메뉴 건너뛰기




Volumn 19, Issue 3, 2010, Pages 277-291

Comparison of oil degrading microbial communities in sediments from the Persian Gulf and Caspian Sea

Author keywords

Alcanivorax; Alkane hydroxylase; Bioremediation; Hydrocarbonoclastic bacteria; Microbial community

Indexed keywords

ALCANIVORAX; ALKANE HYDROXYLASE; BACTERIAL DENSITY; CASPIAN SEA; CATABOLIC GENES; CONTAMINATED SEAWATER; CONTAMINATED SEDIMENT; DEHYDROGENASE ACTIVITY; ENZYMATIC ACTIVITIES; GLUCOSIDASE ACTIVITY; LIPASE ACTIVITY; METABOLIC ACTIVITY; MICROBIAL COMMUNITIES; MICROCOSM EXPERIMENTS; OIL CONTAMINATION; PCR ANALYSIS; PERSIAN GULF; PETROLEUM HYDROCARBONS; SPECIFIC PRIMERS; SUBSURFACE SEDIMENTS;

EID: 77951687671     PISSN: 15320383     EISSN: 15497887     Source Type: Journal    
DOI: 10.1080/15320381003695215     Document Type: Article
Times cited : (51)

References (31)
  • 2
    • 0031832685 scopus 로고    scopus 로고
    • Bioremediation of oil-contaminated soil: Microbiological methods for feasibility assessment and field evaluation
    • Balba, M.T., Al-Awadhi, N., and Al-Daher, R. 1998. Bioremediation of oil-contaminated soil: microbiological methods for feasibility assessment and field evaluation. J. Microbiol. Methods. 32, 155-164.
    • (1998) J. Microbiol. Methods , vol.32 , pp. 155-164
    • Balba, M.T.1    Al-Awadhi, N.2    Al-Daher, R.3
  • 3
    • 0025690515 scopus 로고
    • Sheen screen, a miniaturized Most-Probable-Number method for enumeration of oil-degrading microorganisms
    • Brown, E.J., and Braddock, J.F. 1990. Sheen screen, a miniaturized Most-Probable-Number method for enumeration of oil-degrading microorganisms. Appl. Environ. Microbiol. 56(12), 3895-3896.
    • (1990) Appl. Environ. Microbiol , vol.56 , Issue.12 , pp. 3895-3896
    • Brown, E.J.1    Braddock, J.F.2
  • 5
    • 33847637158 scopus 로고    scopus 로고
    • Predominant growth of Alcanivorax during experiments on oil spill bioremediation in mesocosms
    • Cappello, S., Denaro, R., Genovese, M., Giuliano, L., and Yakimov, M.M. 2006. Predominant growth of Alcanivorax during experiments on oil spill bioremediation in mesocosms. Microbiol. Res. 162,185-190.
    • (2006) Microbiol. Res , vol.162 , pp. 185-190
    • Cappello, S.1    Denaro, R.2    Genovese, M.3    Giuliano, L.4    Yakimov, M.M.5
  • 6
  • 7
    • 0033627383 scopus 로고    scopus 로고
    • Field observations on the variability of crude oil impact on indigenous hydrocarbon-degrading bacteria from sub-Antarctic intertidal sediments
    • Delille, D., and Delille, B. 2000. Field observations on the variability of crude oil impact on indigenous hydrocarbon-degrading bacteria from sub-Antarctic intertidal sediments. Marine. Environ. Res. 49,403-417.
    • (2000) Marine. Environ. Res , vol.49 , pp. 403-417
    • Delille, D.1    Delille, B.2
  • 8
    • 0028797101 scopus 로고
    • Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon degrading bacterium from marine sediments
    • Dyksterhouse, S.E., Gray, J.P., Herwig, R.P., Lara, J.C., and Staley, J.T. 1995. Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon degrading bacterium from marine sediments. Int. J. Syst. Bacteriol. 45, 116-123.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 116-123
    • Dyksterhouse, S.E.1    Gray, J.P.2    Herwig, R.P.3    Lara, J.C.4    Staley, J.T.5
  • 9
    • 38249032636 scopus 로고
    • Glucosidases and galactosidases in soils
    • Eivazi, F., and Tabatabai, M.A. 1988. Glucosidases and galactosidases in soils. Soil Biol. Biochem. 20,601-606.
    • (1988) Soil Biol. Biochem , vol.20 , pp. 601-606
    • Eivazi, F.1    Tabatabai, M.A.2
  • 10
    • 0041851188 scopus 로고    scopus 로고
    • Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation
    • Hara, A., Syutsubo, K., and Harayama, S. 2003. Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation. Environ. Microbiol. 5(9), 746-753.
    • (2003) Environ. Microbiol , vol.5 , Issue.9 , pp. 746-753
    • Hara, A.1    Syutsubo, K.2    Harayama, S.3
  • 12
    • 28444466634 scopus 로고    scopus 로고
    • Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR
    • Heissblanquet, S., Benoit, Y., Maréchaux, C., and Monot, F. 2005. Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR. J. Appl. Microbiol. 99, 1392-1403.
    • (2005) J. Appl. Microbiol , vol.99 , pp. 1392-1403
    • Heissblanquet, S.1    Benoit, Y.2    Maréchaux, C.3    Monot, F.4
  • 13
    • 0027260811 scopus 로고
    • A computer program for the determination of most probable number and its confidence limits
    • Klee, A.J. 1993. A computer program for the determination of most probable number and its confidence limits. J. Microbiol. Methods. 18, 91-98.
    • (1993) J. Microbiol. Methods , vol.18 , pp. 91-98
    • Klee, A.J.1
  • 14
    • 0038384754 scopus 로고    scopus 로고
    • Design of PCR Primers and gene probes for general detection alkane-degrading bacteria
    • Kohno, T., Sugimoto, Y., Sei, K., and Mori, K. 2002. Design of PCR Primers and gene probes for general detection alkane-degrading bacteria. Microbiol. Environ. 17(3), 114-212.
    • (2002) Microbiol. Environ , vol.17 , Issue.3 , pp. 114-212
    • Kohno, T.1    Sugimoto, Y.2    Sei, K.3    Mori, K.4
  • 15
    • 33845230332 scopus 로고    scopus 로고
    • Effect of hydrocarbon pollution on the microbial properties of a sandy and a clay soil
    • Labud, V., Garcia, C., and Hernandez, T. 2007. Effect of hydrocarbon pollution on the microbial properties of a sandy and a clay soil. Chemosphere. 66, 1863-1871.
    • (2007) Chemosphere , vol.66 , pp. 1863-1871
    • Labud, V.1    Garcia, C.2    Hernandez, T.3
  • 16
    • 34547756264 scopus 로고    scopus 로고
    • Dynamic changes in microbial activity and community structure during biodegradation of petroleum compounds: A laboratory experiment
    • Li Hui, Z.Y., Kravchenko, I., Xu, H., and Zhang, C. 2007. Dynamic changes in microbial activity and community structure during biodegradation of petroleum compounds: A laboratory experiment. J. Environ. Sci. 19, 1003-1013.
    • (2007) J. Environ. Sci , vol.19 , pp. 1003-1013
    • Li Hui, Z.Y.1    Kravchenko, I.2    Xu, H.3    Zhang, C.4
  • 17
    • 0028995417 scopus 로고
    • A comparison of microbial communitycharacteristicsamongpetroleum-contaminatedanduncontaminatedsubsurfacesoilsamples
    • Long, S.C., Aelion, M., Dobbins, D.C., and Pfaender, E.K. 1995. A comparison of microbial communitycharacteristicsamongpetroleum-contaminatedanduncontaminatedsubsurfacesoilsamples. Microb. Ecol. 30, 297-307.
    • (1995) Microb. Ecol , vol.30 , pp. 297-307
    • Long, S.C.1    Aelion, M.2    Dobbins, D.C.3    Pfaender, E.K.4
  • 18
    • 0038317584 scopus 로고    scopus 로고
    • Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils
    • Margesin, R., Labbe, D., Schinner, F.C., Greer, W., and Whyte, L.G. 2003. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils. Appl. Environ. Microbiol. 69, 3085-3092.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3085-3092
    • Margesin, R.1    Labbe, D.2    Schinner, F.C.3    Greer, W.4    Whyte, L.G.5
  • 19
    • 0032848984 scopus 로고    scopus 로고
    • Bioremediation of oil contaminated beach sediments using indigenous microorganisms in Singapore
    • Mathew, M., Obbard, J.P., Ting, Y.P., Gin, Y.H., and Tan, H.M. 1999. Bioremediation of oil contaminated beach sediments using indigenous microorganisms in Singapore. Acta. Biotechnol. 19, 225-233
    • (1999) Acta. Biotechnol , vol.19 , pp. 225-233
    • Mathew, M.1    Obbard, J.P.2    Ting, Y.P.3    Gin, Y.H.4    Tan, H.M.5
  • 20
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA
    • Muyzer, G., Waal, E.C., and Uitterlinden, A.G. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    Waal, E.C.2    Uitterlinden, A.G.3
  • 21
    • 33645499687 scopus 로고    scopus 로고
    • Soil biological activities in monitoring the bioremediation of diesel oil-contaminated soil
    • Riffaldi, R., Levi-Minzi, R., Cardelli, R., Palumbo, S., and Saviozzi, A. 2006. Soil biological activities in monitoring the bioremediation of diesel oil-contaminated soil. Water. Air. Soil Pollut. 170, 3-15.
    • (2006) Water. Air. Soil Pollut , vol.170 , pp. 3-15
    • Riffaldi, R.1    Levi-Minzi, R.2    Cardelli, R.3    Palumbo, S.4    Saviozzi, A.5
  • 22
    • 33744762185 scopus 로고    scopus 로고
    • Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
    • Sabirova, J.S., Ferrer, M., Regenhardt, D., Timmis, K.N., and Golyshin, P.N. 2006. Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization. J. Bacteriol. 188(11), 3763-3773.
    • (2006) J. Bacteriol , vol.188 , Issue.11 , pp. 3763-3773
    • Sabirova, J.S.1    Ferrer, M.2    Regenhardt, D.3    Timmis, K.N.4    Golyshin, P.N.5
  • 23
    • 0038347357 scopus 로고    scopus 로고
    • Monitoring of alkane-degrading bacteria in a sea-water microcosm during crude oil degradation by polymerase chain reaction based on alkane catabolic genes
    • Sei, K., Sugimoto, Y., Mori, K., Maki, H., and Kohno, T. 2003. Monitoring of alkane-degrading bacteria in a sea-water microcosm during crude oil degradation by polymerase chain reaction based on alkane catabolic genes. Environ. Microbiol. 5(6), 517-522.
    • (2003) Environ. Microbiol , vol.5 , Issue.6 , pp. 517-522
    • Sei, K.1    Sugimoto, Y.2    Mori, K.3    Maki, H.4    Kohno, T.5
  • 25
    • 1342289955 scopus 로고    scopus 로고
    • Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis
    • Van Beilen, J., Mercedes, M., Smits, M.H., Martina, R., Alessandro, G.F., Witholt, B., and Fernando, R. 2004. Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ. Microbiol. 6(3), 264-273.
    • (2004) Environ. Microbiol , vol.6 , Issue.3 , pp. 264-273
    • van Beilen, J.1    Mercedes, M.2    Smits, M.H.3    Martina, R.4    Alessandro, G.F.5    Witholt, B.6    Fernando, R.7
  • 26
    • 0033759661 scopus 로고    scopus 로고
    • Molecular characterization of bacterial populations in petroleum contaminated groundwater discharged from underground crude oil storage cavities
    • Watanabe, K., Watanabe, K., Kodama, Y., Syutsubo, K., and Harayama, S. 2000. Molecular characterization of bacterial populations in petroleum contaminated groundwater discharged from underground crude oil storage cavities. Appl. Environ. Microbiol. 66, 4803-4809.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 4803-4809
    • Watanabe, K.1    Watanabe, K.2    Kodama, Y.3    Syutsubo, K.4    Harayama, S.5
  • 27
    • 0029662428 scopus 로고    scopus 로고
    • Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most probable number procedure
    • Wrenn, B.A., and Venosa, A.D. 1996. Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most probable number procedure. Can. J. Microbiol. 42(3), 252-258.
    • (1996) Can. J. Microbiol , vol.42 , Issue.3 , pp. 252-258
    • Wrenn, B.A.1    Venosa, A.D.2
  • 28
    • 0041707966 scopus 로고    scopus 로고
    • Effect of nutrient amendments on indigenous hydrocarbon biodegradation in oil contaminated beach sediments
    • Xu, R., and Obbard, J.P. 2003. Effect of nutrient amendments on indigenous hydrocarbon biodegradation in oil contaminated beach sediments. J. Environ. Qual. 32, 1234-1243.
    • (2003) J. Environ. Qual , vol.32 , pp. 1234-1243
    • Xu, R.1    Obbard, J.P.2
  • 29
    • 23944477886 scopus 로고    scopus 로고
    • Natural microbial diversity in superficial sediments of Milazzo Harbour (Sicily) and community successions during microcosm enrichment with various hydrocarbons
    • Yakimov, M.M., Denaro, R., Genovese, M., Cappello, S., D'Auria, G., Chernikova, T.N., Timmis, K.T., Golyshin, P.N., and Giuliano, L. 2005. Natural microbial diversity in superficial sediments of Milazzo Harbour (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environ. Microbiol. 7(9), 1426-1441.
    • (2005) Environ. Microbiol , vol.7 , Issue.9 , pp. 1426-1441
    • Yakimov, M.M.1    Denaro, R.2    Genovese, M.3    Cappello, S.4    D'Auria, G.5    Chernikova, T.N.6    Timmis, K.T.7    Golyshin, P.N.8    Giuliano, L.9
  • 31
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou, J., Bruns, M.A., and Tiedje, J.M. 1996. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62, 316-322.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.