Characterisation of bacteria in ascites-reporting the potential of culture-independent, molecular analysis

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 29, Issue 5, 2010, Pages 533-541

  Rogers, G B ^a   Russell, L E ^a   Preston, P G ^b   Marsh, P ^b   Collins, J E ^c   Saunders, J ^c   Sutton, J ^b   Fine, D ^b   Bruce, K D ^a   Wright, M ^b  

^a KING'S COLLEGE LONDON   (United Kingdom)

^b SOUTHAMPTON GENERAL HOSPITAL   (United Kingdom)

^c UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ADULT; AGED; ARTICLE; ASCITES; ASCITES FLUID ANALYSIS; BACTERIAL COUNT; BACTERIUM CULTURE; BACTERIUM DETECTION; CONTROLLED STUDY; FEASIBILITY STUDY; FEMALE; GENETIC ANALYSIS; HUMAN; LIVER CIRRHOSIS; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACENTESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RNA SEQUENCE; SEQUENCE ANALYSIS;

ADULT; AGED; ASCITES; BACTERIA; BACTERIAL TYPING TECHNIQUES; CULTURE TECHNIQUES; DNA, BACTERIAL; FEMALE; HUMANS; LIVER CIRRHOSIS; MALE; MIDDLE AGED; MOLECULAR DIAGNOSTIC TECHNIQUES; PARACENTESIS; PERITONITIS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S;

EID: 77952073631     PISSN: 09349723     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10096-010-0891-5     Document Type: Article

References (31)

1. P Sort M Navasa V Arroyo X Aldeguer R Planas L Ruiz-del-Arbol L Castells V Vargas G Soriano M Guevara P Ginès J Rodés 1999 Effect of intravenous albumin on renal impairment and mortality in patients with cirrhosis and spontaneous bacterial peritonitis N Engl J Med 341 403 409 10.1056/NEJM199908053410603 1:CAS:528:DyaK1MXltlyltb8%3D 10432325 (Pubitemid 29362513)
2. C Guarner R Solà G Soriano M Andreu MT Novella MC Vila M Sàbat S Coll J Ortiz C Gómez J Balanzó 1999 Risk of a first community-acquired spontaneous bacterial peritonitis in cirrhotics with low ascitic fluid protein levels Gastroenterology 117 414 419 10.1053/gast.1999. 0029900414 1:STN:280:DyaK1MzltVejtg%3D%3D 10419924 (Pubitemid 29352951)
3. PJ Thuluvath S Morss R Thompson 2001 Spontaneous bacterial peritonitis-in-hospital mortality, predictors of survival, and health care costs from 1988 to 1998 Am J Gastroenterol 96 1232 1236 1:STN:280: DC%2BD3MzntVWmuw%3D%3D 11316175
4. JM Llovet E Moitinho M Sala R Bataller P Rodríguez-Iglesias A Castells J Fernández R Planas M Navasa J Bruix J Rodés 2000 Prevalence and prognostic value of hepatocellular carcinoma in cirrhotic patients presenting with spontaneous bacterial peritonitis J Hepatol 33 423 429 10.1016/S0168-8278(00)80278-0 1:STN:280:DC%2BD3cvmsVyhtw%3D%3D 11019998 (Pubitemid 30663380)
5. YH Park HC Lee HG Song S Jung SH Ryu JW Shin YH Chung YS Lee DJ Suh 2003 Recent increase in antibiotic-resistant microorganisms in patients with spontaneous bacterial peritonitis adversely affects the clinical outcome in Korea J Gastroenterol Hepatol 18 927 933 10.1046/j.1440-1746.2003.03086.x 12859722 (Pubitemid 37056172)
6. HS Cheong CI Kang JA Lee SY Moon MK Joung DR Chung KC Koh NY Lee JH Song KR Peck 2009 Clinical significance and outcome of nosocomial acquisition of spontaneous bacterial peritonitis in patients with liver cirrhosis Clin Infect Dis 48 1230 1236 10.1086/597585 19302016
7. BA Runyon 2003 The evolution of ascitic fluid analysis in the diagnosis of spontaneous bacterial peritonitis Am J Gastroenterol 98 1675 1677 10.1111/j.1572-0241.2003.07600.x 12907318
8. A Koulaouzidis S Bhat A Karagiannidis WC Tan BD Linaker 2007 Spontaneous bacterial peritonitis Postgrad Med J 83 379 383 10.1136/pgmj.2006.056168 1:STN:280:DC%2BD2szjvVKhsw%3D%3D 17551068 (Pubitemid 46960823)
9. G García-Tsao 1992 Spontaneous bacterial peritonitis Gastroenterol Clin North Am 21 257 275 1568776
10. V Arroyo W Jiménez 2000 Complications of cirrhosis. II. Renal and circulatory dysfunction. Lights and shadows in an important clinical problem J Hepatol 32 157 170 10.1016/S0168-8278(00)80423-7 1:STN:280: DC%2BD3c7ptFWntA%3D%3D 10728802
11. BA Runyon AASLD AASLD Practice Guidelines Committee 2009 Management of adult patients with ascites due to cirrhosis: An update Hepatology 49 2087 2107 10.1002/hep.22853 19475696
12. A Rimola G García-Tsao M Navasa LJ Piddock R Planas B Bernard JM Inadomi 2000 Diagnosis, treatment and prophylaxis of spontaneous bacterial peritonitis: A consensus document. International Ascites Club J Hepatol 32 142 153 10.1016/S0168-8278(00)80201-9 1:STN:280:DC%2BD3c7jsFKgtg%3D%3D 10673079
13. BA Runyon JC Hoefs 1984 Culture-negative neutrocytic ascites: A variant of spontaneous bacterial peritonitis Hepatology 4 1209 1211 10.1002/hep. 1840040619 1:STN:280:DyaL2M%2FltlSisA%3D%3D 6500513
14. R Terg D Levi P Lopez C Rafaelli S Rojter R Abecasis F Villamil H Aziz A Podesta 1992 Analysis of clinical course and prognosis of culture-positive spontaneous bacterial peritonitis and neutrocytic ascites. Evidence of the same disease Dig Dis Sci. 37 1499 1504 10.1007/BF01296493 1:STN:280: DyaK3s%2FhtVWrtg%3D%3D 1395994
15. G Pelletier D Salmon O Ink S Hannoun P Attali C Buffet JP Etienne 1990 Culture-negative neutrocytic ascites: A less severe variant of spontaneous bacterial peritonitis J Hepatol 10 327 331 10.1016/0168-8278(90)90140-M 1:STN:280:DyaK3czgvVansg%3D%3D 2365982 (Pubitemid 20162740)
16. GB Rogers MP Carroll KD Bruce 2009 Studying bacterial infections through culture-independent approaches J Med Microbiol 58 1401 1418 10.1099/jmm.0. 013334-0 1:CAS:528:DC%2BD1MXhsVyitL%2FL 19556372
17. GB Rogers TWV Daniels A Tuck MP Carroll GJ Connett GJ David KD Bruce 2009 Studying bacteria in respiratory specimens by using conventional and molecular microbiological approaches BMC Pulm Med 9 14 10.1186/1471-2466-9-14 19368727
18. KA Harris JC Hartley 2003 Development of broad-range 16S rDNA PCR for use in the routine diagnostic clinical microbiology service J Med Microbiol 52 685 691 10.1099/jmm.0.05213-0 1:CAS:528:DC%2BD3sXntlKht7o%3D 12867563 (Pubitemid 36981477)
19. AC Whelen DH Persing 1996 The role of nucleic acid amplification and detection in the clinical microbiology laboratory Annu Rev Microbiol 50 349 373 10.1146/annurev.micro.50.1.349 1:CAS:528:DyaK28XmtFGhsbk%3D 8905084 (Pubitemid 26337467)
20. MJ Espy JR Uhl LM Sloan SP Buckwalter MF Jones EA Vetter JD Yao NL Wengenack JE Rosenblatt FR Cockerill 3rd TF Smith 2006 Real-time PCR in clinical microbiology: Applications for routine laboratory testing Clin Microbiol Rev 19 165 256 10.1128/CMR.19.1.165-256.2006 1:CAS:528:DC%2BD28XhsFGjur4%3D 16418529 (Pubitemid 43158452)
21. GB Rogers MP Carroll DJ Serisier PM Hockey G Jones KD Bruce 2004 Characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16s ribosomal DNA terminal restriction fragment length polymorphism profiling J Clin Microbiol 42 5176 5183 10.1128/JCM.42.11.5176- 5183.2004 1:CAS:528:DC%2BD2cXhtFahtL7L 15528712 (Pubitemid 39506227)
22. MA Nadkarni FE Martin NA Jacques N Hunter 2002 Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set Microbiology 148 257 266 1:CAS:528:DC%2BD38XhvVemtrw%3D 11782518
23. J Such R Francés C Muñoz P Zapater JA Casellas A Cifuentes F Rodríguez-Valera S Pascual J Sola-Vera F Carnicer F Uceda JM Palazón M Pérez-Mateo 2002 Detection and identification of bacterial DNA in patients with cirrhosis and culture-negative, nonneutrocytic ascites Hepatology 36 135 141 10.1053/jhep.2002.33715 1:CAS:528: DC%2BD38Xlslyru7g%3D 12085357 (Pubitemid 34700770)
24. R Francés S Benlloch P Zapater JM González B Lozano C Muñoz S Pascual JA Casellas F Uceda JM Palazón F Carnicer M Pérez-Mateo J Such 2004 A sequential study of serum bacterial DNA in patients with advanced cirrhosis and ascites Hepatology 39 484 491 10.1002/hep.20055 14768002 (Pubitemid 38222190)
25. MM El-Naggar ESAM Khalil MAM El-Daker MF Salama 2008 Bacterial DNA and its consequences in patients with cirrhosis and culture-negative, non-neutrocytic ascites J Med Microbiol 57 1533 1538 10.1099/jmm.0.2008/001867-0 1:CAS:528:DC%2BD1MXhtVWqsrs%3D 19018026
26. JE Christensen CE Reynolds SK Shukla KD Reed 2004 Rapid molecular diagnosis of lactobacillus bacteremia by terminal restriction fragment length polymorphism analysis of the 16S rRNA gene Clin Med Res 2 37 45 10.3121/cmr.2.1.37 1:CAS:528:DC%2BD2cXjsFenu78%3D 15931333
27. J Dicksved M Lindberg M Rosenquist H Enroth JK Jansson L Engstrand 2009 Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls J Med Microbiol 58 509 516 10.1099/jmm.0.007302-0 1:CAS:528:DC%2BD1MXltVWks7Y%3D 19273648
28. US Justesen HM Holt HC Thiesson J Blom XC Nielsen R Dargis M Kemp JJ Christensen 2007 Report of the first human case of Caulobacter sp. infection J Clin Microbiol 45 1366 1369 10.1128/JCM.02380-06 17267638 (Pubitemid 46626520)
29. BA Runyon 1990 Monomicrobial nonneutrocytic bacterascites: A variant of spontaneous bacterial peritonitis Hepatology 12 710 715 10.1002/hep.1840120415 1:STN:280:DyaK3M%2FgslKrtA%3D%3D 2210672
30. A Rimola JM Salmerón G Clemente L Rodrigo A Obrador ML Miranda C Guarner R Planas R Solá V Vargas 1995 Two different dosages of cefotaxime in the treatment of spontaneous bacterial peritonitis in cirrhosis: results of a prospective, randomized, multicenter study Hepatology 21 674 679 10.1002/hep.1840210312 1:STN:280:DyaK2M7otVyhtA%3D%3D 7875666
31. C Toledo JM Salmerón A Rimola M Navasa V Arroyo J Llach A Ginès P Ginès J Rodés 1993 Spontaneous bacterial peritonitis in cirrhosis: Predictive factors of infection resolution and survival in patients treated with cefotaxime Hepatology 17 251 257 10.1002/hep.1840170215 1:STN:280:DyaK3s7lsVKksQ%3D%3D 8428722