The origin and fate of morphological intermediates between wild and cultivated soybeans in their natural habitats in Japan

Molecular Ecology

Volumn 19, Issue 11, 2010, Pages 2346-2360

  Kuroda, Y ^a,b   Kaga, A ^a   Tomooka, N ^a   Vaughan, D ^a,c  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b NATIONAL AGRICULTURAL RESEARCH CENTER FOR HOKKAIDO REGION   (Japan)

^c FAO Regional Office for Asia and the Pacific   (Thailand)

Author keywords

Gene flow; Genetic admixture; Morphological intermediates; Parentage assignment; Soybean

Indexed keywords

CHLOROPLAST DNA; MICROSATELLITE DNA; PLANT DNA;

ALLELE; ARTICLE; CELL NUCLEUS; CROP; ECOSYSTEM; GENE FLOW; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; HYBRIDIZATION; JAPAN; SOYBEAN; TRANSGENE; TRANSGENIC PLANT;

ALLELES; CELL NUCLEUS; CROPS, AGRICULTURAL; DNA, CHLOROPLAST; DNA, PLANT; ECOSYSTEM; GENE FLOW; GENETIC VARIATION; HAPLOTYPES; HYBRIDIZATION, GENETIC; JAPAN; MICROSATELLITE REPEATS; PLANTS, GENETICALLY MODIFIED; SOYBEANS; TRANSGENES;

GLYCINE MAX; GLYCINE SOJA;

EID: 77952709863     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04636.x     Document Type: Article

References (61)

1. Abe J, Hasegawa A, Fukushi H et al. (1999) Introgression between wild and cultivated soybeans of Japan revealed by RFLP analysis for chloroplast DNAs. Economic Botany, 53, 285 291.
2. Abud S, de Souza PIM, Moreira CT et al. (2003) Gene flow in transgenic soybean in the Cerrado region, Brazil. Pesquisa Agropecuaria Brasileira, 38, 1229 1236.
3. Annan Z, Durand P, Ayala FJ et al. (2007) Population genetic structure of Plasmodium falciparum in the two main African vectors, Anopheles gambiale and Anopheles funestus. Proceedings of the National Academy of Sciences USA, 104, 7987 7992.
4. Arnaud JF, Viard F, Delescluse M, Cuguen J (2003) Evidence for gene flow via seed dispersal from crop to wild relatives in Beta vulgaris (Chenopodiaceae): consequences for the release of genetically modified crop species with weedy lineages. Proceedings of the Royal Society of London Series B-Biological Sciences, 270, 1565 1571.
5. Broich SL, Palmer RG 1980) A cluster analysis of wild and domesticated soybean phenotypes. Euphytica, 29, 23 32.
6. Chen YW, Nelson RL (2004) Identification and characterization of a white-flowered wild soybean plant. Crop Science, 44, 339 342.
7. Chiang YC, Kiang YT (1987) Geometric position of genotypes, honeybee foraging patterns and outcrossing in soybean. Botanical Bulletin of Academia Sinica, 28, 1 11.
8. Close PS, Shoemaker RC, Keim P (1989) Distribution of restriction site polymorphism within the chloroplast genome of the genus Glycine subgenus Soja. Theoretical and Applied Genetics, 77, 768 776.
9. Cregan PB, Jarvik T, Bush AL et al. (1999) An integrated genetic linkage map of the soybean genome. Crop Science, 39, 1464 1490.
10. Dae HP, Shim KM, Lee YS et al. (1995) Evaluation of genetic diversity among the Glycine species using isozymes and RAPD. Korean Journal of Genetics, 17, 157 168.
11. Dale PJ, Clarke B, Fontes EMG (2002) Potential for the environmental impact of transgenic crops. Nature Biotechnology, 20, 567 574.
12. Dong YS, Zhuang BC, Zhao LM, Sun H, He MY (2001) The genetic diversity of annual wild soybeans grown in China. Theoretical and Applied Genetics, 103, 98 103.
13. Ellstrand NC (2003) Current knowledge of gene flow in plants: implications for transgene flow. Philosophical Transactions of the Royal Society B-Biological Sciences, 358, 1163 1170.
14. Excoffier L, Smouse P, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
15. Fujita R, Ohara M, Okazaki K, Shimamoto Y (1997) The extent of natural cross-pollination in wild soybean (Glycine soja). The Journal of Heredity, 88, 124 128.
16. Fukuda Y (1933) Cyto-genetical studies on the wild and cultivated Manchurian soy beans (Glycine L.). Japanese Journal of Botany, 6, 489 506.
17. Goudet J (2001) fstat, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www.unil.ch/izea/ softwares/fstat.html Updated from Goudet (1995).
18. Gueritaine G, Sester M, Eber F, Chevre AM, Darmency H (2002) Fitness of backcross six of hybrids between transgenic oilseed rape (Brassica napus) and wild radish (Raphanus raphanistrum). Molecular Ecology, 11, 1419 1426.
19. Harlan JR (1992) The dynamics of domestication. In : Crops and man (eds Peterson GA, Baenziger PS, Dinaver RC). pp. 115 133, American Society of Agronomy, Crop Science Society of America
20. Hatfield PM, Shoemaker RC, Palmer RG (1985) Maternal inheritance of chloroplast DNA within the genus Glycine, subgenus soja. The Journal of Heredity, 76, 373 374.
21. Hirata T, Abe J, Shimamoto Y (1996) RFLPs of chloroplast and mitochondrial genomes in summer and autumn maturing cultivar groups of soybean in Kyushu district of Japan. Soybean Genetics Newsletter, 23, 107 111.
22. Hymowitz T (1970) On the domestication of the soybean. Economic Botany, 24, 408 421.
23. Hymowitz T, Singh RJ (1987) Taxonomy and speciation. In : Soybeans: Improvement, Production, and use (ed. Wilcox JR). pp. 23 48, ASA and CSSA
24. James C (2008) Global Status of Commercialized Biotech/GM Crops: 2008. ISAAA Brief No.39. ISAAA
25. Kaga A, Tomooka N, Phuntsho U et al. (2005) Exploration and collection for hybrid derivatives between wild and cultivated soybean: preliminary survey in Akita and Hiroshima Prefectures, Japan. Annual Report on Exploration and Introduction of Plant Genetic Resources, 21, 59 71.
26. Kanazawa A, Tozuka A, Shimamoto Y (1998) Sequence variation of chloroplast DNA that involves EcoRI and ClaI restriction site polymorphisms in soybean. Genes and Genetic Systems, 73, 111 119.
27. Keim P, Diers BW, Shoemaker RC (1990) Genetic analysis of soybean hard seededness with molecular markers. Theoretical and Applied Genetics, 79, 465 469.
28. Kollipara KP, Singh RJ, Hymowitz T (1997) Phylogenetic and genomic relationships in the genus Glycine Willd. based on sequences from the ITS region of nuclear rDNA. Genome, 40, 57 68.
29. Kuroda Y, Kaga A, Apa A et al. (2005a) Exploration, collection and monitoring of wild soybean and hybrid derivatives between wild soybean and cultivated soybean: based on field surveys at Akita, Ibaraki, Aichi, Hiroshima and Saga Prefectures. Annual Report on Exploration and Introduction of Plant Genetic Resources, 21, 73 95.
30. Kuroda Y, Sato YI, Bounphanousay C, Kono Y, Tanaka K (2005b) Gene flow from cultivated rice (Oryza sativa L.) to wild Oryza species (O. rufipogon Griff. and O. nivara Sharma and Shastry) on the Vientiane plain of Laos. Euphytica, 142, 75 83.
31. Kuroda Y, Kaga A, Guaf J, Vaughan DA, Tomooka N (2006a) Exploration, collection and monitoring of wild soybean, cultivated soybean and hybrid derivatives between wild soybean and cultivated soybean: based on field surveys at Akita, Ibaraki, Kochi and Saga Prefectures. Annual Report on Exploration and Introduction of Plant Genetic Resources, 22, 1 12.
32. Kuroda Y, Kaga A, Tomooka N, Vaughan DA (2006b) Population genetic structure of Japanese wild soybean (Glycine soja) based on microsatellite variation. Molecular Ecology, 15, 959 974.
33. Kuroda Y, Kaga A, Poafa J et al. (2007) Exploration, collection and monitoring of wild soybean, cultivated soybean and hybrid derivatives between wild soybean and cultivated soybean: based on field surveys at Akita, Hyogo and Saga Prefectures. Annual Report on Exploration and Introduction of Plant Genetic Resources, 23, 9 27.
34. Kuroda Y, Kaga A, Tomooka N, Vaughan DA (2008) Gene flow and genetic structure of wild soybean (Glycine soja) in Japan. Crop Science, 48, 1071 1078.
35. Kuroda Y, Tomooka N, Kaga A, Wanigadeva SMSW, Vaughan DA (2009) Genetic diversity of wild soybean (Glycine soja Sieb. et Zucc.) and Japanese cultivated soybeans [G. max (L.) Merr.] based on microsatellite (SSR) analysis and the selection of a core collection. Genetic Resources and Crop Evolution, 56, 1045 1055.
36. Liu B, Fujita T, Yan ZH et al. (2007) QTL Mapping of domestication- related traits in soybean (Glycine max). Annals of Botany, 100, 1027 1038.
37. Lu BR (2004) Conserving biodiversity of soybean gene pool in the biotechnology era. Plant Species Biology, 19, 115 125.
38. Maughan PJ, Saghai Maroof MA, Buss GR, Huestis GM (1996) Amplified fragment length polymorphism (AFLP) in soybean: species diversity, inheritance, and near-isogenic line analysis. Theoretical and Applied Genetics, 93, 392 401.
39. Mizuguti A, Yoshimura Y, Matsuo K (2009) Flowering phenologies and natural hybridization of genetically modified and wild soybeans under field conditions. Weed Biology and Management, 9, 93 96.
40. Nakayama Y, Yamaguchi H (2002) Natural hybridization in wild soybean (Glycine max ssp. soja) by pollen flow from cultivated soybean (Glycine max ssp. max) in a designed population. Weed Biology and Management, 2, 25 30.
41. Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences USA, 70, 3321 3323.
42. Parker PG, Snow AA, Schug MD, Booton GC, Fuerst PA (1998) What molecules can tell us about populations: choosing and using a molecular marker. Ecology, 79, 361 382.
43. Powell AA, Matthews S (1978) The damaging effect of water on dry pea embryos during imbibition. Journal of Experimental Botany, 29, 1215 1229.
44. Powell W, Morgante M, Doyle JJ et al. (1996) Genepool variation in genus Glycine subgenus Soja revealed by polymorphic nuclear and chloroplast microsatellites. Genetics, 144, 793 803.
45. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
46. Ray JD, Kilen TC, Abel CA, Paris RL (2003) Soybean natural cross-pollination rates under field conditions. Environmental Biosafety Research, 2, 133 138.
47. Schneider S, Roessli D, Excoffier L (2000) Arlequin: A Software for Population Genetic Data. Genetics and Biometry Laboratory, University of Geneva
48. Sekizuka S, Yoshiyama T (1960) Studies on the native wild grasses for fodder. (IV) crop-scientific studies on wild species of Glycine soja in Japan. Journal of Kanto-Tosan Agricultural Experimental Station, 15, 57 73.
49. Shibaike H, Yoshimura Y (2005) The impacts of GMO crops on ecosystem -Pollen dispersal and crossing of self-fertile crops: Rice and Soybean-. Agriculture and Horticulture, 80, 1, 140 149.
50. Shimamoto Y, Fukushi H, Abe J et al. (1998) RFLPs of chloroplast and mitochondrial DNA in wild soybean, Glycine soja, growing in China. Genetic Resources and Crop Evolution, 45, 433 439.
51. Shimamoto Y, Abe J, Gao Z, Gai JY, Thseng FS (2000) Characterizing the cytoplasmic diversity and phyletic relationship of Chinese landraces of soybean, Glycine max, based on RFLPs of chloroplast and mitochondrial DNA. Genetic Resources and Crop Evolution, 47, 611 617.
52. Singh RJ, Hymowitz T (1989) The genomic relationships among Glycine soja Sieb. and Zucc., G. max (L.) Merr., and 'G. gracilis' Skvortz. Plant Breeding, 103, 171 173.
53. Skvortzow BV (1927) The soybean-wild and cultivated in Eastern Asia. Proceedings of the Manchurian Research Society Publication, Service A Natural History Selection, 22, 1 8.
54. Stale J, Marshall T, Pemberton J (2000) A retrospective assignment of the accuracy of the paternity inference program CERVUS. Molecular Ecology, 9, 801 808.
55. Stewart CN, Halfhill MD, Warwick SI (2003) Transgene introgression from genetically modified crops to their wild relatives. Nature Reviews Genetics, 4, 806 817.
56. The R Development Core Team (2009) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing
57. Tomooka N, Kaga A, Isemura T et al. (2008) Collection and conservation leguminous crops and their wild relatives in Japan, 2007. Annual Report on Exploration and Introduction of Plant Genetic Resources, 24, 9 19.
58. Ward SM, Jasieniuk M (2009) Review: Sampling weedy and invasive plant populations for genetic diversity analysis. Weed Science, 57, 593 602.
59. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
60. Xu DH, Gai JY (2003) Genetic diversity of wild and cultivated soybeans growing in China revealed by RAPD analysis. Plant Breeding, 122, 503 506.
61. Xu DH, Abe J, Gai JY, Shimamoto Y (2002) Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: Evidence for multiple origins of cultivated soybean. Theoretical and Applied Genetics, 105, 645 653.