Abnormal levels of transcript abundance of developmentally important genes in various stages of preimplantation bovine somatic cell nuclear transfer embryos

Cellular Reprogramming

Volumn 12, Issue 1, 2010, Pages 23-32

  Aston, Kenneth I ^a   Li, Guan Peng ^a   Hicks, Brady A ^b   Sessions, Benjamin R ^a   Davis, Aaron P ^a   Rickords, Lee F ^a   Stevens, John R ^a   White, Kenneth L ^a  

^a UTAH STATE UNIVERSITY   (United States)

^b J R SIMPLOT COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; LIPOCORTIN 1; OCTAMER TRANSCRIPTION FACTOR 4; THROMBOSPONDIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP2 GAMMA; TRANSCRIPTION FACTOR SLUG; TUMOR ASSOCIATED CALCIUM SIGNAL TRANSDUCER 1; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BLASTOCYST; CELL MATURATION; CELL NUCLEUS TRANSPLANTATION; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; FERTILIZATION IN VITRO; FIBROBLAST; GENE EXPRESSION; GENETIC SELECTION; GENETIC TRANSCRIPTION; MICROARRAY ANALYSIS; MORULA; NONHUMAN; OOCYTE; PREIMPLANTATION EMBRYO; PRIORITY JOURNAL; PROTEIN DOMAIN; REAL TIME POLYMERASE CHAIN REACTION; ANIMAL; ANIMAL DISEASE; ANIMAL EMBRYO; CATTLE; CELL CULTURE; CELL NUCLEUS; CYTOLOGY; EMBRYO CULTURE; FEMALE; GENE; GENETICS; METABOLISM; PRENATAL DEVELOPMENT;

BOVINAE; GASTROPODA;

ANIMALS; BLASTOCYST; CATTLE; CELL NUCLEUS; CELLS, CULTURED; EMBRYO CULTURE TECHNIQUES; EMBRYO, MAMMALIAN; EMBRYONIC DEVELOPMENT; FEMALE; FIBROBLASTS; GENE EXPRESSION; GENES; MORULA; NUCLEAR TRANSFER TECHNIQUES; OOCYTES; TRANSCRIPTION FACTORS;

EID: 77952316152     PISSN: 21524971     EISSN: 21524998     Source Type: Journal    
DOI: 10.1089/cell.2009.0042     Document Type: Article

References (74)

1. Alberio, R., and Campbell, K.H. (2003). Epigenetics and nuclear transfer. Lancet 361, 1239-1240.
2. Arnold, D.R., Bordignon, V., Lefebvre, R., et al. (2006). Somatic cell nuclear transfer alters peri-implantation trophoblast differentiation in bovine embryos. Reproduction 132, 279-290. (Pubitemid 44269709)
3. Aston, K.I., Li, G.P., Hicks, B.A., et al. (2006). The developmental competence of bovine nuclear transfer embryos derived from cow versus heifer cytoplasts. Anim. Reprod. Sci. 95:234-243.
4. Aston, K.I., Li, G.P., Hicks, B.A., et al. (2009a). Global gene expression analysis of bovine somatic cell nuclear transfer blas-tocysts and cotyledons. Mol. Reprod. Dev. 76, 471-482.
5. Aston, K.I., Li, G.P., Hicks, B.A., et al. (2009b). Genetic repro-gramming of transcription factor ap-2gamma in bovine somatic cell nuclear transfer preimplantation embryos and placentomes. Cloning Stem Cells 11, 177-186.
6. Auman, H.J., Nottoli, T., Lakiza, O., et al. (2002). Transcription factor AP-2gamma is essential in the extra-embryonic lineages for early postimplantation development. Development 129, 2733-2747.
7. Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300.
8. Beyhan, Z., Ross, P.J., Iager, A.E., et al. (2007). Transcriptional reprogramming of somatic cell nuclei during preimplantation development of cloned bovine embryos. Dev. Biol. 305, 637-649.
9. Boiani, M., Eckardt, S., Scholer, H.R., et al. (2002). Oct4 distribution and level in mouse clones: consequences for plur-ipotency. Genes Dev. 16, 1209-1219.
10. Booth, P.J., Viuff, D., Tan, S., et al. (2003). Numerical chromosome errors in day 7 somatic nuclear transfer bovine blasto-cysts. Biol. Reprod. 68, 922-928.
11. Bortvin, A., Eggan, K., Skaletsky, H., et al. (2003). Incomplete reactivation of Oct4-related genes in mouse embryos cloned from somatic nuclei. Development 130, 1673-1680.
12. Bourc'his, D., Le Bourhis, D., Patin, D., et al. (2001). Delayed and incomplete reprogramming of chromosome methylation patterns in bovine cloned embryos. Curr. Biol. 11, 1542-1546.
13. Cezar, G.G., Bartolomei, M.S., Forsberg, E.J., et al. (2003). Genome-wide epigenetic alterations in cloned bovine fetuses. Biol. Reprod. 68, 1009-1014.
14. Cobaleda, C., Perez-Caro, M., Vicente-Duenas, C., et al. (2007). Function of zinc-finger transcription factor SNA12 in cancer and development. Annu. Rev. Genet. 41, 41-61.
15. Constant, F., Guillomot, M., Heyman, Y., et al. (2006). Large offspring or large placenta syndrome? Morphometric analysis of late gestation bovine placentomes from somatic nuclear transfer pregnancies complicated by hydrallantois. Biol. Re-prod. 75, 122-130.
16. Dean, W., Santos, F., Stojkovic, M., et al. (2001). Conservation of methylation reprogramming in mammalian development: aberrant reprogramming in cloned embryos. Proc. Natl. Acad. Sci. USA 98, 13734-13738.
17. Dean, W., Santos, F., and Reik, W. (2003). Epigenetic repro-gramming in early mammalian development and following somatic nuclear transfer. Semin. Cell Dev. Biol. 14, 93-100.
18. Enright, B.P., Jeong, B.S., Yang, X., et al. (2003). Epigenetic characteristics of bovine donor cells for nuclear transfer: levels of histone acetylation. Biol. Reprod. 69, 1525-1530.
19. Enright, B.P., Sung, L.Y., Chang, C.C., et al. (2005). Methylation and acetylation characteristics of cloned bovine embryos from donor cells treated with 5-aza-2-deoxycytidine. Biol. Reprod. 72, 944-948.
20. Everts, R.E., Chavatte-Palmer, P., Razzak, A., et al. (2008). Aberrant gene expression patterns in placentomes are associated with phenotypically normal and abnormal cattle cloned by somatic cell nuclear transfer. Physiol. Genomics 33, 65-77.
21. Fletcher, C.J., Roberts, C.T., Hartwich, K.M., et al. (2007). Somatic cell nuclear transfer in the sheep induces placental defects that likely precede fetal demise. Reproduction 133, 243-255.
22. Gao, T., Zheng, J., Xing, F., et al. (2007). Nuclear reprogramming: the strategy used in normal development is also used in somatic cell nuclear transfer and parthenogenesis. Cell Res. 17, 135-150.
23. Gerke, V., and Moss, S.E. (2002). Annexins: from structure to function. Physiol. Rev. 82, 331-371.
24. Gurdon, J.B., Laskey, R.A., De Robertis, E.M., et al. (1979). Re-programming of transplanted nuclei in amphibia. Int. Rev. Cytol. Suppl, 161-178.
25. Han, D.W., Song, S.J., Uhum, S.J., et al. (2003). Expression of IGF2 and IGF receptor mRNA in bovine nuclear transferred embryos. Zygote 11, 245-252.
26. Hashizume, K., Ishiwata, H., Kizaki, K., et al. (2002). Implantation and placental development in somatic cell clone recipient cows. Cloning Stem Cells 4, 197-209.
27. Herath, C.B., Ishiwata, H., Shiojima, S., et al. (2006). Developmental aberrations of liver gene expression in bovine fetuses derived from somatic cell nuclear transplantation. Cloning Stem Cells 8, 79-95.
28. Heyman, Y., Chavatte-Palmer, P., LeBourhis, D., et al. (2002). Frequency and occurrence of late-gestation losses from cattle cloned embryos. Biol. Reprod. 66, 6-13.
29. Hill, J.R., Roussel, A.J., Cibelli, J.B., et al. (1999). Clinical and pathologic features of cloned transgenic calves and fetuses (13 case studies). Theriogenology 51, 1451-1465.
30. Hill, J.R., Winger, Q.A., Long, C.R., et al. (2000). Development rates of male bovine nuclear transfer embryos derived from adult and fetal cells. Biol. Reprod. 62, 1135-1140.
31. Hill, J.R., Schlafer, D.H., Fisher, P.J., et al. (2002). Abnormal expression of trophoblast major histocompatibility complex class I antigens in cloned bovine pregnancies is associated with a pronounced endometrial lymphocytic response. Biol. Reprod. 67, 55-63.
32. Humpherys, D., Eggan, K., Akutsu, H., et al. (2002). Abnormal gene expression in cloned mice derived from embryonic stem cell and cumulus cell nuclei. Proc. Natl. Acad. Sci. USA 99, 12889-12894.
33. Irizarry, R.A., Bolstad, B.M., Collin, F., et al. (2003). Summaries of affymetrix GeneChip probe level data. Nucleic Acids Res. 31, e15.
34. Iruela-Arispe, M.L., Liska, D.J., Sage, E.H., et al. (1993). Differential expression of thrombospondin 1, 2, and 3 during murine development. Dev. Dyn. 197, 40-56.
35. Kang, Y.K., Koo, D.B., Park, J.S., et al. (2001). Typical de-methylation events in cloned pig embryos. Clues on species-specific differences in epigenetic reprogramming of a cloned donor genome. J. Biol. Chem. 276, 39980-39984.
36. Kang, Y.K., Park, J.S., Koo, D.B., et al. (2002). Limited de-methylation leaves mosaic-type methylation states in cloned bovine pre-implantation embryos. EMBO J 21, 1092-1100.
37. Kato, Y., Tani, T., and Tsunoda,Y. (2000). Cloning of calves from various somatic cell types of male and female adult, newborn and fetal cows. J. Reprod. Fertil. 120, 231-237.
38. Kim, B.K., Lee, S.C., Lee, K.S., et al. (2002). Effect of medium milieu on sperm penetration and pronuclear formation of bovine oocytes matured in vitro. Theriogenology 57, 2093-2104.
39. Kremenskoy, M., Kremenska, Y., Suzuki, M., et al. (2006). DNA methylation profiles of donor nuclei cells and tissues of cloned bovine fetuses. J. Reprod. Dev. 52, 259-266.
40. Lawrence, J.L., Schrick, F.N., Hopkins, F.M., et al. (2005). Fetal losses and pathologic findings of clones derived from serum-starved versus serum-fed bovine ovarian granulosa cells. Re-prod. Biol. 5, 171-184.
41. Li, G.P., Bunch, T.D., White, K.L., et al. (2004a). Development, chromosomal composition, and cell allocation of bovine cloned blastocyst derived from chemically assisted enucle-ation and cultured in conditioned media. Mol. Reprod. Dev. 68, 189-197.
42. Li, G.P., White, K.L., Aston, K.I., et al. (2004b). Conditioned medium increases the polyploid cell composition of bovine somatic cell nuclear-transferred blastocysts. Reproduction 127, 221-228.
43. Li, M., and Kellems, R.E. (2003). Sp1 and Sp3 Are important regulators of AP-2gamma gene transcription. Biol. Reprod. 69, 1220-1230.
44. Li, S., Li, Y., Du, W., et al. (2005). Aberrant gene expression in organs of bovine clones that die within two days after birth. Biol. Reprod. 72, 258-265.
45. Livak, K.J., and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25, 402-408.
46. Mann, M.R., Chung, Y.G., Nolen, L.D., et al. (2003). Disruption of imprinted gene methylation and expression in cloned pre-implantation stage mouse embryos. Biol. Reprod. 69, 902-914.
47. Matin, M.M., Walsh, J.R., Gokhale, P.J., et al. (2004). Specific knockdown of Oct4 and beta2-microglobulin expression by RNA interference in human embryonic stem cells and embryonic carcinoma cells. Stem Cells 22, 659-668.
48. Ng, R.K., and Gurdon, J.B. (2005). Epigenetic memory of active gene transcription is inherited through somatic cell nuclear transfer. Proc. Natl. Acad. Sci. USA 102, 1957-1962.
49. Niemann, H., Wrenzycki, C., Lucas-Hahn, A., et al. (2002). Gene expression patterns in bovine in vitro-produced and nuclear transfer-derived embryos and their implications for early development. Cloning Stem Cells 4, 29-38.
50. Niwa, H., Miyazaki, J., Smith, A.G. (2000). Quantitative expression of Oct-3=4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat. Genet. 24, 372-376.
51. Oback, B., and Wells. D.N. (2007). Cloning cattle: the methods in the madness. Adv. Exp. Med. Biol. 591, 30-57.
52. Ogura, A., Inoue, K., Ogonuki, N., et al. (2002). Phenotypic effects of somatic cell cloning in the mouse. Cloning Stem Cells 4, 397-405.
53. Oishi, M., Gohma, H., Hashizume, K., et al. (2006). Early embryonic death-associated changes in genome-wide gene expression profiles in the fetal placenta of the cow carrying
54. Pfister-Genskow, M., Myers, C., Childs, L.A., et al. (2005). Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: improper reprogramming of genes required for development. Biol. Reprod. 72, 546-555.
55. Powell, A.M., Talbot, N.C., Wells, K.D., et al. (2004). Cell donor influences success of producing cattle by somatic cell nuclear transfer. Biol. Reprod. 71, 210-216.
56. Reed, W.A., Suh, T.K., Bunch, T.D., et al. (1996). Culture of in vitro fertilized bovine embryos with bovine oviductal epithelial cells, Buffalo rat liver (BRL) cells, or BRL-cell-conditioned medium. Theriogenology 45, 439-449.
57. Rosenkrans, C.F., Jr., and First, N.L. (1994). Effect of free amino acids and vitamins on cleavage and developmental rate of bovine zygotes in vitro. J. Anim. Sci. 72, 434-437.
58. Rozen, S., and Skaletsky, H. (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132, 365-386.
59. Santos, F., Zakhartchenko, V., Stojkovic, M., et al. (2003). Epi-genetic marking correlates with developmental potential in cloned bovine preimplantation embryos. Curr. Biol. 13, 1116-1121.
60. Schrader, A.D., Iqbal, M.J., and Jones, K.L. (2003). Gene expression in cloned bovine fetal liver. Cloning Stem Cells 5, 63-69.
61. Sefton, M., Sanchez, S., and Nieto, M.A. (1998). Conserved and divergent roles for members of the Snail family of transcription factors in the chick and mouse embryo. Development 125, 3111-3121.
62. Shi, W., and Haaf, T. (2002). Aberrant methylation patterns at the two-cell stage as an indicator of early developmental failure. Mol. Reprod. Dev. 63, 329-334.
63. Smith, C., Berg, D., Beaumont, S., et al. (2007). Simultaneous gene quantitation of multiple genes in individual bovine nuclear transfer blastocysts. Reproduction 133, 231-242.
64. Smith, S.L., Everts, R.E., Tian, X.C., et al. (2005). Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proc. Natl. Acad. Sci. USA 102, 17582-17587.
65. Smyth, G.K. (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, Article3.
66. Somers, J., Smith, C., Donnison, M., et al. (2006). Gene expression profiling of individual bovine nuclear transfer blastocysts. Reproduction 131, 1073-1084.
67. Sun, F., Fang, H., Li, R., et al. (2007). Nuclear reprogramming: the zygotic transcription program is established through an "erase-and- rebuild" strategy. Cell Res. 17, 117-134.
68. Vassena, R., Han, Z., Gao, S., et al. (2007). Tough beginnings: alterations in the transcriptome of cloned embryos during the first two cell cycles. Dev. Biol. 304, 75-89.
69. Villablanca, E.J., Renucci, A., Sapede, D., et al. (2006). Control of cell migration in the zebrafish lateral line: implication of the gene "Tumour-Associated Calcium Signal Transducer," tacstd. Dev. Dyn. 235, 1578-1588.
70. Wells, D.N., Misica, P.M., and Tervit, H.R. (1999). Production of cloned calves following nuclear transfer with cultured adult mural granulosa cells. Biol. Reprod. 60, 996-1005.
71. Winger, Q., Huang, J., Auman, H.J., et al. (2006). Analysis of transcription factor AP-2 expression and function during mouse preimplantation development. Biol. Reprod. 75, 324-333.
72. Wrenzycki, C., Wells, D., Herrmann, D., et al. (2001). Nuclear transfer protocol affects messenger RNA expression patterns in cloned bovine blastocysts. Biol. Reprod. 65, 309-317.
73. Wrenzycki, C., Lucas-Hahn, A., Herrmann, D., et al. (2002). In vitro production and nuclear transfer affect dosage compensation of the X-linked gene transcripts G6PD, PGK, and Xist in preimplantation bovine embryos. Biol. Reprod. 66, 127-134.
74. Zhou, W., Xiang, T., Walker, S., et al. (2008). Global gene expression analysis of bovine blastocysts produced by multiple methods. Mol. Reprod. Dev. 75, 744-758.