinity, Satonda Crater lake, Indonesia
    • Arp G, Reimer A, Reitner J. 2003. Microbialite formation in seawater of increased alkalinity, Satonda Crater lake, Indonesia. J Sediment Res 73:105127.
    • (2003) J Sediment Res , vol.73 , pp. 105-127
    • Arp, G.1    Reimer, A.2    Reitner, J.3
  • 4
    • 0034932442 scopus 로고    scopus 로고
    • Fluvial tufa formation in a hard-water creek (Deinschwanger Bach, Franconian Alb, Germany)
    • Arp G, Wedemeyer N, Reitner J. 2001b. Fluvial tufa formation in a hard-water creek (Deinschwanger Bach, Franconian Alb, Germany). Facies 44:1-22.
    • (2001) Facies , vol.44 , pp. 1-22
    • Arp, G.1    Wedemeyer, N.2    Reitner, J.3
  • 5
    • 34248225741 scopus 로고    scopus 로고
    • Acidobacteria Phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the Phylum
    • Barns SM, Cain EC, Sommerville L, Kuske CR. 2007. Acidobacteria Phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the Phylum. Appl Environ Microbiol 73:3113-3116.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3113-3116
    • Barns, S.M.1    Cain, E.C.2    Sommerville, L.3    Kuske, C.R.4
  • 6
    • 54949092464 scopus 로고    scopus 로고
    • Metabolic microenvironmental control by photosynthetic biofilms under changing macroenvironmental temperature and pH conditions
    • Bissett A, Reimer A, De Beer D, Shiraishi F, Arp G. 2008. Metabolic microenvironmental control by photosynthetic biofilms under changing macroenvironmental temperature and pH conditions. Appl Environ Microbiol 74:63066312.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6306-6312
    • Bissett, A.1    Reimer, A.2    de Beer, D.3    Shiraishi, F.4    Arp, G.5
  • 7
    • 0000293726 scopus 로고
    • Mechanisms in algal calcification
    • Borowitzka MA. 1982. Mechanisms in algal calcification. Prog Phycol Res 1:137-177.
    • (1982) Prog Phycol Res , vol.1 , pp. 137-177
    • Borowitzka, M.A.1
  • 8
    • 0038369933 scopus 로고    scopus 로고
    • Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
    • Bowman JP, McCuaig RD. 2003. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl Environ Microbiol 69:2463-2483.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2463-2483
    • Bowman, J.P.1    McCuaig, R.D.2
  • 9
    • 0001091969 scopus 로고
    • Étude expérimentale de la formation de micrite et de sparite dans les stromalites d'eau douce à Rivularia
    • Caudwell C. 1987. Étude expérimentale de la formation de micrite et de sparite dans les stromalites d'eau douce à Rivularia. Bull Soc géol France 3:299-309.
    • (1987) Bull Soc Géol France , vol.3 , pp. 299-309
    • Caudwell, C.1
  • 12
    • 0028243558 scopus 로고
    • Alginate from Pseudomonas fluorescens and P. putida: Production and properties
    • Conti E, Flaibani A, O'Regan M, Sutherland IW. 1994. Alginate from Pseudomonas fluorescens and P. putida: production and properties. Microbiol 140:1125-1132.
    • (1994) Microbiol , vol.140 , pp. 1125-1132
    • Conti, E.1    Flaibani, A.2    O'Regan, M.3    Sutherland, I.W.4
  • 13
    • 64549157979 scopus 로고    scopus 로고
    • Flavobacterial community structure in a hardwater rivulet and adjacent forest soil, Harz Mountain, Germany
    • Cousin S. 2009. Flavobacterial community structure in a hardwater rivulet and adjacent forest soil, Harz Mountain, Germany. Curr Microbiol 58:409415.
    • (2009) Curr Microbiol , vol.58 , pp. 409-415
    • Cousin, S.1
  • 14
    • 51149115732 scopus 로고    scopus 로고
    • Culturable aerobic bacteria from the upstream region of a karst water rivulet
    • Cousin S, Brambilla E, Yang J, Stackebrandt E. 2008. Culturable aerobic bacteria from the upstream region of a karst water rivulet. Int Microbiol 11:91100.
    • (2008) Int Microbiol , vol.11 , pp. 91100
    • Cousin, S.1    Brambilla, E.2    Yang, J.3    Stackebrandt, E.4
  • 15
    • 0000850019 scopus 로고
    • The surficial sediments of the Big Bay Section of the Bay of Quinte, Lake Ontario
    • Damiani V, Thomas RL. 1974. The surficial sediments of the Big Bay Section of the Bay of Quinte, Lake Ontario. Can J Earth Sci 11:1562-1576.
    • (1974) Can J Earth Sci , vol.11 , pp. 1562-1576
    • Damiani, V.1    Thomas, R.L.2
  • 16
    • 34249902825 scopus 로고    scopus 로고
    • Epilithic cyanobacterial communities of a marine tropical beach rock (Heron Island, Great Barrier Reef): Diversity and diazotrophy
    • Díez B, Bauer K, Bergman B. 2007. Epilithic cyanobacterial communities of a marine tropical beach rock (Heron Island, Great Barrier Reef): diversity and diazotrophy. Appl Environ Microbiol 73:3656-3668.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3656-3668
    • Díez, B.1    Bauer, K.2    Bergman, B.3
  • 17
    • 0026451602 scopus 로고
    • 2 outgassing: Field measurements of precipitation rates in comparison to theoretical predictions
    • 2 outgassing: Field measurements of precipitation rates in comparison to theoretical predictions. Chem Geol 97:285-294.
    • (1992) Chem Geol , vol.97 , pp. 285-294
    • Dreyboldt, W.1    Buhmann, D.2    Michaelis, J.3    Usdowski, E.4
  • 18
    • 23944443706 scopus 로고    scopus 로고
    • Microbial lithification in marine stromatolites and hypersaline mats
    • Dupraz C, Visscher PT. 2005. Microbial lithification in marine stromatolites and hypersaline mats. Trends Microbiol 13:429-438.
    • (2005) Trends Microbiol , vol.13 , pp. 429-438
    • Dupraz, C.1    Visscher, P.T.2
  • 19
    • 0037161664 scopus 로고    scopus 로고
    • Recovery of 16S ribosomal RNA gene fragments from ancient halite
    • Fish SA, Shepherd TJ, McGenity TJ, Grant WD. 2002. Recovery of 16S ribosomal RNA gene fragments from ancient halite. Nature 417:432-436.
    • (2002) Nature , vol.417 , pp. 432-436
    • Fish, S.A.1    Shepherd, T.J.2    McGenity, T.J.3    Grant, W.D.4
  • 20
    • 0030425288 scopus 로고    scopus 로고
    • A review of tufa and travertine deposits of the world
    • Ford TD, Pedley HM. 1996. A review of tufa and travertine deposits of the world. Earth-Sci Rev 41:117-175.
    • (1996) Earth-Sci Rev , vol.41 , pp. 117-175
    • Ford, T.D.1    Pedley, H.M.2
  • 21
    • 0031754183 scopus 로고    scopus 로고
    • Freshwater organisms that build stromatolites: A synopsis of biocrystallisation by prokaryotic and eukaryotic algae
    • Freytet P, Verrecchia EP. 1998. Freshwater organisms that build stromatolites: a synopsis of biocrystallisation by prokaryotic and eukaryotic algae. Sediment 45:535-563.
    • (1998) Sediment , vol.45 , pp. 535-563
    • Freytet, P.1    Verrecchia, E.P.2
  • 22
    • 0017581329 scopus 로고
    • Occurrence of facultative anoxygenic photosynthesis among filamentous and unicellular Cyanobacteria
    • Garlick S, Oren A, Padan E. 1977. Occurrence of facultative anoxygenic photosynthesis among filamentous and unicellular Cyanobacteria. J Bacteriol 129:623-629.
    • (1977) J Bacteriol , vol.129 , pp. 623-629
    • Garlick, S.1    Oren, A.2    Padan, E.3
  • 23
    • 2342650168 scopus 로고    scopus 로고
    • Climatic change recorded by stable isotopes and trace elements in a British Holocene tufa
    • Garnett ER, Andrews JE, Preece RC, Dennis PF. 2004.Climatic change recorded by stable isotopes and trace elements in a British Holocene tufa. J Quaternary Sci 19:251-262.
    • (2004) J Quaternary Sci , vol.19 , pp. 251-262
    • Garnett, E.R.1    Andrews, J.E.2    Preece, R.C.3    Dennis, P.F.4
  • 24
    • 19544377552 scopus 로고    scopus 로고
    • Taxonomic outline of the procaryotes
    • In Garrity GM (ed.), 2nd edition release 5.0. Springer-Verlag, New-York
    • Garrity GM, Bell JA, Lilburn TG. 2004. Taxonomic outline of the procaryotes. In Garrity GM (ed.) Bergey's manual of systematic bacteriology, 2nd edition release 5.0. Springer-Verlag, New-York.
    • (2004) Bergey's Manual of Systematic Bacteriology
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.G.3
  • 25
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation to the population parameters
    • Good IJ. 1953. The population frequencies of species and the estimation to the population parameters. Biometrika 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 27
    • 0002325232 scopus 로고
    • Geochemicalcontrolsonacalciteprecipitation spring
    • JacobsonRL,UsdowskiE
    • JacobsonRL,UsdowskiE.1975.Geochemicalcontrolsonacalciteprecipitation spring. Contrib Mineral Petrol 51:65-74.
    • (1975) Contrib Mineral Petrol , vol.51 , pp. 65-74
  • 28
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen PH. 2006. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72:1719-1728.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 29
    • 67649939034 scopus 로고    scopus 로고
    • Bacteria rather then Archaea dominate microbial ammonia oxidation in an agricultural soil
    • Jia Z, Conrad R. 2009. Bacteria rather then Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11:1658-1671.
    • (2009) Environ Microbiol , vol.11 , pp. 1658-1671
    • Jia, Z.1    Conrad, R.2
  • 30
    • 0020873712 scopus 로고
    • Photosynthesis and structure of benthic microbial mats: Microelectrode and SEM studies of four cyanobacterial communities
    • Jørgensen BB, Revsbech NP. 1983. Photosynthesis and structure of benthic microbial mats: Microelectrode and SEM studies of four cyanobacterial communities. Limnol Oceanogr 28:1075-1093.
    • (1983) Limnol Oceanogr , vol.28 , pp. 1075-1093
    • Jørgensen, B.B.1    Revsbech, N.P.2
  • 34
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R. 2006. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7:371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 35
    • 0033165848 scopus 로고    scopus 로고
    • Cyanobacterial tufa calcification in two freshwater streams: Ambient environment, chemical thresholds and biological processes
    • Merz-Preiß M, Riding R. 1999. Cyanobacterial tufa calcification in two freshwater streams: ambient environment, chemical thresholds and biological processes. Sediment Geol 126:103-124.
    • (1999) Sediment Geol , vol.126 , pp. 103-124
    • Merz-Preiß, M.1    Riding, R.2
  • 37
    • 0037669306 scopus 로고    scopus 로고
    • Molecular identification of Cyanobacteria associated with stromatolites from distinct geographical locations
    • Neilan BA, Burns BP, Relman DA, Lowe DR. 2002. Molecular identification of Cyanobacteria associated with stromatolites from distinct geographical locations. Astrobiol 2:271-280.
    • (2002) Astrobiol , vol.2 , pp. 271-280
    • Neilan, B.A.1    Burns, B.P.2    Relman, D.A.3    Lowe, D.R.4
  • 39
    • 23744506517 scopus 로고    scopus 로고
    • Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia
    • Papineau D, Walker JJ, Mojzsis SJ, Pace NR. 2005. Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia. Appl Environ Microbiol 71:4822-4832.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4822-4832
    • Papineau, D.1    Walker, J.J.2    Mojzsis, S.J.3    Pace, N.R.4
  • 40
    • 0000110114 scopus 로고
    • Association of Cyanobacteria with tufa deposits: Identity, enumeration, and nature of the sheath material revealed by histochemistry
    • Pentecost A. 1985. Association of Cyanobacteria with tufa deposits: identity, enumeration, and nature of the sheath material revealed by histochemistry. Geomicrobiol J 4:285-298.
    • (1985) Geomicrobiol J , vol.4 , pp. 285-298
    • Pentecost, A.1
  • 41
    • 84891446421 scopus 로고    scopus 로고
    • Springer, Nederlands
    • Pentecost A. 2005. Travertine. Springer, Nederlands. 445 p.
    • (2005) Travertine , pp. 445
    • Pentecost, A.1
  • 42
    • 0024257816 scopus 로고
    • Inability to demonstrate calcite precipitation by bacterial isolates from travertine
    • Pentecost A, Terry C. 1988. Inability to demonstrate calcite precipitation by bacterial isolates from travertine. Geomicrobiol J 6:185-194.
    • (1988) Geomicrobiol J , vol.6 , pp. 185-194
    • Pentecost, A.1    Terry, C.2
  • 43
    • 0037672146 scopus 로고    scopus 로고
    • Nuclear gene sequences from a late Pleistocene Sloth Coprolite
    • Poinar H, Kuch M, McDonald G, Martin P, Pääbo S. 2003. Nuclear gene sequences from a late Pleistocene Sloth Coprolite. Curr Biol 13:1150-1152.
    • (2003) Curr Biol , vol.13 , pp. 1150-1152
    • Poinar, H.1    Kuch, M.2    McDonald, G.3    Martin, P.4    Pääbo, S.5
  • 44
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, Peplies J, Glöckner FO. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nuc Acids Res 35:7188-7196.
    • (2007) Nuc Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 45
    • 0029739071 scopus 로고    scopus 로고
    • Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil
    • Rabus R, Fukui M, Wilkes H, Widdle F. 1996. Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Appl Environ Microbiol 62:3605-3613.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3605-3613
    • Rabus, R.1    Fukui, M.2    Wilkes, H.3    Widdle, F.4
  • 46
    • 0000626343 scopus 로고
    • Classification of microbial carbonates
    • In Riding, R. (ed), Springer, Berlin
    • Riding, R. 1991. Classification of microbial carbonates. In Riding, R. (ed) Calcareous algae and 1403 stromatolites. Springer, Berlin.
    • (1991) Calcareous Algae and 1403 Stromatolites
    • Riding, R.1
  • 47
    • 0034067473 scopus 로고    scopus 로고
    • Microbial carbonates: The geological record of calcified bacterial-algal mats and biofilms
    • Riding R. 2000. Microbial carbonates: the geological record of calcified bacterial-algal mats and biofilms. Sedimentology 47:179-214.
    • (2000) Sedimentology , vol.47 , pp. 179-214
    • Riding, R.1
  • 48
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 49
    • 41549091408 scopus 로고    scopus 로고
    • Photosynthesis,respiration and exopolymer calcium-binding in biofilm calcification (Westerhöfer and Deinschanger creek, Germany)
    • Shiraishi F, Bissett A, de Beer D, Reimer A, Arp G.2008a.Photosynthesis,respiration and exopolymer calcium-binding in biofilm calcification (Westerhöfer and Deinschanger creek, Germany). Geomicrobiol J 25:83-94.
    • (2008) Geomicrobiol J , vol.25 , pp. 83-94
    • Shiraishi, F.1    Bissett, A.2    de Beer, D.3    Reimer, A.4    Arp, G.5
  • 50
    • 43749108371 scopus 로고    scopus 로고
    • Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany)
    • Shiraishi F, Reimer A, Bissett A, de Beer D, Arp G. 2008b. Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany). Paleogeograph Paleoclim Paleoecol 262:91-106.
    • (2008) Paleogeograph Paleoclim Paleoecol , vol.262 , pp. 91-106
    • Shiraishi, F.1    Reimer, A.2    Bissett, A.3    de Beer, D.4    Arp, G.5
  • 51
    • 48749091280 scopus 로고    scopus 로고
    • In situ detection of bacteria in calcified biofilms using FISH and CARD-FISH
    • Shiraishi F, Zippel B, Neu TR, Arp G. 2008c. In situ detection of bacteria in calcified biofilms using FISH and CARD-FISH. J Microbiol Meth 75:103-108.
    • (2008) J Microbiol Meth , vol.75 , pp. 103-108
    • Shiraishi, F.1    Zippel, B.2    Neu, T.R.3    Arp, G.4
  • 52
    • 0026284423 scopus 로고
    • One day in the life of a stream-a diurnal inorganic carbon mass balance for a travertine-depositing stream (Waterfall Beck, Yorkshire)
    • Spiro B, Pentecost A. 1991. One day in the life of a stream-a diurnal inorganic carbon mass balance for a travertine-depositing stream (Waterfall Beck, Yorkshire). Geomicrobiol J 9:1-11.
    • (1991) Geomicrobiol J , vol.9 , pp. 1-11
    • Spiro, B.1    Pentecost, A.2
  • 53
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt E, Ebers J. 2006. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today Nov:152-155.
    • (2006) Microbiol Today Nov , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 55
    • 0002314081 scopus 로고
    • Bacterially controlled calcification of freshwater Schizothrix-stromatolites: An example from the Pieniny Mts, Southern Poland
    • In Bertrand-Sarfati J. Monty C (ed), Kluwer, Dordrecht
    • Szulc J, Smyk B. 1994. Bacterially controlled calcification of freshwater Schizothrix-stromatolites: an example from the Pieniny Mts, Southern Poland. In Bertrand-Sarfati J. Monty C (ed) Phanerozoic Stromatolites II. Kluwer, Dordrecht. P 31-51.
    • (1994) Phanerozoic Stromatolites II , pp. 31-51
    • Szulc, J.1    Smyk, B.2
  • 58
    • 34249885115 scopus 로고    scopus 로고
    • Phylogenetic composition of rocky mountain endolithic microbial ecosystems
    • Walker JJ, Pace NR. 2007. Phylogenetic composition of rocky mountain endolithic microbial ecosystems. Appl Environ Microbiol 73:3497-3504.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3497-3504
    • Walker, J.J.1    Pace, N.R.2
  • 59
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4


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