Rapid identification of fungal pathogens in positive blood cultures using oligonucleotide array hybridization

Clinical Microbiology and Infection

Volumn 16, Issue 5, 2010, Pages 493-500

  Hsiue, H C ^a   Huang, Y T ^b   Kuo, Y L ^b   Liao, C H ^c   Chang, T C ^d   Hsueh, P R ^b  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^c FAR EASTERN MEMORIAL HOSPITAL   (Taiwan)

^d NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

Array; Fungaemia; Fungus; Hybridization; Identification; ITS

Indexed keywords

AMPHOTERICIN B; FLUCONAZOLE; FLUCYTOSINE; INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; ITRACONAZOLE; RIBOSOME RNA; VORICONAZOLE;

ADULT; AGED; ANTIFUNGAL SUSCEPTIBILITY; ARTICLE; BLOOD CULTURE; BLOOD SAMPLING; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS; CONTROLLED STUDY; CRYPTOCOCCUS NEOFORMANS; DNA HYBRIDIZATION; DNA MICROARRAY; FEASIBILITY STUDY; FEMALE; FUNGAL DETECTION; FUNGUS IDENTIFICATION; HUMAN; IN VITRO STUDY; INTERMETHOD COMPARISON; MALE; MINIMUM INHIBITORY CONCENTRATION; MYCOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PENICILLIUM MARNEFFEI; PRIORITY JOURNAL; RHODOTORULA GLUTINIS; RHODOTORULA MUCILAGINOSA; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; TREATMENT OUTCOME; TRICHOSPORON ASAHII;

BACTERIA (MICROORGANISMS); CANDIDA; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS; FILOBASIDIELLA NEOFORMANS; FUNGI; PENICILLIUM MARNEFFEI; RHODOTORULA GLUTINIS; RHODOTORULA MUCILAGINOSA; TRICHOSPORON ASAHII;

EID: 77952910641     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2009.02828.x     Document Type: Article

References (30)

1. Pfaller MA, Diekema DJ. Rare and emerging opportunistic fungal pathogens: concern for resistance beyond Candida albicans and Aspergillus fumigatus. J Clin Microbiol 2004, 42:4419-4431.
2. Pfaller MA, Diekema DJ. Role of sentinel surveillance of candidemia: trends in species distribution and antifungal susceptibility. J Clin Microbiol 2002, 40:3551-3557.
3. Patterson TF. Advances and challenges in management of invasive mycoses. Lancet 2005, 366:1013-1025.
4. Barnes RA. Early diagnosis of fungal infection in immunocompromised patients. J Antimicrob Chemother 2008, 61(suppl 1):i3-i6.
5. Gherna M, Merz WG. Identification of Candida albicans and Candida glabrata within 1.5 hours directly from positive blood culture bottles with a shortened peptide nucleic acid fluorescence in situ hybridization protocol. J Clin Microbiol 2009, 47:247-248.
6. Li YL, Leaw SN, Chen JH, Chang HC, Chang TC. Rapid identification of yeasts commonly found in positive blood cultures by amplification of the internal transcribed spacer regions 1 and 2. Eur J Clin Microbiol Infect Dis 2003, 22:693-696.
7. Leaw SN, Chang HC, Sun HF, Barton R, Bouchara J-P, Chang TC. Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions. J Clin Microbiol 2006, 44:693-699.
8. Henry T, Iwen PC, Hinrichs SH. Identification of Aspergillus species using internal transcribed spacer regions 1 and 2. J Clin Microbiol 2000, 38:1510-1515.
9. Louie RF, Tang Z, Albertson TE, Cohen S, Tran NK, Kost GJ. Multiplex polymerase chain reaction detection enhancement of bacteremia and fungemia. Crit Care Med 2008, 36:1487-1492.
10. Chang HC, Leaw SN, Huang AH, Wu TL, Chang TC. Rapid identification of yeasts in positive blood cultures by a multiplex PCR method. J Clin Microbiol 2001, 39:3466-3471.
11. Coignard C, Hurst SF, Benjamin LE, Brandt ME, Warnock DW, Morrison CJ. Resolution of discrepant results for Candida species identification by using DNA probes. J Clin Microbiol 2004, 42:858-861.
12. Diaz MR, Fell JW. High-throughput detection of pathogenic yeasts of the genus Trichosporon. J Clin Microbiol 2004, 42:3696-3706.
13. Huang A, Li J-W, Shen Z-Q, Wang X-W, Jin M. High-throughput identification of clinical pathogenic fungi by hybridization to an oligonucleotide microarray. J Clin Microbiol 2006, 44:3299-3305.
14. Leinberger DM, Schumacher U, Autenrieth IB, Bachmann TT. Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses. J Clin Microbiol 2005, 43:4943-4953.
15. Spiess B, Seifarth W, Hummel M. DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients. J Clin Microbiol 2007, 45:3743-3753.
16. Campa D, Tavanti A, Gemignani F. DNA microarray based on arrayed-primer extension technique for identification of pathogenic fungi responsible for invasive and superficial mycoses. J Clin Microbiol 2008, 46:909-915.
17. Leaw SN, Chang HC, Barton R, Bouchara J-P, Chang TC. Identification of medically important Candida and non-Candida yeast species by an oligonucleotide array. J Clin Microbiol 2007, 45:2220-2229.
18. Hsiao CR, Huang L, Bouchara J-P, Barton R, Li HC, Chang TC. Identification of medically important moulds by an oligonucleotide array. J Clin Microbiol 2005, 43:3760-3768.
19. Li HC, Bouchara JP, Hsu MM. Identification of dermatophytes by an oligonucleotide array. J Clin Microbiol 2007, 45:3160-3166.
20. Isenberg HD. Clinical microbiology procedures handbook 2004, 2nd edn, New York, ASM Press
21. Hazen KC, Howell SA. Manual of clinical microbiology 2003, 8th edn, Washington, DC, ASM Press
22. Lai C-C, Tan C-K, Huang Y-T, Shao P-L, Hsueh P-R. Current challenges in the management of invasive fungal infections. J Infect Chemother 2008, 14:77-85.
23. Garnacho-Montero J, Garcia-Garmendia JL, Barrero-Almodovar A, Jimenez-Jimenez FJ, Perez-Paredes C, Ortiz-Leyba C. Impact of adequate empirical antibiotic therapy on the outcome of patients admitted to the intensive care unit with sepsis. Crit Care Med 2003, 31:2742-2751.
24. Pulimood S, Ganesan L, Alangaden G, Chandrasekar P. Polymicrobial candidemia. Diagn Microbiol Infect Dis 2002, 44:353-357.
25. Klotz SA, Chasin BS, Powell B, Gaur NK, Lipke PN. Polymicrobial bloodstream infections involving Candida species: analysis of patients and review of the literature. Diagn Microbiol Infect Dis 2007, 59:401-406.
26. Duong TA. Infection due to Penicillium marneffei, an emerging pathogen: review of 155 reported cases. Clin Infect Dis 1996, 23:125-130.
27. Hsueh PR, Teng LJ, Hung CC. Molecular evidence for strain dissemination of Penicillium marneffei: an emerging pathogen in Taiwan. J Infect Dis 2000, 181:1706-1712.
28. Reference method for broth dilution antifungal susceptibility testing of yeasts 2002, 2nd edn, Approved standard M27-A2, Wayne, PA, NCCLS
29. Pfaller MA, Diekema DJ, Rex JH. Correlation of mic with outcome for Candida species tested against voriconazole: analysis and proposal for interpretive breakpoints. J Clin Microbiol 2006, 44:819-826.
30. Nguyen MH, Clancy CJ, Yu VL. Do in vitro susceptibility data predict the microbiologic response to amphotericin B? Results of a prospective study of patients with Candida fungemia. J Infect Dis 1998, 177:425-430.