-
1
-
-
0032987196
-
Closing in on bacteriorhodopsin: Progress in understanding the molecule
-
Haupts, U., Tittor, J., and Oesterhelt, D. (1999) Closing in on bacteriorhodopsin: Progress in understanding the molecule Annu. Rev. Biophys. Biomol. Struct. 28, 367-399
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 367-399
-
-
Haupts, U.1
Tittor, J.2
Oesterhelt, D.3
-
2
-
-
1942436349
-
The archaeal sensory rhodopsin II/transducer complex: A model for transmembrane signal transfer
-
Klare, J. P., Gordeliy, V. I., Labahn, J., Buldt, G., Steinhoff, H. J., and Engelhard, M. (2004) The archaeal sensory rhodopsin II/transducer complex: A model for transmembrane signal transfer FEBS Lett. 564, 219-224
-
(2004)
FEBS Lett.
, vol.564
, pp. 219-224
-
-
Klare, J.P.1
Gordeliy, V.I.2
Labahn, J.3
Buldt, G.4
Steinhoff, H.J.5
Engelhard, M.6
-
3
-
-
0034499002
-
Molecular mechanism of ion transport in bacteriorhodopsin: Insights from crystallographic, spectroscopic, kinetic, and mutational studies
-
Lanyi, J. K. (2000) Molecular mechanism of ion transport in bacteriorhodopsin: Insights from crystallographic, spectroscopic, kinetic, and mutational studies J. Phys. Chem. B 104, 11441-11448
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 11441-11448
-
-
Lanyi, J.K.1
-
4
-
-
0034734230
-
Proton transport by sensory rhodopsins and its modulation by transducer-binding
-
Sasaki, J. and Spudich, J. L. (2000) Proton transport by sensory rhodopsins and its modulation by transducer-binding Biochim. Biophys. Acta 1460, 230-239
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 230-239
-
-
Sasaki, J.1
Spudich, J.L.2
-
5
-
-
0034519206
-
Retinylidene proteins: Structures and functions from archaea to humans
-
Spudich, J. L., Yang, C. S., Jung, K. H., and Spudich, E. N. (2000) Retinylidene proteins: Structures and functions from archaea to humans Annu. Rev. Cell Dev. Biol. 16, 365-392
-
(2000)
Annu. Rev. Cell Dev. Biol.
, vol.16
, pp. 365-392
-
-
Spudich, J.L.1
Yang, C.S.2
Jung, K.H.3
Spudich, E.N.4
-
6
-
-
33847086787
-
An external point-charge model for bacteriorhodopsin to account for its purple color
-
Nakanishi, K., Baloghnair, V., Arnaboldi, M., Tsujimoto, K., and Honig, B. (1980) An External Point-Charge Model for Bacteriorhodopsin To Account for Its Purple Color J. Am. Chem. Soc. 102, 7945-7947
-
(1980)
J. Am. Chem. Soc.
, vol.102
, pp. 7945-7947
-
-
Nakanishi, K.1
Baloghnair, V.2
Arnaboldi, M.3
Tsujimoto, K.4
Honig, B.5
-
7
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Beja, O., Spudich, E. N., Spudich, J. L., Leclerc, M., and DeLong, E. F. (2001) Proteorhodopsin phototrophy in the ocean Nature 411, 786-789
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Beja, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
Delong, E.F.5
-
8
-
-
33749557420
-
Microbial rhodopsins: Functional versatility and genetic mobility
-
Sharma, A. K., Spudich, J. L., and Doolittle, W. F. (2006) Microbial rhodopsins: Functional versatility and genetic mobility Trends Microbiol. 14, 463-469
-
(2006)
Trends Microbiol.
, vol.14
, pp. 463-469
-
-
Sharma, A.K.1
Spudich, J.L.2
Doolittle, W.F.3
-
9
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Beja, O., Aravind, L., Koonin, E. V., Suzuki, M. T., Hadd, A., Nguyen, L. P., Jovanovich, S., Gates, C. M., Feldman, R. A., Spudich, J. L., Spudich, E. N., and DeLong, E. F. (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea Science 289, 1902-1906
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Beja, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
Spudich, E.N.11
Delong, E.F.12
-
10
-
-
0141817991
-
Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin
-
Wang, W. W., Sineshchekov, O. A., Spudich, E. N., and Spudich, J. L. (2003) Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin J. Biol. Chem. 278, 33985-33991
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 33985-33991
-
-
Wang, W.W.1
Sineshchekov, O.A.2
Spudich, E.N.3
Spudich, J.L.4
-
11
-
-
0038391981
-
Diversification and spectral tuning in marine proteorhodopsins
-
Man, D. L., Wang, W. W., Sabehi, G., Aravind, L., Post, A. F., Massana, R., Spudich, E. N., Spudich, J. L., and Beja, O. (2003) Diversification and spectral tuning in marine proteorhodopsins EMBO J. 22, 1725-1731
-
(2003)
EMBO J.
, vol.22
, pp. 1725-1731
-
-
Man, D.L.1
Wang, W.W.2
Sabehi, G.3
Aravind, L.4
Post, A.F.5
Massana, R.6
Spudich, E.N.7
Spudich, J.L.8
Beja, O.9
-
12
-
-
0036382848
-
Proteorhodopsin is a light-driven proton pump with variable vectoriality
-
Friedrich, T., Geibel, S., Kalmbach, R., Chizhov, I., Ataka, K., Heberle, J., Engelhard, M., and Bamberg, E. (2002) Proteorhodopsin is a light-driven proton pump with variable vectoriality J. Mol. Biol. 321, 821-838
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 821-838
-
-
Friedrich, T.1
Geibel, S.2
Kalmbach, R.3
Chizhov, I.4
Ataka, K.5
Heberle, J.6
Engelhard, M.7
Bamberg, E.8
-
13
-
-
33846238031
-
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
-
Gomez-Consarnau, L., Gonzalez, J. M., Coll-Llado, M., Gourdon, P., Pascher, T., Neutze, R., Pedros-Alio, C., and Pinhassi, J. (2007) Light stimulates growth of proteorhodopsin-containing marine Flavobacteria Nature 445, 210-213
-
(2007)
Nature
, vol.445
, pp. 210-213
-
-
Gomez-Consarnau, L.1
Gonzalez, J.M.2
Coll-Llado, M.3
Gourdon, P.4
Pascher, T.5
Neutze, R.6
Pedros-Alio, C.7
Pinhassi, J.8
-
14
-
-
3142779894
-
Structural changes in the photoactive site of proteorhodopsin during the primary photoreaction
-
Bergo, V., Amsden, J. J., Spudich, E. N., Spudich, J. L., and Rothschild, K. J. (2004) Structural changes in the photoactive site of proteorhodopsin during the primary photoreaction Biochemistry 43, 9075-9083
-
(2004)
Biochemistry
, vol.43
, pp. 9075-9083
-
-
Bergo, V.1
Amsden, J.J.2
Spudich, E.N.3
Spudich, J.L.4
Rothschild, K.J.5
-
15
-
-
77952870175
-
Structural changes in the photoactive site of blue-absorbing proteorhodopsin in the primary photoreaction
-
Amsden, J. J., Kralj, J. M., Bergo, V., Spudich, E. N., Spudich, J. L., and Rothschild, K. J. (2007) Structural changes in the photoactive site of blue-absorbing proteorhodopsin in the primary photoreaction Biophys. J. 148A
-
(2007)
Biophys. J.
-
-
Amsden, J.J.1
Kralj, J.M.2
Bergo, V.3
Spudich, E.N.4
Spudich, J.L.5
Rothschild, K.J.6
-
16
-
-
13544249423
-
Purification and spectroscopic studies of proteorhodopsin
-
Krebs, R. A., Devita, A. M., Partha, R., Alexiev, U., Dunmire, D., and Braiman, M. S. (2002) Purification and spectroscopic studies of proteorhodopsin Biophys. J. 82, 224A
-
(2002)
Biophys. J.
, vol.82
-
-
Krebs, R.A.1
Devita, A.M.2
Partha, R.3
Alexiev, U.4
Dunmire, D.5
Braiman, M.S.6
-
17
-
-
0037197668
-
Proton transfers in the photochemical reaction cycle of proteorhodopsin
-
Dioumaev, A. K., Brown, L. S., Shih, J., Spudich, E. N., Spudich, J. L., and Lanyi, J. K. (2002) Proton transfers in the photochemical reaction cycle of proteorhodopsin Biochemistry 41, 5348-5358
-
(2002)
Biochemistry
, vol.41
, pp. 5348-5358
-
-
Dioumaev, A.K.1
Brown, L.S.2
Shih, J.3
Spudich, E.N.4
Spudich, J.L.5
Lanyi, J.K.6
-
18
-
-
0037197668
-
Proton transfers in the photochemical reaction cycle of proteorhodopsin
-
Varo, G., Brown, L. S., Lakatos, M., and Lanyi, J. K. (2002) Proton transfers in the photochemical reaction cycle of proteorhodopsin Biochemistry 41, 5348-5358
-
(2002)
Biochemistry
, vol.41
, pp. 5348-5358
-
-
Varo, G.1
Brown, L.S.2
Lakatos, M.3
Lanyi, J.K.4
-
19
-
-
0038636606
-
The photochemical reaction cycle of proteorhodopsin at low pH
-
Lakatos, M., Lanyi, J. K., Szakacs, J., and Varo, G. (2003) The photochemical reaction cycle of proteorhodopsin at low pH Biophys. J. 84, 3252-3256 (Pubitemid 36531772)
-
(2003)
Biophysical Journal
, vol.84
, Issue.5
, pp. 3252-3256
-
-
Lakatos, M.1
Lanyi, J.K.2
Szakacs, J.3
Varo, G.4
-
20
-
-
0035970038
-
Primary reactions of sensory rhodopsins
-
Lutz, I., Sieg, A., Wegener, A. A., Engelhard, M., Boche, I., Otsuka, M., Oesterhelt, D., Wachtveit, J., and Zinth, W. (2001) Primary reactions of sensory rhodopsins Proc. Natl. Acad. Sci. U.S.A. 98, 962-967
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 962-967
-
-
Lutz, I.1
Sieg, A.2
Wegener, A.A.3
Engelhard, M.4
Boche, I.5
Otsuka, M.6
Oesterhelt, D.7
Wachtveit, J.8
Zinth, W.9
-
21
-
-
1042288283
-
Selectivity of retinal photoisomerization in proteorhodopsin is controlled by aspartic acid 227
-
Imasheva, E. S., Balashov, S. P., Wang, J. M., Dioumaev, A. K., and Lanyi, J. K. (2004) Selectivity of retinal photoisomerization in proteorhodopsin is controlled by aspartic acid 227 Biochemistry 43, 1648-1655
-
(2004)
Biochemistry
, vol.43
, pp. 1648-1655
-
-
Imasheva, E.S.1
Balashov, S.P.2
Wang, J.M.3
Dioumaev, A.K.4
Lanyi, J.K.5
-
22
-
-
27444441822
-
Effect of anions on the photocycle of halorhodopsin. Substitution of chloride with formate anion
-
Mevorat-Kaplan, K., Brumfeld, V., Engelhard, M., and Sheves, M. (2005) Effect of anions on the photocycle of halorhodopsin. Substitution of chloride with formate anion Biochemistry 44, 14231-14237
-
(2005)
Biochemistry
, vol.44
, pp. 14231-14237
-
-
Mevorat-Kaplan, K.1
Brumfeld, V.2
Engelhard, M.3
Sheves, M.4
-
23
-
-
0033066074
-
Chloride ion binding to bacteriorhodopsin at low pH: An infrared spectroscopic study
-
Kelemen, L., Galajda, P., Szaraz, S., and Ormos, P. (1999) Chloride ion binding to bacteriorhodopsin at low pH: An infrared spectroscopic study Biophys. J. 76, 1951-1958
-
(1999)
Biophys. J.
, vol.76
, pp. 1951-1958
-
-
Kelemen, L.1
Galajda, P.2
Szaraz, S.3
Ormos, P.4
-
24
-
-
0010172563
-
Effect of lipid surface charges on the purple-to-blue transition of bacteriorhodopsin
-
Szundi, I. and Stoeckenius, W. (1987) Effect of lipid surface charges on the purple-to-blue transition of bacteriorhodopsin Proc. Natl. Acad. Sci. U.S.A. 84, 3681-3684
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 3681-3684
-
-
Szundi, I.1
Stoeckenius, W.2
-
25
-
-
0024065110
-
Purple-to-blue transition of bacteriorhodopsin in a neutral lipid environment
-
Szundi, I. and Stoeckenius, W. (1988) Purple-to-blue transition of bacteriorhodopsin in a neutral lipid environment Biophys. J. 54, 227-232
-
(1988)
Biophys. J.
, vol.54
, pp. 227-232
-
-
Szundi, I.1
Stoeckenius, W.2
-
26
-
-
0024709605
-
Surface pH controls purple-to-blue transition of bacteriorhodopsin
-
Szundi, I. and Stoeckenius, W. (1989) Surface pH controls purple-to-blue transition of bacteriorhodopsin Biophys. J. 56, 369-383
-
(1989)
Biophys. J.
, vol.56
, pp. 369-383
-
-
Szundi, I.1
Stoeckenius, W.2
-
27
-
-
0022970570
-
Characterization of metal ion-binding sites in bacteriorhodopsin
-
Ariki, M. and Lanyi, J. K. (1986) Characterization of metal ion-binding sites in bacteriorhodopsin J. Biol. Chem. 261, 8167-8174
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 8167-8174
-
-
Ariki, M.1
Lanyi, J.K.2
-
30
-
-
0030781314
-
Titration kinetics of Asp-85 in bacteriorhodopsin: Exclusion of the retinal pocket as the color-controlling cation binding site
-
Fu, X., Bressler, S., Ottolenghi, M., Eliash, T., Friedman, N., and Sheves, M. (1997) Titration kinetics of Asp-85 in bacteriorhodopsin: Exclusion of the retinal pocket as the color-controlling cation binding site FEBS Lett. 416, 167-170
-
(1997)
FEBS Lett.
, vol.416
, pp. 167-170
-
-
Fu, X.1
Bressler, S.2
Ottolenghi, M.3
Eliash, T.4
Friedman, N.5
Sheves, M.6
-
31
-
-
0034901420
-
Specific binding sites for cations in bacteriorhodopsin
-
Eliash, T., Weiner, L., Ottolenghi, M., and Sheves, M. (2001) Specific binding sites for cations in bacteriorhodopsin Biophys. J. 81, 1155-1162
-
(2001)
Biophys. J.
, vol.81
, pp. 1155-1162
-
-
Eliash, T.1
Weiner, L.2
Ottolenghi, M.3
Sheves, M.4
-
32
-
-
20444417109
-
Titration of the bacteriorhodopsin Schiff base involves titration of an additional protein residue
-
Zadok, U., Asato, A. E., and Sheves, M. (2005) Titration of the bacteriorhodopsin Schiff base involves titration of an additional protein residue Biochemistry 44, 8479-8485
-
(2005)
Biochemistry
, vol.44
, pp. 8479-8485
-
-
Zadok, U.1
Asato, A.E.2
Sheves, M.3
-
33
-
-
0025016817
-
Substitution of amino acids Asp-85, Asp-212, and Arg-82 in bacteriorhodopsin affects the proton release phase of the pump and the pK of the Schiff base
-
Otto, H., Marti, T., Holz, M., Mogi, T., Stern, L. J., Engel, F., Khorana, H. G., and Heyn, M. P. (1990) Substitution of amino acids Asp-85, Asp-212, and Arg-82 in bacteriorhodopsin affects the proton release phase of the pump and the pK of the Schiff base Proc. Natl. Acad. Sci. U. S. A. 87, 1018-1022
-
(1990)
Proc. Natl. Acad. Sci. U. S. A.
, vol.87
, pp. 1018-1022
-
-
Otto, H.1
Marti, T.2
Holz, M.3
Mogi, T.4
Stern, L.J.5
Engel, F.6
Khorana, H.G.7
Heyn, M.P.8
-
34
-
-
0028982486
-
PKa of the protonated Schiff base and aspartic-85 in the bacteriorhodopsin binding-site is controlled by a specific geometry between the two residues
-
Rousso, I., Friedman, N., Sheves, M., and Ottolenghi, M. (1995) pKa of the protonated Schiff base and aspartic-85 in the bacteriorhodopsin binding-site is controlled by a specific geometry between the two residues Biochemistry 34, 12059-12065
-
(1995)
Biochemistry
, vol.34
, pp. 12059-12065
-
-
Rousso, I.1
Friedman, N.2
Sheves, M.3
Ottolenghi, M.4
-
35
-
-
0000559536
-
A mechanism for controlling the pKa of the retinal protonated Schiff base in retinal proteins: A study with model compounds
-
Gat, Y. and Sheves, M. (1993) A mechanism for controlling the pKa of the retinal protonated Schiff base in retinal proteins: A study with model compounds J. Am. Chem. Soc. 115, 3772-3773
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 3772-3773
-
-
Gat, Y.1
Sheves, M.2
-
36
-
-
0027453982
-
Effect of the arginine 82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release and photochemical cycle
-
Balashov, S., Govindjee, R., Kono, M., Imasheva, E., Lukashev, E., Ebrey, T., Crouch, R., and Menick, D. (1993) Effect of the arginine 82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release and photochemical cycle Biochemistry 32, 10331-10343
-
(1993)
Biochemistry
, vol.32
, pp. 10331-10343
-
-
Balashov, S.1
Govindjee, R.2
Kono, M.3
Imasheva, E.4
Lukashev, E.5
Ebrey, T.6
Crouch, R.7
Menick, D.8
-
37
-
-
47049083307
-
Color change of proteorhodopsin by a single amino acid replacement at a distant cytoplasmic loop
-
Yoshitsugu, M., Shibata, M., Ikeda, D., Furutani, Y., and Kandori, H. (2008) Color change of proteorhodopsin by a single amino acid replacement at a distant cytoplasmic loop Angew. Chem., Int. Ed. 47, 3923-3926
-
(2008)
Angew. Chem., Int. Ed.
, vol.47
, pp. 3923-3926
-
-
Yoshitsugu, M.1
Shibata, M.2
Ikeda, D.3
Furutani, Y.4
Kandori, H.5
-
38
-
-
66149177016
-
Color-changing mutation in the E-F loop of proteorhodopsin
-
Yoshitsugu, M., Yamada, J., and Kandori, H. (2009) Color-Changing Mutation in the E-F Loop of Proteorhodopsin Biochemistry 48, 4324-4330
-
(2009)
Biochemistry
, vol.48
, pp. 4324-4330
-
-
Yoshitsugu, M.1
Yamada, J.2
Kandori, H.3
-
39
-
-
33845378460
-
Model compounds for the study of spectroscopic properties of visual pigments and bacteriorhodopsin
-
Baasov, T. and Sheves, M. (1985) Model compounds for the study of spectroscopic properties of visual pigments and bacteriorhodopsin J. Am. Chem. Soc. 107, 7524-7533
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 7524-7533
-
-
Baasov, T.1
Sheves, M.2
-
41
-
-
0037304406
-
Characterization of the photochemical reaction cycle of proteorhodopsin
-
Varo, G., Brown, L. S., Lakatos, M., and Lanyi, J. K. (2003) Characterization of the photochemical reaction cycle of proteorhodopsin Biophys. J. 84, 1202-1207 (Pubitemid 36133441)
-
(2003)
Biophysical Journal
, vol.84
, Issue.1-2
, pp. 1202-1207
-
-
Varo, G.1
Brown, L.S.2
Lakatos, M.3
Lanyi, J.K.4
-
42
-
-
0030087861
-
a increase of the chromophore counterion in bacteriorhodopsin: Implications for ion transport mechanisms of retinal proteins
-
a increase of the chromophore counterion in bacteriorhodopsin: Implications for ion transport mechanisms of retinal proteins Biophys. J. 70, 939-947
-
(1996)
Biophys. J.
, vol.70
, pp. 939-947
-
-
Braiman, M.S.1
Dioumaev, A.K.2
Lewis, J.R.3
|