Visualization of nuclear localization of transcription factors with cyan and green fluorescent proteins in the red alga Porphyra yezoensis

Marine Biotechnology

Volumn 12, Issue 2, 2010, Pages 150-159

  Uji, Toshiki ^a   Takahashi, Megumu ^a   Saga, Naotsune ^a   Mikami, Koji ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Fluorescent protein; Nuclear localization; Porphyra yezoensis; Transcription factor; Transient gene expression

Indexed keywords

ELONGATION FACTOR; ENCODED PROTEINS; EUKARYOTIC CELLS; FLUORESCENT PROTEIN; GENOMIC INFORMATION; GREEN ALGA; GREEN FLUORESCENT PROTEIN; LAND PLANTS; MARINE RED ALGA; MOLECULAR CLONING; NUCLEAR LOCALIZATION; PORPHYRA YEZOENSIS; RED ALGAE; REEF CORALS; SUBCELLULAR LOCALIZATIONS; TRANSIENT GENE EXPRESSIONS;

ALGAE; CLONING; FLUORESCENCE; GALLIUM ALLOYS; GENES; TRANSCRIPTION FACTORS; VISUALIZATION;

TRANSCRIPTION;

CYAN FLUORESCENT PROTEIN; GREEN FLUORESCENT PROTEIN; NUCLEAR PROTEIN; PRIMER DNA; TRANSCRIPTION FACTOR;

CLONE; GENE EXPRESSION; GENETIC ANALYSIS; GENOME; PROTEIN; RED ALGA;

AMINO ACID SEQUENCE; ARTICLE; CELL NUCLEUS; DNA SEQUENCE; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PORPHYRA; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; ULTRASTRUCTURE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CELL NUCLEUS; CLONING, MOLECULAR; DNA PRIMERS; GREEN FLUORESCENT PROTEINS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PORPHYRA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

ANTHOZOA; CHLOROPHYTA; EMBRYOPHYTA; EUKARYOTA; PORPHYRA; PORPHYRA YEZOENSIS; RHODOPHYTA; ZOANTHUS SP.;

EID: 77952096118     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-009-9210-5     Document Type: Article

References (40)

1. Alexandre CM, Hennig L (2008) FLC or not FLC: the other side of vernalization. J Exp Bot 59: 1127-1135.
2. Asamizu E, Nakajima M, Kitade Y, Saga N, Nakamura Y, Tabata S (2003) Comparison of RNA expression profiles between the two generations of Porphyra yezoensis (Rhodophyta), based on expressed sequence tag frequency analysis. J Phycol 39: 923-930.
3. Babinger K, Hallmann A, Schmitt R (2006) Translational control of regA, a key gene controlling cell differentiation in Volvox carteri. Development 133: 4045-4051.
4. Bisova K, Krylov DM, Umen JG (2005) Genome-wide annotation and expression profiling of cell cycle regulatory genes in Chlamydomonas reinhardtii. Plant Physiol 137: 475-479.
5. Brendel C, Gelman L, Auwerx J (2002) Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism. Mol Endocrinol 16: 1367-1377.
6. Camuzeaux B, Spriet C, Héliot L, Coll J, Duterque-Coquillaud M (2005) Imaging Erg and Jun transcription factor interaction in living cells using fluorescence resonance energy transfer analyses. Biochem Biophys Res Commun 332: 1107-1114.
7. Chinnusamy V, Zhu J, Zhu JK (2007) Cold stress regulation of gene expression in plants. Trends Plant Sci 12: 444-451.
8. Di Stefano L, Jensen MR, Helin K (2003) E2F7, a novel E2F featuring DP-independent repression of a subset of E2F-regulated genes. EMBO J 22: 6289-6298.
9. Fukuda S, Mikami K, Uji T, Park EJ, Ohba T, Asada K, Kitade Y, Endo H, Kato I, Saga N (2008) Factors influencing efficiency of transient gene expression in the red macrophyte Porphyra yezoensis. Plant Sci 174: 329-339.
10. Goodenough U, Lin H, Lee JH (2007) Sex determination in Chlamydomonas. Semin Cell Dev Biol 18: 350-361.
11. Hu H, You J, Fang Y, Zhu X, Qi Z, Xiong L (2008) Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice. Plant Mol Biol 67: 169-181.
12. Kosugi S, Ohashi Y (2002) E2Ls, E2F-like repressors of Arabidopsis that bind to E2F. J Biol Chem 277: 16553-16558.
13. Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H (2006) A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. J Exp Bot 57: 1263-1273.
14. Li GL, Roy B, Li XH, Yue WF, Wu XF, Liu JM, Zhang CX, Miao YG (2008) Quantification of silkworm coactivator of MBF1 mRNA by SYBR Green I real-time RT-PCR reveals tissue- and stage-specific transcription levels. Mol Biol Rep 36: 1217-1223.
15. Liu QX, Jindra M, Ueda H, Hiromi Y, Hirose S (2003) Drosophila MBF1 is a co-activator for Tracheae Defective and contributes to the formation of tracheal and nervous systems. Development 130: 719-728.
16. Liu QX, Nakashima-Kamimura N, Ikeo K, Hirose S, Gojobori T (2007) Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein. Mol Biol Evol 24: 1458-1463.
17. Malone E, Fassler JS, Winston F (1993) Molecular and genetic characterization of SPT4, a gene important for transcription initiation in Saccharomyces cerevisiae. Mol Gen Genet 237: 449-459.
18. Mikami K, Uji T, Li L, Takahashi M, Yasui H, Saga N (2009) Visualization of Phosphoinositides via the development of the transient expression system of a cyan fluorescent protein in the red alga Porphyra yezoensis. Mar Biotechnol doi: 10. 1007/s10126-008-9172-z.
19. Nikaido I, Asamizu E, Nakajima M, Nakamura Y, Saga N, Tabata S (2000) Generation of 10, 154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis. DNA Res 7: 223-227.
20. Niwa Y, Hirano T, Yoshimoto K, Shimizu M, Kobayashi H (1999) Non-invasive quantitative detection and applications of non-toxic, S65T-type green fluorescent protein in living plants. Plant J 18: 455-463.
21. Nowak K, Luniak N, Meyer S, Schulze J, Mendel RR, Hänsch R (2004) Fluorescent proteins in poplar: a useful tool to study promoter function and protein localization. Plant Biol 6: 65-73.
22. Pnueli L, Hallak-Herr E, Rozenberg M, Cohen M, Goloubinoff P, Kaplan A, Mittler R (2002) Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam. Plant J 31: 319-330.
23. Prather D, Krogan NJ, Emili A, Greenblatt JF, Winston F (2005) Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae. Mol Cell Biol 25: 10122-35.
24. Qian X, Gozani SN, Yoon H, Jeon CJ, Agarwal K, Weiss MA (1993) Novel zinc finger motif in the basal transcriptional machinery: three-dimensional NMR studies of the nucleic acid binding domain of transcriptional elongation factor TFIIS. Biochemistry 32: 9944-9959.
25. Reines D, Conaway JW, Conaway RC (1996) The RNA polymerase II general elongation factors. Trends Biochem Sci 21: 351-355.
26. Robbens S, Khadaroo B, Camasses A, Derelle E, Ferraz C, Inzé D, van de Peer Y, Moreau H (2005) Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Mol Biol Evol 22: 589-597.
27. Saga N, Kitade Y (2002) Porphyra: a model plant in marine sciences. Fish Sci 68(Suppl): 1075-1078.
28. Saleh A, Lumbreras V, Lopez C, Dominguez-Puigjaner E, Kizis D, Pagès M (2006) Maize DBF1-interactor protein 1 containing an R3H domain is a potential regulator of DBF1 activity in stress responses. Plant J 46: 747-757.
29. Shah K, Russinova E, Gadella TWJ Jr, Willemse J, de Vries SC (2002) The Arabidopsis kinase-associated protein phosphatase controls internalization of the somatic embryogenesis receptor kinase 1. Genes Dev 16: 1707-1720.
30. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221-227.
31. Sugikawa Y, Ebihara S, Tsuda K, Niwa Y, Yamazaki K (2005) Transcriptional coactivator MBF1s from Arabidopsis predominantly localize in nucleolus. J Plant Res 118: 431-437.
32. Takemaru K, Harashima S, Ueda H, Hirose S (1998) Yeast coactivator MBF1 mediates GCN4-dependent transcriptional activation. Mol Cell Biol 18: 4971-4976.
33. Tani T, Sobajima H, Okada K, Chujo T, Arimura S, Tsutsumi N, Nishimura M, Seto H, Nojiri H, Yamane H (2008) Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice. Planta 227: 517-526.
34. Tsuda K, Yamazaki K (2004) Structure and expression analysis of three subtypes of Arabidopsis MBF1 genes. Biochim Biophys Acta 1680: 1-10.
35. Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D (2002) Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell 14: 903-916.
36. Vermeer JE, Thole JM, Goedhart J, Nielsen E, Munnik T, Gadella TW Jr (2009) Imaging phosphatidylinositol 4-phosphate dynamics in living plant cells. Plant J 57: 356-372.
37. Vlieghe K, Boudolf V, Beemster GT, Maes S, Magyar Z, Atanassova A, de Almeida Engler J, De Groodt R, Inzé DD, Veylder L (2005) The DP-E2F-like gene DEL1 controls the endocycle in Arabidopsis thaliana. Curr Biol 15: 59-63.
38. von Koskull-Döring P, Scharf KD, Nover L (2007) The diversity of plant heat stress transcription factors. Trends Plant Sci 12: 452-457.
39. 2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell 16: 1466-1477.
40. Zhu Y, Li Z, Xu B, Li H, Wang L, Dong A, Huang H (2008) Subcellular localizations of AS1 and AS2 suggest their common and distinct roles in plant development. J Integr Plant Biol 50: 897-905.