-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 : 3389 3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
62449127686
-
Dynamics of heat-induced thermal stress resistance and Hsp70 expression in the springtail, Orchesella cincta
-
Bahrndorff, S., Marien, J., Loeschcke, V. Ellers, J. (2009) Dynamics of heat-induced thermal stress resistance and Hsp70 expression in the springtail, Orchesella cincta. Funct Ecol 23 : 233 239.
-
(2009)
Funct Ecol
, vol.23
, pp. 233-239
-
-
Bahrndorff, S.1
Marien, J.2
Loeschcke, V.3
Ellers, J.4
-
3
-
-
0001677717
-
Controlling the false discovery rate - A practical and powerful approach to multiple testing
-
Benjamini, Y. Hochberg, Y. (1995) Controlling the false discovery rate - a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57 : 289 300.
-
(1995)
J R Stat Soc ser B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
4
-
-
67650917116
-
Reference genes for QRT-PCR tested under various stress conditions in Folsomia candida and Orchesella cincta (Insecta, Collembola)
-
de Boer, M., de Boer, T., Marien, J., Timmermans, M., Nota, B., Van Straalen, N. et al. (2009) Reference genes for QRT-PCR tested under various stress conditions in Folsomia candida and Orchesella cincta (Insecta, Collembola). BMC Mol Biol 10 : 54.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 54
-
-
De Boer, M.1
De Boer, T.2
Marien, J.3
Timmermans, M.4
Nota, B.5
Van Straalen, N.6
-
5
-
-
33747045180
-
The cellular response to heat stress in the goby Gillichthys mirabilis: A cDNA microarray and protein-level analysis
-
Buckley, B.A., Gracey, A.Y. Somero, G.N. (2006) The cellular response to heat stress in the goby Gillichthys mirabilis: a cDNA microarray and protein-level analysis. J Exp Biol 209 : 2660 2677.
-
(2006)
J Exp Biol
, vol.209
, pp. 2660-2677
-
-
Buckley, B.A.1
Gracey, A.Y.2
Somero, G.N.3
-
6
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton, H.C., Ren, B., Koh, S.S., Harbison, C.T., Kanin, E., Jennings, E.G. et al. (2001) Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 12 : 323 337. (Pubitemid 33051578)
-
(2001)
Molecular Biology of the Cell
, vol.12
, Issue.2
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Sang Seok Koh3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Tong Ihn Lee7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
7
-
-
68849101653
-
Surviving the cold: Molecular analyses of insect cryoprotective dehydration in the Arctic springtail Megaphorura arctica (Tullberg)
-
Clark, M., Thorne, M., Purac, J., Burns, G., Hillyard, G., Popovic, Z. et al. (2009) Surviving the cold: molecular analyses of insect cryoprotective dehydration in the Arctic springtail Megaphorura arctica (Tullberg). BMC Genomics 10 : 328.
-
(2009)
BMC Genomics
, vol.10
, pp. 328
-
-
Clark, M.1
Thorne, M.2
Purac, J.3
Burns, G.4
Hillyard, G.5
Popovic, Z.6
-
8
-
-
50049109156
-
Differential gene expression during thermal stress and bleaching in the Caribbean coral Montastraea faveolata
-
Desalvo, M.K., Voolstra, C.R., Sunagawa, S., Schwarz, J.A., Stillman, J.H., Coffroth, M.A. et al. (2008) Differential gene expression during thermal stress and bleaching in the Caribbean coral Montastraea faveolata. Mol Ecol 17 : 3952 3971.
-
(2008)
Mol Ecol
, vol.17
, pp. 3952-3971
-
-
Desalvo, M.K.1
Voolstra, C.R.2
Sunagawa, S.3
Schwarz, J.A.4
Stillman, J.H.5
Coffroth, M.A.6
-
9
-
-
0037620675
-
Non-linear normalization and background correction in one-channel cDNA microarray studies
-
DOI 10.1093/bioinformatics/btg083
-
Edwards, D. (2003) Non-linear normalization and background correction in one-channel cDNA microarray studies. Bioinformatics 19 : 825 833. (Pubitemid 36582398)
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 825-833
-
-
Edwards, D.1
-
10
-
-
0033057848
-
Heat-shock proteins, molecular chaperones, and the stress response: Evolutionary and ecological physiology
-
Feder, M.E. Hofmann, G.E. (1999) Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. Annu Rev Physiol 61 : 243 282.
-
(1999)
Annu Rev Physiol
, vol.61
, pp. 243-282
-
-
Feder, M.E.1
Hofmann, G.E.2
-
11
-
-
12844277594
-
Folsomia candida (Collembola): A 'standard' soil arthropod
-
Fountain, M.T. Hopkin, S.P. (2005) Folsomia candida (Collembola): a 'standard' soil arthropod. Annu Rev Entomol 50 : 201 222.
-
(2005)
Annu Rev Entomol
, vol.50
, pp. 201-222
-
-
Fountain, M.T.1
Hopkin, S.P.2
-
12
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch, A.P., Spellman, P.T., Kao, C.M., Carmel-Harel, O., Eisen, M.B., Storz, G. et al. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11 : 4241 4257.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
-
13
-
-
0036602618
-
Quality control for USDA NRCS SM-ST network soil temperatures: A method and a dataset
-
Hu, Q., Feng, S. Schaefer, G. (2002) Quality control for USDA NRCS SM-ST network soil temperatures: a method and a dataset. J Appl Meteorol 41 : 607 619. (Pubitemid 34657966)
-
(2002)
Journal of Applied Meteorology
, vol.41
, Issue.6
, pp. 607-619
-
-
Hu, Q.1
Feng, S.2
Schaefer, G.3
-
14
-
-
0035733752
-
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
-
DOI 10.1038/ng766
-
Jin, W., Riley, R.M., Wolfinger, R.D., White, K.P., Passador-Gurgel, G. Gibson, G. (2001) The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet 29 : 389 395. (Pubitemid 34326688)
-
(2001)
Nature Genetics
, vol.29
, Issue.4
, pp. 389-395
-
-
Jin, W.1
Riley, R.M.2
Wolfinger, R.D.3
White, K.P.4
Passador-Gurgell, G.5
Gibson, G.6
-
15
-
-
33947520506
-
Inhibition of hypoxia-inducible factor (HIF) hydroxylases by citric acid cycle intermediates: Possible links between cell metabolism and stabilization of HIF
-
DOI 10.1074/jbc.M610415200
-
Koivunen, P., Hirsila, M., Remes, A.M., Hassinen, I.E., Kivirikko, K.I. Myllyharju, J. (2007) Inhibition of hypoxia-inducible factor (HIF) hydroxylases by citric acid cycle intermediates - possible links between cell metabolism and stabilization of HIF. J Biol Chem 282 : 4524 4532. (Pubitemid 47100953)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.7
, pp. 4524-4532
-
-
Koivunen, P.1
Hirsila, M.2
Remes, A.M.3
Hassinen, I.E.4
Kivirikko, K.I.5
Myllyharju, J.6
-
16
-
-
0023236959
-
Catalysis of protein folding by prolyl isomerase
-
DOI 10.1038/329268a0
-
Lang, K., Schmid, F.X. Fischer, G. (1987) Catalysis of protein folding by proline isomerase. Nature 368 : 1070 1071. (Pubitemid 17128975)
-
(1987)
Nature
, vol.329
, Issue.6136
, pp. 268-270
-
-
Lang, K.1
Schmid, F.X.2
Fischer, G.3
-
17
-
-
0022555843
-
The heat-shock response
-
Lindquist, S. (1986) The Heat-Shock Response. Annu Rev Biochem 55 : 1151 1191. (Pubitemid 16070798)
-
(1986)
Annual Review of Biochemistry
, vol.VOL. 55
, pp. 1151-1191
-
-
Lindquist, S.1
-
18
-
-
0036281211
-
Processing of gene expression data generated by quantitative real-time RT-PCR
-
Muller, P.Y., Janovjak, H., Miserez, A.R. Dobbie, Z. (2002) Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques 32 : 1372 1379. (Pubitemid 34619770)
-
(2002)
BioTechniques
, vol.32
, Issue.6
, pp. 1372-1379
-
-
Muller, P.Y.1
Janovjak, H.2
Miserez, A.R.3
Dobbie, Z.4
-
19
-
-
55349090260
-
Gene expression analysis of collembola in cadmium containing soil
-
Nota, B., Timmermans, M.J.T.N., Franken, O., Montagne-Wajer, K., Mariën, J., Boer, M.E.D. et al. (2008) Gene expression analysis of collembola in cadmium containing soil. Environ Sci Technol 42 : 8152 8157.
-
(2008)
Environ Sci Technol
, vol.42
, pp. 8152-8157
-
-
Nota, B.1
Timmermans, M.J.T.N.2
Franken, O.3
Montagne-Wajer, K.4
Mariën, J.5
Boer, M.E.D.6
-
20
-
-
66349098339
-
Transcriptomics reveals extensive inducible biotransformation in the soil-dwelling invertebrate Folsomia candida exposed to phenanthrene
-
Nota, B., Bosse, M., Ylstra, B., Van Straalen, N. Roelofs, D. (2009) Transcriptomics reveals extensive inducible biotransformation in the soil-dwelling invertebrate Folsomia candida exposed to phenanthrene. BMC Genomics 10 : 236.
-
(2009)
BMC Genomics
, vol.10
, pp. 236
-
-
Nota, B.1
Bosse, M.2
Ylstra, B.3
Van Straalen, N.4
Roelofs, D.5
-
21
-
-
2542579359
-
Getting into position: The catalytic mechanisms of protein of protein ubiquitylation
-
DOI 10.1042/BJ20040198
-
Passmore, L.A. Barford, D. (2004) Getting into position: the catalytic mechanisms of protein ubiquitylation. Biochem J 379 : 513 525. (Pubitemid 38703635)
-
(2004)
Biochemical Journal
, vol.379
, Issue.3
, pp. 513-525
-
-
Passmore, L.A.1
Barford, D.2
-
22
-
-
0033214149
-
Genome-wide expression profiling in Escherichia coli K-12
-
DOI 10.1093/nar/27.19.3821
-
Richmond, C.S., Glasner, J.D., Mau, R., Jin, H.F. Blattner, F.R. (1999) Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res 27 : 3821 3835. (Pubitemid 29454430)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.19
, pp. 3821-3835
-
-
Richmond, C.S.1
Glasner, J.D.2
Mau, R.3
Jin, H.4
Blattner, F.R.5
-
23
-
-
0031193464
-
Effects of temperature on the relative toxicities of Cd, Cu, Pb, and Zn to Folsomia candida (Collembola)
-
Sandifer, R.D. Hopkin, S.P. (1997) Effects of temperature on the relative toxicities of Cd, Cu, Pb, and Zn to Folsomia candida (Collembola). Ecotoxicol Environ Saf 37 : 125 130.
-
(1997)
Ecotoxicol Environ Saf
, vol.37
, pp. 125-130
-
-
Sandifer, R.D.1
Hopkin, S.P.2
-
24
-
-
0032213339
-
Thermotolerance in Saccharomyces cerevisiae: The Yin and Yang of trehalose
-
DOI 10.1016/S0167-7799(98)01251-7, PII S0167779998012517
-
Singer, M.A. Lindquist, S. (1998) Thermotolerance in Saccharomyces cerevisiae: the Yin and Yang of trehalose. Trends Biotechnol 16 : 460 468. (Pubitemid 28532702)
-
(1998)
Trends in Biotechnology
, vol.16
, Issue.11
, pp. 460-468
-
-
Singer, M.A.1
Lindquist, S.2
-
25
-
-
67349164314
-
Exposure to mercury reduces heat tolerance and heat hardening ability of the springtail Folsomia candida
-
Slotsbo, S., Heckmann, L.-H., Damgaard, C., Roelofs, D., de Boer, T. Holmstrup, M. (2009) Exposure to mercury reduces heat tolerance and heat hardening ability of the springtail Folsomia candida. Comp Biochem Physiol C Toxicol Pharmacol 150 : 118 123.
-
(2009)
Comp Biochem Physiol C Toxicol Pharmacol
, vol.150
, pp. 118-123
-
-
Slotsbo, S.1
Heckmann, L.-H.2
Damgaard, C.3
Roelofs, D.4
De Boer, T.5
Holmstrup, M.6
-
26
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
no. 1, article 3.
-
Smyth, G.K. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: no. 1, article 3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
27
-
-
33644872577
-
Limma: Linear models for microarray data
-
Gentleman, R. Carey, V. Dudoit, S. Irizarry, R. Huber, W. eds), Springer
-
Smyth, G.K. (2005) Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Gentleman, R., Carey, V., Dudoit, S., Irizarry, R. Huber, W., eds), pp. 397 420. Springer
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
28
-
-
18744369640
-
Use of within-array replicate spots for assessing differential expression in microarray experiments
-
DOI 10.1093/bioinformatics/bti270
-
Smyth, G.K., Michaud, J. Scott, H.S. (2005) Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21 : 2067 2075. (Pubitemid 40668046)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2067-2075
-
-
Smyth, G.K.1
Michaud, J.2
Scott, H.S.3
-
29
-
-
0242574386
-
The evolutionary and ecological role of heat shock proteins
-
DOI 10.1046/j.1461-0248.2003.00528.x
-
Sørensen, J.G., Kristensen, T.N. Loeschcke, V. (2003) The evolutionary and ecological role of heat shock proteins. Ecol Lett 6 : 1025 1037. (Pubitemid 37365491)
-
(2003)
Ecology Letters
, vol.6
, Issue.11
, pp. 1025-1037
-
-
Sorensen, J.G.1
Kristensen, T.N.2
Loeschcke, V.3
-
30
-
-
29144438879
-
Full genome gene expression analysis of the heat stress response in Drosophila melanogaster
-
DOI 10.1379/CSC-128R1.1
-
Sørensen, J.G., Nielsen, M.M., Kruhoffer, M., Justesen, J. Loeschcke, V. (2005) Full genome gene expression analysis of the heat stress response, in Drosophila melanogaster. Cell Stress Chaperones 10 : 312 328. (Pubitemid 41813379)
-
(2005)
Cell Stress and Chaperones
, vol.10
, Issue.4
, pp. 312-328
-
-
Sorensen, J.G.1
Nielsen, M.M.2
Kruhoffer, M.3
Justesen, J.4
Loeschcke, V.5
-
31
-
-
54349095175
-
Genes and environment - Striking the fine balance between sophisticated biomonitoring and true functional environmental genomics
-
Steinberg, C.E.W., Sturzenbaum, S.R. Menzel, R. (2008) Genes and environment - striking the fine balance between sophisticated biomonitoring and true functional environmental genomics. Sci Total Environ 400 : 142 161.
-
(2008)
Sci Total Environ
, vol.400
, pp. 142-161
-
-
Steinberg, C.E.W.1
Sturzenbaum, S.R.2
Menzel, R.3
-
32
-
-
20444415235
-
Complex cellular responses to reactive oxygen species
-
DOI 10.1016/j.tcb.2005.04.003, PII S0962892405001029
-
Temple, M.D., Perrone, G.G. Dawes, I.W. (2005) Complex cellular responses to reactive oxygen species. Trends Cell Biol 15 : 319 326. (Pubitemid 40805328)
-
(2005)
Trends in Cell Biology
, vol.15
, Issue.6
, pp. 319-326
-
-
Temple, M.D.1
Perrone, G.G.2
Dawes, I.W.3
-
33
-
-
70449476605
-
Sugar sweet springtails: On the transcriptional response of Folsomia candida (Collembola) to desiccation stress
-
Timmermans, M.J.T.N., Roelofs, D., Nota, B., Ylstra, B. Holmstrup, M. (2009) Sugar sweet springtails: on the transcriptional response of Folsomia candida (Collembola) to desiccation stress. Insect Mol Biol 18 : 737 746.
-
(2009)
Insect Mol Biol
, vol.18
, pp. 737-746
-
-
Timmermans, M.J.T.N.1
Roelofs, D.2
Nota, B.3
Ylstra, B.4
Holmstrup, M.5
-
34
-
-
0043128522
-
HIF-1 is required for heat acclimation in the nematode Caenorhabditis elegans
-
Treinin, M., Shliar, J., Jiang, H.Q., Powell-Coffman, J.A., Bromberg, Z. Horowitz, M. (2003) HIF-1 is required for heat acclimation in the nematode Caenorhabditis elegans. Physiol Genomics 14 : 17 24. (Pubitemid 37345211)
-
(2003)
Physiological Genomics
, vol.14
, pp. 17-24
-
-
Treinin, M.1
Shliar, J.2
Jiang, H.3
Powell-Coffman, J.A.4
Bromberg, Z.5
Horowitz, M.6
-
35
-
-
0033520987
-
Posttranslational quality control: Folding, refolding, and degrading proteins
-
Wickner, S., Maurizi, M.R. Gottesman, S. (1999) Posttranslational quality control: folding, refolding, and degrading proteins. Science 286 : 1888 1893. (Pubitemid 129515889)
-
(1999)
Science
, vol.286
, Issue.5446
, pp. 1888-1893
-
-
Wickner, S.1
Maurizi, M.R.2
Gottesman, S.3
-
36
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J. et al. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30 : E15.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 15
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
-
37
-
-
0034800374
-
InterProScan - An integration platform for the signature-recognition methods in InterPro
-
Zdobnov, E.M. Apweiler, R. (2001) InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17 : 847 848. (Pubitemid 32970486)
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
|