Haloalkaliphilic spore-forming sulfidogens from soda lake sediments and description of Desulfitispora alkaliphila gen. nov., sp. nov.

Extremophiles

Volumn 14, Issue 3, 2010, Pages 313-320

  Sorokin, Dimitry Y ^a,b   Muyzer, Gerard ^b  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

Clostridia; Haloalkaliphilic; Soda lakes; Sulfidogenic; Sulfite; Thiosulfate

Indexed keywords

PYRUVIC ACID; RNA 16S; SULFATE; SULFIDE; SULFITE; SULFUR;

ANAEROBIC GROWTH; ARTICLE; BACTERIAL SPORE; CHEMISTRY; CLOSTRIDIUM; DOSE RESPONSE; ELECTRON; ELECTRON MICROSCOPY; GENETICS; METABOLISM; METHODOLOGY; PH; PHASE CONTRAST MICROSCOPY; PHYLOGENY; PHYSIOLOGY;

ANAEROBIOSIS; CLOSTRIDIUM; DOSE-RESPONSE RELATIONSHIP, DRUG; ELECTRONS; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON; MICROSCOPY, PHASE-CONTRAST; PHYLOGENY; PYRUVIC ACID; RNA, RIBOSOMAL, 16S; SPORES; SULFATES; SULFIDES; SULFITES; SULFUR;

BACTERIA (MICROORGANISMS); CLOSTRIDIA; CLOSTRIDIALES; CLOSTRIDIUM; NATRONINCOLA;

EID: 77951766131     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-010-0310-y     Document Type: Article

References (30)

1. Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl Acids Res 7: 1513-1523.
2. Christiansen N, Ahring BK (1996) Desulfitobacterium hafniense sp. nov., an anaerobic, reductively dechlorinating bacterium. Int J Syst Bacteriol 46: 442-448.
3. Foti M, Sorokin DY, Lomans B, Mussman M, Zakharova EE, Pimenov NV, Kuenen JG, Muyzer G (2007) Diversity, activity and abundance of sulfate-reducing bacteria in saline and hypersaline soda lakes. Appl Environ Microbiol 73: 2093-2100.
4. Gorlenko VM, Namsaraev BB, Kulyrova AV, Zavarzina DG, Zhilina TN (1999) Activity of sulfate-reducing bacteria in the sediments of the soda lakes in south-east Transbaikal area. Microbiology (Moscow, English Translation) 68: 580-586.
5. Kostka J, Nealson KH (1998) Isolation, cultivation and characterization of iron- and manganese-reducing bacteria. In: Burlage RS et al (eds) Techniques in microbial ecology. Oxford University Press, USA, p 63.
6. Kulp TR, Hoeft SE, Miller LG, Saltikov C, Murphy JN, Han S, Lanoil B, Oremland RS (2006) Dissimilatory arsenate and sulfate reduction in sediments of two hypersaline, arsenic-rich soda lakes: Mono and Searles Lakes, California. Appl Environ Microbiol 72: 6514-6526.
7. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with Folin phenol reagent. J Biol Chem 193: 265-275.
8. Marmur J (1961) A procedure for isolation of DNA from microorganisms. J Mol Biol 3: 208-214.
9. Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from microorganisms. J Mol Biol 5: 109-118.
10. Mesbah NM, Abou-El-Ela SH, Wiegel J (2007) Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi an Natrun, Egypt. Microbial Ecol 54: 598-616.
11. Nielsen MB, Kjeldsen KU, Ingvorsen K (2006) Desulfitibacter alkalitolerans gen. nov., sp. nov., an anaerobic, alkalitolerant, sulfite-reducing bacterium isolated from a district heating plant. Int J Syst Evol Microbiol 56: 2831-2836.
12. 12-Bedürfnis phototropher Schwefelbakterien. Arch Microbiol 55: 245-256.
13. Pikuta EV, Zhilina TN, Zavarzin GA, Kostrikina NA, Osipov GA, Rainey FA (1998) Desulfonatronum lacustre gen. nov., sp. nov.: a new alkaliphilic sulfate-reducing bacterium utilizing ethanol. Microbiology (Moscow, English translation) 67: 105-113.
14. Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Cleland D, Krader P (2003) Desulfonatronum thiodismutans sp. nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth. Int J Syst Evol Microbiol 53: 1327-1332.
15. Pikuta EV, Itoh T, Krader P, Tang J, Whitman W, Hoover RB (2006) Anaerovirgula multivorans gen. nov., sp. nov., a novel spore-forming, alkaliphilic anaerobe isolated from Owens Lake, California, USA. Int J Syst Evol Microbiol 56: 2623-2629.
16. Plugge CM (2005) Anoxic media design, preparation, and considerations. Methods Enzymol 397: 3-16.
17. Schäfer H, Muyzer G (2001) Denaturing gradient gel electrophoresis in marine microbial ecology. In: Paul JH (ed) Methods in microbiology. Academic, New York.
18. Scholten JCM, Joye SB, Hollibaugh JT, Murrell JC (2005) Molecular analysis of the sulfate reducing and archaeal community in a meromictic soda lake (Mono Lake, California) by targeting 16S rRNA, mcrA, apsA, and dsrAB genes. Microb Ecol 50: 29-39.
19. Sorokin DY, Gorlenko VM, Namsaraev BB, Namsaraev ZB, Lysenko AM, Eshinimaev BT, Khmelenina VN, Trotsenko YA, Kuenen JG (2004) Prokaryotic communities of the north-eastern Mongolian soda lakes. Hydrobiologia 522: 235-248.
20. Sorokin DY, Banciu H, Robertson LA, Kuenen JG (2006) Haloalkaliphilic sulfur-oxidizing bacteria. In: Dworkin M et al (eds) The Prokaryotes, V 2. Springer, New York, pp 969-984.
21. Sorokin DY, Foti M, Tindall BJ, Muyzer G (2007) Desulfurispirillum alkaliphilum gen. nov. sp. nov., a novel obligately anaerobic sulfur- and dissimilatory nitrate-reducing bacterium from a full-scale sulfide-removing bioreactor. Extremophiles 11: 363-370.
22. Sorokin DY, Tourova TP, Henstra AM, Stams AJM, Galinski EA, Muyzer G (2008a) Sulfidogenesis at extremely haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp. nov., and Desulfonatronospira delicata sp. nov.-a novel lineage of Deltaproteobacteria from hypersaline soda lakes. Microbiology (UK) 154: 1444-1453.
23. Sorokin DY, Tourova TP, Mussmann M, Muyzer G (2008b) Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrioalkaliphilus gen. nov. sp. nov.-two novel representatives of reductive sulfur cycle from soda lakes. Extremophiles 12: 431-439.
24. Sorokin DY, Detkova EN, Muyzer G (2010) Propionate and butyrate dependent bacterial sulfate reduction at extremely haloalkaline conditions and description of Desulfobotulus alkaliphilus sp. nov. Extremophiles 14: 71-77.
25. Trüper HG, Schlegel HG (1964) Sulfur metabolism in Thiorhodaceae. 1. Quantitative measurements on growing cells of Chromatium okenii. Antonie van Leeuwenhoek 30: 225-238.
26. Wiegel J, Tanner R, Rainey FA (2006) An introduction to the family Clostridiaceae. In: Dworkin M et al (eds) Prokaryotes, V 4. Springer, NY, pp 654-678.
27. Zavarzin GA (Ed.) (2007). Alkaliphilic microbial communities. In: Transactions of the Winogradsky Institute of Microbiology, V XIV, Nauka, Moscow, 396 pp (in Russian).
28. Zhilina TN, Zavarzin GA, Rainey FA, Pikuta EN, Osipov GA, Kostrikina NA (1997) Desulfonatronovibrio hydrogenovorans gen. nov., sp. nov., an alkaliphilic, sulfate-reducing bacterium. Int J Syst Bacteriol 47: 144-149.
29. Zhilina TN, Zavarzina DG, Kuever J, Lysenko AM, Zavarzin GA (2005) Desulfonatronum cooperativum sp. nov., a novel hydrogenotrophic, alkaliphilic, sulfate-reducing bacterium, from a syntrophic culture growing on acetate. Int J Syst Evol Microbiol 55: 1001-1006.
30. Zhilina TN, Zavarzina DG, Osipov GA, Kostrikina NA, Tourova TP (2009) Natronincola ferrireducens sp. nov., and Natronincola peptidovorans sp. nov., new anaerobic alkaliphilic peptolytic iron-reducing bacteria isolated from soda lakes. Microbiology (Moscow, English Translation) 78: 455-467.