메뉴 건너뛰기




Volumn 26, Issue 1, 2010, Pages 91-106

An association transcriptomics approach to the prediction of hybrid performance

Author keywords

Genetic architecture; Heterosis; Hybrid vigour; Transcriptome; Yield

Indexed keywords

ANIMALS; FORECASTING; GENE EXPRESSION; PLANTS (BOTANY);

EID: 77952424789     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-009-9379-3     Document Type: Article
Times cited : (20)

References (53)
  • 1
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative (2000) Analysis of the genome of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 0038235211 scopus 로고    scopus 로고
    • Heterosis for biomass yield and related traits in five hybrids of Arabidopsis thaliana L. Heynh
    • Barth S, Busimi AK, Utz HF, Melchinger AE (2003) Heterosis for biomass yield and related traits in five hybrids of Arabidopsis thaliana L. Heynh. Heredity 91: 36-42.
    • (2003) Heredity , vol.91 , pp. 36-42
    • Barth, S.1    Busimi, A.K.2    Utz, H.F.3    Melchinger, A.E.4
  • 4
    • 0028141065 scopus 로고
    • Prediction of maize single-cross performance using RFLPs and information from related hybrids
    • Bernardo R (1994) Prediction of maize single-cross performance using RFLPs and information from related hybrids. Crop Sci 34: 20-25.
    • (1994) Crop Sci , vol.34 , pp. 20-25
    • Bernardo, R.1
  • 5
    • 0030037540 scopus 로고    scopus 로고
    • Best linear unbiased prediction of maize single-cross performance
    • Bernardo R (1996) Best linear unbiased prediction of maize single-cross performance. Crop Sci 36: 50-56.
    • (1996) Crop Sci , vol.36 , pp. 50-56
    • Bernardo, R.1
  • 6
    • 4344583223 scopus 로고    scopus 로고
    • Predicting the performance of untested single crosses: Trait and marker data
    • K. R. Lamkey and J. E. Staub (Eds.), Madison: Crop Science Society of America
    • Bernardo R (1998) Predicting the performance of untested single crosses: trait and marker data. In: Lamkey KR, Staub JE (eds) Concepts and breeding of heterosis in crop plants. Crop Science Society of America, Madison, pp 117-127.
    • (1998) Concepts and Breeding of Heterosis in Crop Plants , pp. 117-127
    • Bernardo, R.1
  • 7
    • 0032862017 scopus 로고    scopus 로고
    • Marker-assisted best linear unbiased prediction of singlecross performance
    • Bernardo R (1999) Marker-assisted best linear unbiased prediction of singlecross performance. Crop Sci 39: 1277-1282.
    • (1999) Crop Sci , vol.39 , pp. 1277-1282
    • Bernardo, R.1
  • 8
    • 0035875867 scopus 로고    scopus 로고
    • Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits
    • Birchler JA, Bhadra U, Bhadra MP, Auger DL (2001) Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits. Dev Biol 234: 275-288.
    • (2001) Dev Biol , vol.234 , pp. 275-288
    • Birchler, J.A.1    Bhadra, U.2    Bhadra, M.P.3    Auger, D.L.4
  • 11
    • 0001412302 scopus 로고
    • Degeneration, albinism and inbreeding
    • Davenport CB (1908) Degeneration, albinism and inbreeding. Science 28: 454-455.
    • (1908) Science , vol.28 , pp. 454-455
    • Davenport, C.B.1
  • 12
    • 85184293334 scopus 로고    scopus 로고
    • Genetic diversity and heterosis
    • C. G. Coors and S. Pandey (Eds.), Madison: American Society of Agronomy
    • Duvick DN (1999) Genetic diversity and heterosis. In: Coors CG, Pandey S (eds) Genetics and exploitation of heterosis in crops. American Society of Agronomy, Madison, pp 293-304.
    • (1999) Genetics and Exploitation of Heterosis in Crops , pp. 293-304
    • Duvick, D.N.1
  • 14
    • 0002109224 scopus 로고    scopus 로고
    • Competitive ability and plant breeding
    • Fasoula DA, Fasoula VA (1997) Competitive ability and plant breeding. Plant Breed Rev 14: 89-138.
    • (1997) Plant Breed Rev , vol.14 , pp. 89-138
    • Fasoula, D.A.1    Fasoula, V.A.2
  • 15
    • 0026901105 scopus 로고
    • Effects of breed and retained heterosis on milk yield and 200-day weight in advanced generations of composite populations of beef cattle
    • Gregory KE, Cundiff LV, Koch RM (1992) Effects of breed and retained heterosis on milk yield and 200-day weight in advanced generations of composite populations of beef cattle. J Anim Sci 70: 2366-2372.
    • (1992) J Anim Sci , vol.70 , pp. 2366-2372
    • Gregory, K.E.1    Cundiff, L.V.2    Koch, R.M.3
  • 16
    • 0141872967 scopus 로고    scopus 로고
    • Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm
    • Guo M, Rupe MA, Danilevskaya ON, Yang X, Hu Z (2003) Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. Plant J 36: 30-44.
    • (2003) Plant J , vol.36 , pp. 30-44
    • Guo, M.1    Rupe, M.A.2    Danilevskaya, O.N.3    Yang, X.4    Hu, Z.5
  • 18
    • 33747735632 scopus 로고    scopus 로고
    • Genome-wide transcript analysis of maize hybrids: Allelic additive gene expression and yield heterosis
    • Guo M, Rupe MA, Yang X, Crasta O, Zinselmeie C, Smith OS, Bowen B (2006) Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis. Theor Appl Genet 113: 831-845.
    • (2006) Theor Appl Genet , vol.113 , pp. 831-845
    • Guo, M.1    Rupe, M.A.2    Yang, X.3    Crasta, O.4    Zinselmeie, C.5    Smith, O.S.6    Bowen, B.7
  • 19
    • 0002401719 scopus 로고
    • Methods used in developing maize inbreds
    • Hallauer AR (1990) Methods used in developing maize inbreds. Maydica 35: 1-16.
    • (1990) Maydica , vol.35 , pp. 1-16
    • Hallauer, A.R.1
  • 21
    • 0031660782 scopus 로고    scopus 로고
    • Epigenetic allelic states of a maize transcriptional regulatory locus exhibit overdominant gene action
    • Hollick JB, Chandler VL (1998) Epigenetic allelic states of a maize transcriptional regulatory locus exhibit overdominant gene action. Genetics 150: 891-897.
    • (1998) Genetics , vol.150 , pp. 891-897
    • Hollick, J.B.1    Chandler, V.L.2
  • 22
    • 0037418206 scopus 로고    scopus 로고
    • Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid
    • Hua J, Xing Y, Wu W, Xu C, Sun X, Yu S, Zhang Q (2003) Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci USA 100: 2574-2579.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 2574-2579
    • Hua, J.1    Xing, Y.2    Wu, W.3    Xu, C.4    Sun, X.5    Yu, S.6    Zhang, Q.7
  • 24
    • 0019869334 scopus 로고
    • The molecular basis of dominance
    • Kacser H, Burns JA (1981) The molecular basis of dominance. Genetics 97: 639-666.
    • (1981) Genetics , vol.97 , pp. 639-666
    • Kacser, H.1    Burns, J.A.2
  • 25
    • 0018062074 scopus 로고
    • Heterosis and phenotypic correlations for shank length, body weight and egg production traits in the Alexandria strains and their crosses with Fayoumi chickens
    • Kosba MA (1978) Heterosis and phenotypic correlations for shank length, body weight and egg production traits in the Alexandria strains and their crosses with Fayoumi chickens. Beitr Trop Landwirtsch Veterinarmed 16: 187-198.
    • (1978) Beitr Trop Landwirtsch Veterinarmed , vol.16 , pp. 187-198
    • Kosba, M.A.1
  • 26
    • 0347991996 scopus 로고    scopus 로고
    • Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites
    • Liu K, Goodman M, Muse S, Smith JS, Buckler E, Doebley J (2003) Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165: 2117-2128.
    • (2003) Genetics , vol.165 , pp. 2117-2128
    • Liu, K.1    Goodman, M.2    Muse, S.3    Smith, J.S.4    Buckler, E.5    Doebley, J.6
  • 27
    • 85101891769 scopus 로고    scopus 로고
    • Genetic diversity and heterosis
    • C. G. Coors and S. Pandey (Eds.), Madison: American Society of Agronomy
    • Melchinger AE (1999) Genetic diversity and heterosis. In: Coors CG, Pandey S (eds) Genetics and exploitation of heterosis in crops. American Society of Agronomy, Madison, pp 99-1118.
    • (1999) Genetics and Exploitation of Heterosis in Crops , pp. 99-1118
    • Melchinger, A.E.1
  • 28
    • 1942533595 scopus 로고    scopus 로고
    • Heterosis of biomass production in Arabidopsis. Establishment during early development
    • Meyer RC, Torjek O, Becher M, Altmann T (2004) Heterosis of biomass production in Arabidopsis. Establishment during early development. Plant Physiol 134: 1813-1823.
    • (2004) Plant Physiol , vol.134 , pp. 1813-1823
    • Meyer, R.C.1    Torjek, O.2    Becher, M.3    Altmann, T.4
  • 29
    • 33846839271 scopus 로고    scopus 로고
    • Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern
    • Meyer S, Pospisil H, Scholten S (2007) Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern. Plant Mol Biol 63: 381-391.
    • (2007) Plant Mol Biol , vol.63 , pp. 381-391
    • Meyer, S.1    Pospisil, H.2    Scholten, S.3
  • 30
    • 0000037803 scopus 로고
    • Heterosis and genetic diversity in variety crosses of maize
    • Moll RH, Salhuana WS, Robinson HF (1962) Heterosis and genetic diversity in variety crosses of maize. Crop Sci 2: 197-198.
    • (1962) Crop Sci , vol.2 , pp. 197-198
    • Moll, R.H.1    Salhuana, W.S.2    Robinson, H.F.3
  • 33
    • 0033794889 scopus 로고    scopus 로고
    • Identification of a hybrid-specific expressed gene encoding novel RNA-binding protein in wheat seedling leaves using differential display of mRNA
    • Ni Z, Sun Q, Liu Z, Wu L, Wang X (2000) Identification of a hybrid-specific expressed gene encoding novel RNA-binding protein in wheat seedling leaves using differential display of mRNA. Mol Gen Genet 263: 934-993.
    • (2000) Mol Gen Genet , vol.263 , pp. 934-993
    • Ni, Z.1    Sun, Q.2    Liu, Z.3    Wu, L.4    Wang, X.5
  • 34
  • 35
    • 0034046086 scopus 로고    scopus 로고
    • Gene regulatory networks generating the phenomena of additivity, dominance and epistasis
    • Omholt SW, Plahte E, Oyehaug L, Xiang KF (2000) Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. Genetics 155: 969-980.
    • (2000) Genetics , vol.155 , pp. 969-980
    • Omholt, S.W.1    Plahte, E.2    Oyehaug, L.3    Xiang, K.F.4
  • 38
    • 84924269561 scopus 로고
    • What is "heterosis"?
    • Shull GH (1948) What is "heterosis"? Genetics 33: 439-446.
    • (1948) Genetics , vol.33 , pp. 439-446
    • Shull, G.H.1
  • 39
    • 0001557032 scopus 로고
    • Covariance between line per se and testcross performance
    • Smith OS (1986) Covariance between line per se and testcross performance. Crop Sci 26: 540-543.
    • (1986) Crop Sci , vol.26 , pp. 540-543
    • Smith, O.S.1
  • 40
    • 0042307299 scopus 로고    scopus 로고
    • Gene expression of a gene family in maize based on nonlinear haplotypes
    • Song R, Messing J (2003) Gene expression of a gene family in maize based on nonlinear haplotypes. Proc Natl Acad Sci USA 100: 9055-9060.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9055-9060
    • Song, R.1    Messing, J.2
  • 41
    • 34249024372 scopus 로고    scopus 로고
    • Evaluating the utility of Arabidopsis thaliana as a model for understanding heterosis in hybrid crops
    • Stokes D, Morgan C, O'Neill CM, Bancroft I (2007) Evaluating the utility of Arabidopsis thaliana as a model for understanding heterosis in hybrid crops. Euphytica 156: 157-171.
    • (2007) Euphytica , vol.156 , pp. 157-171
    • Stokes, D.1    Morgan, C.2    O'Neill, C.M.3    Bancroft, I.4
  • 42
    • 33747866029 scopus 로고    scopus 로고
    • Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid
    • Stupar RM, Springer NM (2006) Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics 173: 2199-2210.
    • (2006) Genetics , vol.173 , pp. 2199-2210
    • Stupar, R.M.1    Springer, N.M.2
  • 44
    • 0032893556 scopus 로고    scopus 로고
    • Differential gene expression between wheat hybrids and their parental inbreds in seedling leaves
    • Sun QX, Ni ZF, Liu ZY (1999) Differential gene expression between wheat hybrids and their parental inbreds in seedling leaves. Euphytica 106: 117-123.
    • (1999) Euphytica , vol.106 , pp. 117-123
    • Sun, Q.X.1    Ni, Z.F.2    Liu, Z.Y.3
  • 45
    • 33646486694 scopus 로고    scopus 로고
    • All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents
    • Swanson-Wagner RA et al (2006) All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci USA 103: 6805-6810.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6805-6810
    • Swanson-Wagner, R.A.1
  • 46
    • 33845614089 scopus 로고    scopus 로고
    • Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height
    • Uzarowska A, Keller B, Piepho H-P, Schwarz G, Ingvardsen C, Wenzel G, Lübberstedt T (2007) Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height. Plant Mol Biol 63: 21-34.
    • (2007) Plant Mol Biol , vol.63 , pp. 21-34
    • Uzarowska, A.1    Keller, B.2    Piepho, H.-P.3    Schwarz, G.4    Ingvardsen, C.5    Wenzel, G.6    Lübberstedt, T.7
  • 47
    • 0033791949 scopus 로고    scopus 로고
    • Chromosomal regions involved in hybrid performance and heterosis: Their AFLP (R)-based identification and practical use in prediction models
    • Vuylsteke M, Kuiper M, Stam P (2000) Chromosomal regions involved in hybrid performance and heterosis: their AFLP (R)-based identification and practical use in prediction models. Heredity 85: 208-218.
    • (2000) Heredity , vol.85 , pp. 208-218
    • Vuylsteke, M.1    Kuiper, M.2    Stam, P.3
  • 48
    • 32544437127 scopus 로고    scopus 로고
    • Genetic analysis of variation in gene expression in Arabidopsis thaliana
    • Vuylsteke M, van Eeuwijk F, van Hummelen P, Kuiper M, Zabeau M (2005) Genetic analysis of variation in gene expression in Arabidopsis thaliana. Genetics 171: 1267-1275.
    • (2005) Genetics , vol.171 , pp. 1267-1275
    • Vuylsteke, M.1    van Eeuwijk, F.2    van Hummelen, P.3    Kuiper, M.4    Zabeau, M.5
  • 49
    • 0345117252 scopus 로고    scopus 로고
    • Cloning and characterization of leaf cDNAs that are differentially expressed between wheat hybrids and their parents
    • Wu LM, Ni ZF, Meng FR, Lin Z, Sun QX (2003) Cloning and characterization of leaf cDNAs that are differentially expressed between wheat hybrids and their parents. Mol Gen Genomics 270: 281-286.
    • (2003) Mol Gen Genomics , vol.270 , pp. 281-286
    • Wu, L.M.1    Ni, Z.F.2    Meng, F.R.3    Lin, Z.4    Sun, Q.X.5
  • 50
    • 0029035408 scopus 로고
    • Dominance is the major genetic-basis of heterosis in rice as revealed by qtl analysis using molecular markers
    • Xiao JH, Li JM, Yuan LP, Tanksley SD (1995) Dominance is the major genetic-basis of heterosis in rice as revealed by qtl analysis using molecular markers. Genetics 140: 745-754.
    • (1995) Genetics , vol.140 , pp. 745-754
    • Xiao, J.H.1    Li, J.M.2    Yuan, L.P.3    Tanksley, S.D.4
  • 51
    • 0031960404 scopus 로고    scopus 로고
    • Relationships of differential gene expression in leaves with heterosis and heterozygosity in a rice diallel cross
    • Xiong LZ, Yang GP, Xu CG, Zhang QF, Maroof MAS (1998) Relationships of differential gene expression in leaves with heterosis and heterozygosity in a rice diallel cross. Mol Breed 4: 129-136.
    • (1998) Mol Breed , vol.4 , pp. 129-136
    • Xiong, L.Z.1    Yang, G.P.2    Xu, C.G.3    Zhang, Q.F.4    Maroof, M.A.S.5
  • 52
    • 21744445252 scopus 로고    scopus 로고
    • Hybrid performance and AFLP- based genetic similarity in faba bean
    • Zeid M, Schön C-C, Link W (2004) Hybrid performance and AFLP- based genetic similarity in faba bean. Euphytica 139: 207-216.
    • (2004) Euphytica , vol.139 , pp. 207-216
    • Zeid, M.1    Schön, C.-C.2    Link, W.3
  • 53
    • 0034524684 scopus 로고    scopus 로고
    • Large-scale profiling of the Arabidopsis transcriptome
    • Zhu T, Wang X (2000) Large-scale profiling of the Arabidopsis transcriptome. Plant Physiol 124: 1472-1476.
    • (2000) Plant Physiol , vol.124 , pp. 1472-1476
    • Zhu, T.1    Wang, X.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.