-
1
-
-
0042125048
-
Revising regulatory networks: From expression data to linear causal models
-
S. Bay, J. Shrager, A. Pohorille, and P. Langley. Revising regulatory networks: From expression data to linear causal models. Journal of Biomedical Informatics, 35:289-297, 2003.
-
(2003)
Journal of Biomedical Informatics
, vol.35
, pp. 289-297
-
-
Bay, S.1
Shrager, J.2
Pohorille, A.3
Langley, P.4
-
3
-
-
42749086920
-
Modeling Biological Networks by Action Languages via Answer Set Programming
-
S. Dworschak, S. Grell, V. Nikiforova, T. Schaub, and J. Selbig. Modeling Biological Networks by Action Languages via Answer Set Programming. Constraints, 13(1-2):21-65, 2008.
-
(2008)
Constraints
, vol.13
, Issue.1-2
, pp. 21-65
-
-
Dworschak, S.1
Grell, S.2
Nikiforova, V.3
Schaub, T.4
Selbig, J.5
-
4
-
-
0042185583
-
Pathway Logic: Executable models of biological networks
-
S. Eker, M. Knapp, K. Laderoute, P. Lincoln, and C. Talcott. Pathway Logic: Executable models of biological networks. In Proc. 4th Int. Workshop on Rewriting Logic and Its Applications, 2002.
-
Proc. 4th Int. Workshop on Rewriting Logic and Its Applications, 2002
-
-
Eker, S.1
Knapp, M.2
Laderoute, K.3
Lincoln, P.4
Talcott, C.5
-
7
-
-
77951505493
-
Classical negation in logic programs and disjunctive databases
-
M. Gelfond and V. Lifschitz. Classical negation in logic programs and disjunctive databases. New Generation Computing, 9(3/4):365-386, 1991.
-
(1991)
New Generation Computing
, vol.9
, Issue.3-4
, pp. 365-386
-
-
Gelfond, M.1
Lifschitz, V.2
-
8
-
-
23144464696
-
GenePath: From mutations to genetic networks and back
-
P. Juvan, J. Demsar, G. Shaulsky, and B. Zupan. GenePath: from mutations to genetic networks and back. Nucleic Acids Res., 33, 2005.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Juvan, P.1
Demsar, J.2
Shaulsky, G.3
Zupan, B.4
-
9
-
-
18744388601
-
On the use of qualitative reasoning to simulate and identify metabolic pathways
-
R. King, S. Garrett, and G. Coghill. On the use of qualitative reasoning to simulate and identify metabolic pathways. Bioinformatics, 21(9):2017-2026, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2017-2026
-
-
King, R.1
Garrett, S.2
Coghill, G.3
-
10
-
-
64249139133
-
The automation of science
-
R. King, J. Rowland, S. Oliver, M. Young, W. Aubrey, E. Byrne, M. Liakata, M. Markham, P. Pir, L. Soldatova, A. Sparkes, K. Whelan, and A. Clare. The automation of science. Science, 324(5923):85-89, 2009.
-
(2009)
Science
, vol.324
, Issue.5923
, pp. 85-89
-
-
King, R.1
Rowland, J.2
Oliver, S.3
Young, M.4
Aubrey, W.5
Byrne, E.6
Liakata, M.7
Markham, M.8
Pir, P.9
Soldatova, L.10
Sparkes, A.11
Whelan, K.12
Clare, A.13
-
11
-
-
1642336155
-
Functional Genomic Hypothesis Generation and Experimentation by a Robot Scientist
-
R. King, K. Whelan, F. Jones, P. Reiser, C. Bryant, S. Muggleton, D. Kell, and S. Oliver. Functional Genomic Hypothesis Generation and Experimentation by a Robot Scientist. Nature, 427:247-252, 2004.
-
(2004)
Nature
, vol.427
, pp. 247-252
-
-
King, R.1
Whelan, K.2
Jones, F.3
Reiser, P.4
Bryant, C.5
Muggleton, S.6
Kell, D.7
Oliver, S.8
-
14
-
-
77951503082
-
Inverse Entailment and Progol
-
S. Muggleton. Inverse Entailment and Progol. New Generation Computing, 13(3-4):245-286, 1995.
-
(1995)
New Generation Computing
, vol.13
, Issue.3-4
, pp. 245-286
-
-
Muggleton, S.1
-
15
-
-
84954424598
-
Theory Completion Using Inverse Entailment
-
Proc. 10th Int. Conf. on Inductive Logic Programming, Springer
-
S. Muggleton and C. Bryant. Theory Completion Using Inverse Entailment. In Proc. 10th Int. Conf. on Inductive Logic Programming, volume 1866 of LNCS, pages 130-146. Springer, 2000.
-
(2000)
LNCS
, vol.1866
, pp. 130-146
-
-
Muggleton, S.1
Bryant, C.2
-
16
-
-
67349139131
-
Nonmonotonic abductive inductive learning
-
O. Ray. Nonmonotonic abductive inductive learning. Journal of Applied Logic, 7(3):329-340, 2009.
-
(2009)
Journal of Applied Logic
, vol.7
, Issue.3
, pp. 329-340
-
-
Ray, O.1
-
20
-
-
70349728370
-
A nonmonotonic logical approach for modelling and revising metabolic networks
-
IEEE
-
O. Ray, K. Whelan, and R. King. A nonmonotonic logical approach for modelling and revising metabolic networks. In Proc. 3rd Int. Conf. on Complex, Intelligent and Software Intensive Systems, pages 825-829. IEEE, 2009.
-
(2009)
Proc. 3rd Int. Conf. on Complex, Intelligent and Software Intensive Systems
, pp. 825-829
-
-
Ray, O.1
Whelan, K.2
King, R.3
-
21
-
-
69949155209
-
Metabolic Network Expansion with Answer Set Programming
-
Proc. 25th Int. Conf. on Logic programming, Springer
-
T. Schaub and S. Thiele. Metabolic Network Expansion with Answer Set Programming. In Proc. 25th Int. Conf. on Logic programming, volume 5649 of LNCS, pages 312-326. Springer, 2009.
-
(2009)
LNCS
, vol.5649
, pp. 312-326
-
-
Schaub, T.1
Thiele, S.2
-
22
-
-
22944452109
-
Modelling inhibition in metabolic pathways through abduction and induction
-
Proc. 14th Int. Conf. on Inductive Logic Programming, Springer
-
A. Tamaddoni-Nezhad, A. Kakas, S. Muggleton, and F. Pazos. Modelling inhibition in metabolic pathways through abduction and induction. In Proc. 14th Int. Conf. on Inductive Logic Programming, volume 3194 of LNCS, pages 305-322. Springer, 2004.
-
(2004)
LNCS
, vol.3194
, pp. 305-322
-
-
Tamaddoni-Nezhad, A.1
Kakas, A.2
Muggleton, S.3
Pazos, F.4
-
23
-
-
70349745315
-
Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets
-
IEEE
-
T. Tamura, K. Takemoto, and T. Akutsu. Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets. In Proc. 3rd Int. Conf. on Complex, Intelligent and Software Intensive Systems, pages 819-824. IEEE, 2009.
-
(2009)
Proc. 3rd Int. Conf. on Complex, Intelligent and Software Intensive Systems
, pp. 819-824
-
-
Tamura, T.1
Takemoto, K.2
Akutsu, T.3
-
24
-
-
38149060100
-
Analyzing pathways using sat-based approaches
-
Proc. 2nd Int. Conf. on Algebraic Biology, Springer
-
A. Tiwari, C. Talcott, M. Knapp, P. Lincoln, and K. Laderoute. Analyzing pathways using sat-based approaches. In Proc. 2nd Int. Conf. on Algebraic Biology, volume 4545 of LNCS, pages 155-169. Springer, 2007.
-
(2007)
LNCS
, vol.4545
, pp. 155-169
-
-
Tiwari, A.1
Talcott, C.2
Knapp, M.3
Lincoln, P.4
Laderoute, K.5
-
25
-
-
41449096058
-
Using a logical model to predict the growth of yeast
-
K. Whelan and R. King. Using a logical model to predict the growth of yeast. BMC Bioinformatics, 9(97), 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.97
-
-
Whelan, K.1
King, R.2
-
26
-
-
79959297000
-
Integrating abduction and induction in biological inference using CF-Induction
-
John Wiley and Sons. To appear
-
Y. Yamamoto, K. Inoue, and A. Doncescu. Integrating abduction and induction in biological inference using CF-Induction. In Elements of Computational Systems Biology. John Wiley and Sons. To appear.
-
Elements of Computational Systems Biology
-
-
Yamamoto, Y.1
Inoue, K.2
Doncescu, A.3
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