Analysis of ancient human genomes

BioEssays

Volumn 32, Issue 5, 2010, Pages 388-391

  Shapiro, Beth ^a   Hofreiter, Michael ^b  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

Greenland; Human ancient DNA; Next generation sequencing; Population affinities; Saqqaq

Indexed keywords

MITOCHONDRIAL DNA;

ANTIQUITY; COST BENEFIT ANALYSIS; GENE SEQUENCE; GREENLAND; HUMAN; HUMAN GENOME; PHENOTYPE; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM;

ARCHAEOLOGY; DNA, MITOCHONDRIAL; FOSSILS; GENOME, HUMAN; GREENLAND; HUMANS; SEQUENCE ANALYSIS, DNA;

EID: 77951722028     PISSN: 02659247     EISSN: 15211878     Source Type: Journal    
DOI: 10.1002/bies.201000026     Document Type: Review

References (32)

1. MarguliesM, EgholmM, AltmanWE, et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380
2. Poinar HN, Schwarz C, Qi J, et al. 2006. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311: 392-394 (Pubitemid 43132666)
3. Miller W, Drautz DI, Ratan A, et al. 2008. Sequencing the nuclear genome of the extinct woolly mammoth. Nature 456: 387-390
4. Pääbo S. 1985. Molecular cloning of ancient Egyptian mummy DNA. Nature 314: 644-645 (Pubitemid 15080846)
5. Adcock GJ, Dennis ES, Easteal S, et al. 2001. Mitochondrial DNA sequences in ancient Australians: implications for modern human origins. Proc Natl Acad Sci USA 98: 537-542 (Pubitemid 32105077)
6. Cooper A, Rambaut A, Macaulay V, et al. 2001. Human origins and ancient human DNA. Science 292: 1655-1656
7. Del Pozzo G, Guardiola J. 1989. Mummy DNA fragment identified. Nature 339: 431-432
8. Pääbo S, Poinar H, Serre D, et al. 2004. Genetic analyses from ancient DNA. Annu Rev Genet 38: 645-679
9. Green RE, Krause J, Ptak SE, et al. 2006. Analysis of one million base pairs of Neanderthal DNA. Nature 444: 330-336 (Pubitemid 44764103)
10. Noonan JP, Coop G, Kudaravalli S, et al. 2006. Sequencing and analysis of Neanderthal genomic DNA. Science 314: 1113-1118 (Pubitemid 44789035)
11. Wall JD, Kim SK. 2007. Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genet 3: 1862-1866 (Pubitemid 350072052)
12. Green RE, Briggs AW, Krause J, et al. 2009. The Neandertal genome and ancient DNA authenticity. EMBO J 28: 2494-2502
13. Rasmussen M, Li Y, Lindgreen S, et al. 2010. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463: 757-762
14. Gilbert MTP, Wilson AS, Bunce M, et al. 2004. Ancient mitochondrial DNA from hair. Curr Biol 14: R463-4.
15. Gilbert MT, Kivisild T, Gronnow B, et al. 2008. Paleo-Eskimo mtDNA genome revealsmatrilineal discontinuity inGreenland. Science 320: 1787-1789 (Pubitemid 351931295)
16. GilbertMT, Tomsho LP, Rendulic S, et al. 2007. Whole-genome shotgun sequencing ofmitochondria fromancient hair shafts. Science 317: 1927-1930 (Pubitemid 47509438)
17. Pennisi E. 2009. Neandertal genomics. Tales of a prehistoric human genome. Science 323: 866-871
18. Green RE, Malaspinas AS, Krause J, et al. 2008. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell 134: 416-426
19. Schuster SC, Miller W, Ratan A, et al. 2010. Complete Khoisan and Bantu genomes from southern Africa. Nature 463: 943-947
20. Tishkoff SA, Reed FA, Friedlaender FR, et al. 2009. The genetic structure and history of Africans and African Americans. Science 324: 1035-1044
21. Gonzalez S, Jimenez-Lopez JC, Hedges R, et al. 2003. Earliest humans in the Americas: new evidence from Mexico. J Hum Evol 44: 379-387
22. Bramanti B, Thomas MG, Haak W, et al. 2009. Genetic discontinuity between local hunter-gatherers and central Europe's first farmers. Science 326: 137-140
23. Haak W, Forster P, Bramanti B, et al. 2005. Ancient DNA from the first European farmers in 7500-year-old Neolithic sites. Science 310: 1016-1018 (Pubitemid 41611913)
24. Malmstrom H, Gilbert MT, Thomas MG, et al. 2009. Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians. Curr Biol 19: 1758-1762
25. Noonan JP, Hofreiter M, Smith D, et al. 2005. Genomic sequencing of Pleistocene cave bears. Science 309: 597-599
26. Dalton R. 2010. Palaeogenetics: Icy resolve. Nature 463: 724-725
27. Novembre J, Johnson T, Bryc K, et al. 2008. Genes mirror geography within Europe. Nature 456: 98-101.
28. Hodges E, Rooks M, Xuan Z, et al. 2009. Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing. Nat Protoc 4: 960-974
29. Hodges E, Xuan Z, Balija V, et al. 2007. Genome-wide in situ exon capture for selective resequencing. Nat Genet 39: 1522-1527 (Pubitemid 350191350)
30. Briggs AW, Good JM, Green RE, et al. 2009. Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science 325: 318-321
31. Krause J, BriggsAW, KircherM, et al. 2010. A completemtDNA genome of an early modern human from Kostenki, Russia. Curr Biol 20: 231-236
32. Higuchi R, Bowman B, Freiberger M, et al. 1984. DNA sequences from the quagga, an extinct member of the horse family. Nature 312: 282-284 (Pubitemid 15202007)